SEARCH

SEARCH BY CITATION

References

  • Akkapeddi A, Noormets A, Deo BK, Karnosky DF, Podila GK. 1999. Gene structure and expression of aspen cytosolic Cu, Zn-superoxide dismutase (PtSodCc1). Plant Science 143: 151162.
  • Baldi P, Hatfield GW. 2002. DNA microarrays and gene expression from experiment to data analysis and modeling. Cambridge, UK: Cambridge University Press.
  • Bernhard WR, Matile P. 1994. Differential expression of glutamine synthetase genes during the senescence of Arabidopsis thaliana rosette leaves. Plant Science 98: 714.
  • Bobbink R. 1998. Impacts of tropospheric ozone and airborne nitrogenous pollutants on natural and seminatural ecosystems: a commentary. New Phytologist 139: 1123.
  • Booker FL, Reid CD, Brunschon-Harti S, Ficus EL. 1997. Photosynthesis and photorespiration in soybean (Glycine max (L.) Merr) chronically exposed to elevated carbon dioxide and ozone. Journal of Experimental Botany 48: 18431852.
  • Brazma A, Hingamp P, Quackenbush J, Sherlock G, Spellman P, Stoeckert C, Aash J, Ansorge W, Ball CA, Causton HC, Gaasterland T, Glenisson P, Holstege FCP, Kim IF, Markowitz V, Matese JC, Parkinson H, Robinson A, Sarkans U, Schulze-Kremer S, Stewart J, Taylor R, Vilo J, Vingron M. 2001. Minimum information about a microarray experiment (MIAME) – toward standards for microarray data. Nature Genetics 29: 365371.
  • Broadmeadow M. 1998. Ozone and forest trees. New Phytologist 139: 123125.
  • Bryant J, Taylor G, Frehner M. 1998. Photosynthetic acclimation to elevated CO2 is modified by source:sink balance in three component species of chalk grassland swards grown in a free air carbon dioxide enrichment (FACE) experiment. Plant, Cell & Environment 21: 159168.
  • Chang S, Puryear J, Cairney J. 1993. A simple method for isolating RNA from pine trees. Plant Molecular Biology Reporter 11: 113–116.
  • Cheong YH, Chang HS, Gupta R, Wang X, Zhu T, Luan S. 2002. Transcriptional profiling reveals novel interactions between wounding, pathogen abiotic stress and hormonal responses in Arabidopsis. Plant Physiology 129: 661677.
  • Conklin PL, Last RL. 1995. Differential accumulation of antioxidant mRNAs in Arabidopsis thaliana exposed to ozone. Plant Physiology 109: 203212.
  • Dickson RE, Lewin KF, Isebrands JG, Coleman MD, Heilman WE, Riemenschneider DE, Sober J, Host GE, Zak DR, Hendrey GR, Pregitzer KS, Karnosky DF. 2000. Forest atmosphere carbon transfer and storage (FACTS-II). The Aspen Free-air CO2 and O3 Enrichment (FACE) Project: an overview. General technical report NC-214. St Paul, MN, USA: USDA Forest Service North Central Research Station, 68.
  • Drake BG, Gonzalez-Meler MA, Long SP. 1997. More efficient plants: a consequence of rising atmospheric CO2. Annual Review of Plant Physiology and Plant Molecular Biology 48: 609639.
  • Duplessis S, Courty PE, Tagu D, Martin F. 2005. Transcript patterns associated with ectomycorrhiza development in Eucalyptus globulus and Pisolithus microcarpus. New Phytologist 165: 599611.
  • Ederli L, Pasqualini S, Batini P, Antonielli M. 1997. Photoinhibition and oxidative stress: effects on xanthophyll cycle, scavenger enzymes and abscisic acid content in tobacco plants. Journal of Plant Physiology 151: 422428.
  • Eisen MB, Spellman PT, Brown PO, Botstein D. 1998. Cluster analysis and display of genome-wide expression patterns. Proceedings of the National Academy of Sciences, USA 95: 1486314768.
  • Ferris R, Sabatti M, Miglietta F, Mills RF, Taylor G. 2001. Leaf area is stimulated in Populus by free air CO2 enrichment (POPFACE), through increased cell expansion and production. Plant, Cell & Environment 24: 305315.
  • Fowler D, Cape JN, Coyle M, Flechard C, Kuylenstierna J, Hicks K, Derwent D, Johnson C, Stevenson D. 1999. The global exposure of forests to air pollutants. Water, Air and Soil Pollution 116: 532.
