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13C, 639

15N, 639

16S rDNA, 589

3D, 781

6-kestosidase (6-KEH), 917

6-ketose exohydrolase, 709

Abies spp., 619

Achillea, 8, 273

Achillea millefolium agg., 273

adaptation, 193, 362, 655, 717

adaptive plasticity, 93

adaptive recursion, 39

adaptive response, 101

ADP-glucose pyrophosphoryase, 185

AFLP, 273

Albizia, 231

algal metabolism, 371

allocation, 513

allopolyploidy, 291

Amborella, 383

ammonium toxicity, 551

amova (analysis of molecular variance), 663

analysis of variance (anova), 319

ancient DNA, 409

androdioecy, 119

androgenesis, 455

angiosperm phylogeny, 383

anthocyanin production, 339

antioxidants, 366

apical meristems, 722

apoplast, 709

apple tree, 813

Arabidopsis thaliana, 129

arbuscular mycorrhiza, 611, 981

arbuscular mycorrhiza (AM), 601

arbuscule, 611

Arbutus unedo, 1011

Archaefructus, 383

Artemisia vulgaris, 981

AtFKBP13, 753

attenuation coefficients, 957

available PAR, 141

barley (Hordeum vulgare), 859

basal angiosperms, 383

bet-hedging, 159

biodiversity, 359, 737

biomass, 513

biomass allocation, 149, 537

biomechanics, 61, 791

Bradyrhizobium, 231

Brassica rapa spp. pekinensis (Chinese cabbage), 241

breeding, 859

breeding-system evolution, 119

bryophyte, 695

bush willow, 813

[Ca2+]cyt signalling toolkit, 21

calcium (Ca), 21

cambium, 61

candidate genes, 717

canonical modelling, 845

canopy, 781

canopy structure, 695

carbohydrates, 565

carbon dioxide (CO2), 217

carbon partitioning, 869

carbon-13 discrimination, 497

carbonic anhydrase, 205

Carex (sedge), 537

cassava, 305

CAT scanning and X-ray imaging, 967

cell elongation, 241

cell expansion, 722

cell fate, 722

cell wall, 941

cell walls, 193

cellular signaling, 366

cellulose synthase, 907

Cenococcum, 263

Cephalanthera damasonium, 639

cereals, 439

CesA, 907

charophycean algae, 957

Chloranthaceae, 383

chlorophyll fluorescence, 791, 941

chloroplast, 753

chloroplast DNA, 1051

chromosomal translocation, 291

chronic photoinhibition, 791

climate, 357

climate change, 217, 369

clubroot, 241

clustering of tree-structured entities, 813

coil, 611

cold tolerance, 917

colonized roots, 251

colour analysis, 339

community composition, 359

community structure, 251

competition, 217, 525, 565, 631, 737

complexity, 708

computer models, 708

concentration reduction, 933

conductance, 205

construction cost (CC), 513

cost of plasticity, 49

crop model, 859

cuticle, 722

cuticular transpiration, 589

cyclophilin, 753

Daucus carota, 339

defoliation, 565

desiccation, 193

differential host, 1035

differentiation, 9

differentiation of meristems, 813

diffusion, 205

dimethylsulfide (DMS), 371

dioecy, 119

dispersal, 83

dissolution, 205

distyly, 663

diversification, 383

DNA, 359

DNA damage, 957

DNA dosimeters, 957

DNA fingerprinting, 251

DNA taxonomy, 1063

domestication, 305

Dutch elm disease, 1025

dynamic photoinhibition, 791

eco-devo, 5

ecological breadth, 173

ecological developmental genetics, 39

ecology, 61

ecomolecular synthesis, 39

ecosystem engineers, 737

ecosystem respiration, 497

ecosystems, 359

ecotype, 101

ectomycorrhiza, 1063

ectomycorrhizal fungi, 631

ectomycorrhizal (ECM) fungi, 251

ectomycorrhizal fungi communities, 993

ectomycorrhizas, 1011

edge effects, 723

elevated CO2, 513

ELF (enzyme-labelled fluorescence), 611

embryonic lethals, 673

emergence, 881

endogenous viruses, 291

endosperm, 185

energy, 513

environment, 801

environmental cues, 5, 159

environmental gradients, 465

environmental heterogeneity, 93

epiphyllous bryophytes, 577

epiphytic bacteria, 589

Erythrophleum, 231

Erythroxylaceae, 663

Euphorbiaceae, 305

eutrophication, 551

evolution, 21, 291, 61

evolution of mutation rates, 362

evolutionary (genetic) algorithm, 159

extended L-systems, 859

extinction debt, 723

extracellular matrix, 722

FV/FM, 791

FACE, 369

Farquhar model, 205

fecundity, 525

Festulolium, 455

fission yeast, 185

fitness, 129, 525

FKBP, 753

flavonoids, 427

flowering time, 83, 129

fluctuation analysis, 655

fluctuation test, 362

foliar leaching, 577

forage grass, 455

forest, 827

forest trees, 717

fossil, 409

freezing tolerance, 455, 709

freshwater ecosystems, 957

FRIGIDA, 129

fructan, 709

fructan exohydrolases (FEHs), 917

FSPM, 708

function-structure, 781

functional gender, 119

functional genomics, 717

functional–structural plant modeling, 869

functional–structural plant modelling, 845

fungi, 263, 1063

G × E interactions, 49

gender plasticity, 119

gene expression, 907

gene-for-gene interaction, 1035

genealogy, 263

genetic assimilation, 101

genetic differentiation, 723

genetic diversity, 723

genetic map, 1035