  • Fry SC, Smith RC, Renwick KF, Martin DJ, Hodge SK, Matthews KJ. 1992. Xyloglucan endotransglycosylase, a new wall-loosening enzyme activity from plants. Biochemistry Journal 282: 821828.
  • Gesch RW, Boote KJ, Vu JCV, Allen LH Jr, Bowes G. 1998. Changes in growth CO2 result in rapid adjustments of ribulose-1, 5-bisphosphate carboxylase/oxygenase small subunit gene expression in expanding and mature leaves of rice. Plant Physiology 118: 521529.
  • Glick RE, Schlagnhaufer CD, Arteca RN, Pell EJ. 1995. Ozone-induced ethylene emission accelerates the loss of ribulose1, 5-bisphosphate carboxylase/oxygenase and nuclear-encoded mRNAs in senescing potato leaves. Plant Physiology 109: 891898.
  • Grams TEE, Anegg S, Haberle KH, Langebartels C, Matyssek R. 1999. Interactions of chronic exposure to elevated CO2 and O3 levels in the photosynthetic light and dark reactions of European beech (Fagus sylvatica). New Phytologist 144: 95107.
  • Isebrands JG, McDonald EP, Kruger E, Hendrey G, Percy K, Pregitzer K, Sober J, Karnosky DF. 2001. Growth responses of Populus tremuloides clones to interacting elevated carbon dioxide and tropospheric ozone. Environmental Pollution 115: 359371.
  • Jones AM, Herman EM. 1993. KDEL-containing auxin-binding protein is secreted to the plasma membrane and cell wall. Plant Physiology 101: 595606.
  • Karnosky DF, Mankovska B, Percy K, Dickson RE, Podila GK, Sober J, Noormets A, Hendrey G, Coleman MD, Kubiske M, Pregitzer KS, Isebrands JG. 1999. Effects of tropospheric O3 on trembling aspen and interactions with CO2 results from an O3 gradient and a FACE experiment. Water, Air and Soil Pollution 116: 311322.
  • Karnosky DF, Percy KE, Xiang B, Callan B, Noormets A, Mankovska B, Hopkin A, Sober J, Jones W, Dickson RE, Isebrands JG. 2002. Interacting elevated CO2 and tropospheric O3 predisposes aspen (Populus tremuloides Michx.) to infection by rust (Melampsora medusae f.sp. tremuloidae). Global Change Biology 8: 329338.
  • Karnosky DF, Podila GK, Gagnon Z, Pechter P, Akkapeddi A, Coleman M, Dickson RE, Isebrands JG. 1998. Genetic control of responses to interacting O3 and CO2 in Populus tremuloides. Chemosphere 36: 807812.
  • Karnosky DF, Zak DR, Pregitzer KS, Awmack CS, Bockheim JG, Dickson RE, Hendrey GR, Host GE, King JS, Kopper BJ, Kruger EL, Kubiske ME, Lindroth RL, Mattson WJ, McDonald EP, Noormets A, Oksanen E, Parsons WFJ, Percy KE, Podila GK, Riemenschneider DE, Sharma P, Thakur R, Sober A, Sober J, Jones WS, Anttonen S, Vapaavuori E, Mankovska B, Heilman W, Isebrands JG. 2003. Low levels of tropospheric O3 moderate responses of temperate hardwood forests to elevated CO2: a synthesis of results from the Aspen FACE project. Functional Ecology 17: 289304.
  • Keeling CD, Whort TP, Wahlen M, Vander Plicht J. 1995. Interannual extremes in the rate of rise of atmospheric carbon dioxide since 1980. Nature 375: 666670.
  • King JS, Pregitzer KS, Zak DR, Sôber J, Isebrands JG, Dickson RE, Hendrey GR, Karnosky DF. 2001. Fine root biomass and fluxes of soil carbon in young stands of paper birch and trembling aspen as affected by elevated atmospheric CO2 and tropospheric O3. Oecologia 128: 237250.
  • Kohler A, Delaruelle C, Martin D, Encelot N, Martin F. 2003. The poplar root transcriptome: analysis of 7000 expressed sequence tags. FEBS Letters 542: 3741.
  • Kull O, Sober A, Coleman MD, Dickson RE, Isebrands JG, Gagnon Z, Karnosky DF. 1996. Photosynthetic responses of aspen clones to simultaneous exposures of ozone and CO2. Canadian Journal of Forest Research 26: 639648.
  • Landry LG, Pell EJ. 1993. Modification of rubisco and altered proteolytic activity in O3-stressed hybrid poplar (Populus maximowizii×trichocarpa). Plant Physiology 101: 13551362.
  • Larson PR, Isebrands JG. 1971. The plastochron index as applied to developmental studies of cottonwood. Canadian Journal of Forest Research 1: 111.
  • Lehrach H, D. Diamond JM, Wozney, H.Boedtker. 1977. RNA molecular weight determination by gel electrophoresis under denaturing conditions: a critical reexamination. Biochemistry 16: 47434751.
  • Lindroth RL, Kinney KK, Platz CL. 1993. Responses of deciduous trees to elevated atmospheric CO2: productivity, phytochemistry and insect performance. Ecology 74: 763777.
  • Lindroth RL, Roth S, Kruger EL, Volin JC, Koss PA. 1997. CO2-mediated changes in aspen chemistry: effects on gypsy moth performance and susceptibility to virus. Global Change Biology 3: 279289.
  • Lohman KN, Gan S, John MC, Amasino RM. 1994. Molecular analysis of natural senescence in Arabidopsis thaliana. Physiologia Plantarum 92: 322328.
  • Long AD, Mangalam HJ, Chan BYP, Tolleri L, Hatfield GW, Baldi P. 2001. Improved statistical inference from DNA microarray data using analysis of variance and a bayesian statistical framework. Journal of Biological Chemistry 276: 1993719944.
  • Loreto F, Velikova V. 2001. Isoprene produced by leaves protects the photosynthetic apparatus against ozone damage, quenches ozone products, and reduces lipid peroxidation of cellular membranes. Plant Physiology 127: 17811787.
  • Lutz C, Anegg S, Gerant D, Slaoui-Sosse B, Gerard J, Dizengremel P. 2000. Beech trees exposed to high CO2 and to simulated summer ozone levels: effects on photosynthesis, chloroplast components and leaf enzyme activity. Physiologia Plantarum 109: 252259.
  • McDonald EP, Kruger EL, Riemenschneider DE, Isebrands JG. 2002. Competitive status influences tree growth responses to elevated CO2 and O3 in aggrading aspen stands. Functional Ecology 16: 792801.
  • Miller JD, Richard NA, Pell EJ. 1999. Senescence-associated gene expression during ozone-induced leaf senescence in arabidopsis. Plant Physiology 120: 10151024.
  • Moore BD, Cheng SH, Sims D, Seeman JR. 1999. The biochemical and molecular basis for photosynthetic acclimation of elevated atmospheric CO2. Plant, Cell & Environment 22: 567582.
  • Nali C, Guidi L, Filippi F, Soldatini GF, Lorenzini G. 1998. Photosynthesis of two poplar clones contrasting in O3 sensitivity. Trees 12: 196200.
  • Nie GY, Tomasevic M, Baker NR. 1993. Effects of ozone on the photosynthetic apparatus and leaf proteins during leaf development in wheat. Plant, Cell & Environment 16: 643651.
  • Noormets A, McDonald EP, Dickson RE, Kruger EL, Sôber A, Isebrands JG, Karnosky DF. 2001a. The effect of elevated CO2 and O3 on leaf and branch level photosynthesis and potential plant level carbon gain in aspen. Trees 15: 262270.
  • Noormets A, Sôber A, Pell EJ, Dickson RE, Podila GK, Sôber J, Isebrands JG, Karnosky DF. 2001b. Stomatal and non-stomatal limitation to photosynthesis in two trembling aspen (Populus tremuloides Michx.) clones exposed to elevated CO2 and/or O3. Plant, Cell & Environment 24: 327336.
  • Norby RJ, Wullschleger SD, Gunderson CA, Johnson DW, Ceulemans R. 1999. Tree responses to rising CO2 in field experiments: implications for the future forest. Plant, Cell & Environment 22: 683714.
  • Oren R, Ellsworth DE, Johnsen KH, Phillips N, Ewers BE, Maier C, Schäfer KVR, McCarthy H, Hendrey G, McNulty SG, Katul GG. 2001. Soil fertility limits carbon sequestration by forest ecosystems in a CO2-enriched atmosphere. Nature 411: 469472.
  • Pell EJ, Schlagnhaufer CD, Arteca RN. 1997. Ozone-induced oxidative stress: mechanisms of action and reaction. Physiologia Plantarum 100: 264273.
  • Percy KE, Awmack CS, Lindroth RL, Kubiske ME, Kopper BJ, Isebrands JG, Pregitzer KS, Hendrey GR, Dickson RE, Zak DR, Oksanen E, Sober J, Harrington R, Karnosky DF. 2002. Altered performance of forest pests under atmospheres enriched by CO2 and O3. Nature 6914: 403407.
  • Peter M, Courty P-E, Kohler A, Delaruelle C, Martin D, Tagu D, Frey-klett P, Duplessis S, Chalot M, Podila G, Martin F. 2003. Analysis of expressed sequence tags from the ectomycorrhizal basidiomycetes Laccaria bicolor and Pisolithus microcarpus. New Phytologist 159: 117129.
  • Polle A, Pell E. 1999. Role of carbon dioxide in modifying the plant response to ozone. In: LuoY, MooneyHA, eds. Carbon dioxide and environmental stress. New York, USA: Academic Press, 193213.
  • Rao MV, Davis KR. 1999. Ozone-induced cell death occurs via two distinct mechanisms in Arabidopsis: the role of salicylic acid. The Plant Journal of Cell and Molecular Biology 17: 603614.
  • Rao MV, Lee HI, Creelman RA, Mullet JE, Davis KR. 2000. Jasmonic acid signaling modulates ozone-induced hypersensitive cell death. The Plant Cell 12: 16331646.
  • Rey A, Jarvis PG. 1998. Long-term photosynthetic acclimation to increased atmospheric CO2 concentration in young birch (Betula pendula) trees. Tree Physiology 18: 441450.
  • Reymond P, Weber H, Damond M, Farmer EE. 2000. Differential gene expression in response to mechanical wounding and insect feeding in Arabidopsis. Plant Cell 12: 707719.
  • Ryerson TB, Trainer M, Holloway JS, Parrish DD, Huey LG, Sueper DT, Frost GJ, Donnelly SG, Schauffler S, Atlas S, Kuster WC, Goldan PD, Hubler G, Meagher JF, Fehsenfeld FC. 2001. Observations of ozone formation in plant plumes and implications for ozone control strategies. Science 292: 719723.
  • Scalet M, Federico R, Guido MC, Manes F. 1994. Peroxidase activity and polyamine changes in response to ozone and simulated acid rain in aleppo pine needles. Environmental and Experimental Botany 35: 417425.
  • Schwanz P, Catherine P, Vivin P, Dreyer E, Guehl JM, Polle A. 1996. Responses of antioxidant systems to drought stress in pendunculate oak and maritime pine as modulated by elevated CO2. Plant Physiology 110: 393402.
  • Schwanz P, Polle A. 1998. Antioxidative systems, pigment and protein contents in leaves of adult Mediterranean oak species (Quercus pubescens and Q. ilex) with lifetime exposure to elevated CO2. New Phytologist 140: 411423.
  • Sehmer L, Fontaine V, Antoni F, Dizengremel P. 1998. Effects of ozone and elevated atmospheric carbon dioxide on carbohydrate metabolism of spruce needles. Catabolic and detoxification pathways. Physiologia Plantarum 102: 605611.
  • Sharma P, Sober A, Sober J, Podila GK, Kubiske ME, Mattson WJ, Isebrands JG, Karnosky DF. 2003. Moderation of [CO2]-induced gas exchange responses by elevated tropospheric O3 in trembling aspen and sugar maple. Ecologia-Bratislava 22 (Supplement): 304317.
  • Stasolla C, Belmonte MF, Van Zyl L, Craig DL, Liu W, Yeung EC, Sederoff RR. 2004. The effect of reduced glutathione on morphology and gene expression of white spruce (Picea glauca) somatic embryos. Journal of Experimental Botany 55: 695709.
  • Sterky F, Bhalerao RR, Unneberg P, Segerman B, Nilsson P, Brunner AM, Charbonnel-Campaa L, Jonsson Lindvall J, Tandre K, Strauss SH, Sundberg B, Gustafsson P, Uhlén M, Bhalerao RP, Nilsson O, Sandberg G, Karlsson J, Lunderberg J, Jansson S. 2004. A Populus EST resource for plant functional genomics. Proceedings of the National Academy of Sciences, USA 101: 1395113956.
  • Tamaoki M, Nakajima N, Kubo A, Aono M, Matsuyama T, Saji H. 2003. Transcriptome analysis of O3-exposed Arabidopsis reveals that multiple signal pathways act mutually antagonistically to induce gene expression. Plant Molecular Biology 53: 443456.
  • Tamayo P, Slonim D, Mesirov J, Zhu Q, Kitareewan S, Dmitrovsky E, Lander ES, Golub TR. 1999. Interpreting patterns of gene expression with self-organizing maps: methods and application to hematopoietic differentiation. Proceedings of the National Academy of Sciences, USA 96: 29072912.
  • Taylor G, Tricker PJ, Zhang FZ, Alston VJ, Miglietta F, Kuzminsky E. 2003. Spatial and temporal effects of free-air CO2 enrichment (POPFACE) on leaf growth, cell expansion, and cell production in a closed canopy of poplar. Plant Physiology 1: 177185.
  • Timpte C. 2001. Auxin binding protein: curiouser and curiouser. Trends in Plant Science 6: 586590.
  • Tissue DT, Griffin KL, Ball JT. 1999. Photosynthetic adjustment in field grown ponderosa pine trees after six years of exposure to elevated CO2. Tree Physiology 19: 221228.
  • Tjoelker MG, Oleksyn J, Reich PB. 1998a. Seedlings of five boreal tree species differ in acclimation of net photosynthesis to elevated CO2 and temperature. Tree Physiology 18: 715726.
  • Tjoelker MG, Oleksyn J, Reich PB. 1998b. Temperature and ontogeny mediate growth response to elevated CO2 in seedlings of five boreal tree species. New Phytologist 140: 197210.
  • Tognini M, Ranieri A, Castagna A, Nali C, Lorenzini G, Soldatini GF. 1997. Ozone-induced alterations in thylakoid protein patterns in pumpkin leaves of different age. Phyton 37: 277282.
  • Tokarska-Schlattner M, Fink A, Castillo FJ, Crespi P, Crevecoeur M, Greppin H, Tacchini P. 1997. Effects of ozone on the plasma membrane proteins in Arabidopsis thaliana (L.) leaves. Plant, Cell & Environment 20: 12051211.
  • Van Damme EJ, Charels D, Menu-Bouaouiche L, Proost P, Barre A, Rouge P, Peumans WJ. 2002. Biochemical, molecular and structural analysis of multiple thaumatin-like proteins from the elderberry tree (Sambucus nigra L.). Planta 214: 853862.
  • Volin JC, Reich PB. 1996. Interaction of elevated CO2 and O3 growth, photosynthesis and respiration of three perennial species grown in low and high nitrogen. Physiologia Plantarum 97: 674684.
  • Wellburn FAM, Wellburn AR. 1996. Variable patterns of antioxidant protection but similar ethene emission differences between ozone-fumigated and control treatments in several ozone-sensitive and ozone-tolerant plant selections. Plant, Cell & Environment 19: 754760.
  • Will RE, Ceulemans R. 1997. Effects of elevated CO2 concentration on photosynthesis, respiration and carbohydrate status of coppice Populus hybrids. Physiologia Plantarum 100: 933939.
  • Winkel-Shirley B. 2003. Flavonoid biosynthesis. A colorful model for genetics, biochemistry, cell biology, and biotechnology. Plant Physiology 126: 485493.
  • Wolfgang M, Barry CS, Tauriainen AA, Betz C, Tuomainen J, Utriainen M, Grierson D, Sandermann H, Langebartels C, Kangas J. 2002. Ethylene synthesis regulated by biphasic induction of 1-aminocyclopropane-1-carboxylic acid synthase and 1-aminocyclopropane-1-carboxylic acid oxidase genes is required for hydrogen peroxide accumulation and cell death in ozone-exposed tomato. Plant Physiology 130: 19181926.
  • Wustman BA, Oksanen E, Karnosky DF, Sôber J, Isebrands JG, Hendrey GR, Pregitzer KS, Podila GK. 2001. Effects of elevated CO2 and O3 on aspen clones varying in O3 sensitivity: can CO2 ameliorate the harmful effects of O3? Environmental Pollution 115: 473481.
  • Van Zyl L, Von Arnold S, Bozhkov P, Chen Y, Egertsdotter U, MacCay J, Sederoff RR, Shen J, Zelena L, Clapham DH. 2002. Heterologous array analysis in Pinaceae: hybridization of Pinus taeda cDNA arrays with cDNA from needles and embryogenic cultures of P. taeda, P. sylvestris or Picea abies. Comparative and Functional Genomics 3: 306318.