genetic structure, 663

genetic variation in plasticity, 49

genome duplication, 8

genome rearrangement, 8

genome size, 455

genomic in situ hybridization (GISH), 455

genotype–phenotype model, 859

genotype-by-environment interaction, 319

genotype-by-environment interactions, 685

geophyte, 193

germination, 83

gibberellic acid (GA), 859

global change, 359

grapevine, 895

grasses, 881

grassland, 217

green-tree retention, 993

growth, 525, 957

growth form, 61, 695

growth modelling, 771

growth promotion, 241

growth zone, 881

gynodioecy, 119

habitat selection, 83

hard selection, 319

heathlands, 551

herbivory, 737

heterogeneity, 73

heterosis, 685

Hg availability, 445

Hg complex speciation, 445

hidden genetic variation, 101

hidden Markov tree models, 813

hierarchical selection, 73

high pigment, 427

high-value timber, 231

humic acid, 445

hybrid fitness, 685

hybrid speciation, 273

hybridization, 273, 685, 1051

hydraulic architecture, 791

hypersensitive cellular response, 419

hypersensitive response, 941

image analysis, 339

immunophilin, 753

in vivo imaging, 339

inbreeding depression, 673

independence, 73

induced plant-Hg accumulation, 445

induced resistance, 49

inoculum potential, 601

integration, 73, 708

intergenerational plasticity, 93

internal acidification, 551

intraspecific genetic variation, 409

invasiveness, 173

isolated plant cuticle, 589

isoprene, 419

isoprenoids, 427

ITS DNA sequence, 619

ITS–RFLP, 1011

ITS-RFLP analysis, 993

jasmonic acid, 895

JIP-test, 941

Keeling plot, 497

key innovation, 61

key innovations, 383

keystone species, 737

L-system, 801, 869

L-systems, 845

laser scanning, 695

leaf, 9

leaf characteristics, 577

leaf economics, 485

leaf elongation, 881

leaf longevity, 149

leaf physiognomy, 357, 465

leaf senescence, 537

leaf surface, 589

legumes, 439

light compensation point, 712

light cues, 141

light environment, 827

life-history patterns, 101

light stress, 427

Liliaceae, 565

lipophilic antioxidants, 366

loblolly pine, 907

local genetic differentiation, 663

logarithmic transformation, 319

low light, 712

LSCM (laser scanning confocal microscope), 611

lumichrome, 439

lycopene, 427

Lycopersicon esculentum (tomato), 427

Malus sieversii (wild apple), 1035

mass flowering, 663

maternal effects, 83, 93, 685

matgrass swards, 551

measurement, 781

Mediterranean forests, 1011

membrane fluidity, 366

meristem, 9

metabolic activity, 611

metabolomics, 427

metapopulation, 723

methyljasmonate, 895

Mexico, 663

microalgae, 362

microclimate, 781

micromorphology, 967

microsatellite marker, 1035

microspectral fluorometry, 941

Millettia, 231

mine tailings, 445

minirhizotron, 967

mixed-conifer forest, 619

mixotrophy, 639

modeling, 369, 781

modeling plant growth and development, 869

modularity, 73

molecular identification, 1063

molecular markers, 409

molecular techniques, 359

molecular typing, 1011

morphogenesis, 9

morphology, 859

morphometric analysis, 1051

Münch flow, 771

mutation, 655

mutation rates, 362

mutualism, 737

mycelia, 251

mycoheterotrophy, 639

mycorrhizas, 263, 639

N cycle, 217

N productivity, 217

N : P ratio, 537, 981

Na-orthovanadate, 895

natural forest, 231

neutral shade, 141

Nicotiana spp., 291

nitrate, 933

nitric oxide (NO), 419

nitrogen (N), 565, 981

nitrogen deposition, 551

nitrogen (N) exchange, 577

nitrogen-fixing trees, 231

nitrogen-use efficiency, 217

nonlinear modelling, 845

Nothofagus, 497

novelty, 101

nutrient cycling, 737

nutrient losses, 537

nutrient resorption, 537

nutrient stoichiometry, 485

nutrients, 371

old trees, 1011

ontogeny, 149

Ophiostoma novo-ulmi, 1025

optimum phenotype and phenotypic plasticity, 101

orchids, 639

oxidative stress, 339

oxygen supply, 339

ozone, 419, 941

palaeobotany, 357

palaeoclimates, 357

palaeoecology, 357

palaeogenetics, 409

patch size, 93

patch turnover, 723

pattern formation, 9

performance, 827

phases of elongation, 881

phenology, 1025

phenotype, 61

phenotype plasticity, 159

phenotypic adaptation, 93

phenotypic expression, 5

phenotypic plasticity, 5, 73, 83, 129, 141, 149, 319

phloem sugar δ13C, 497

phosphatase, 611

phosphorus (P), 981

phosphorus (P) deficiency, 601

photoinhibition, 695

photosynthesis, 205, 419, 485, 513, 537, 639

photosynthetic eukaryotes, 21

photosynthetic traits, 712

phyllochron, 881

phylloclimate, 781

phyllosphere, 577

phylogenetics, 907

phylogeny, 263

phytochrome function, 383

phytomer, 801

phytoplankton, 371

Pinus murciata, 631

Pinus taeda, 907

plant architecture, 708, 801

plant architecture modelling, 813

plant cell culture, 339

plant cell wall, 722

plant defence response, 601

plant development, 439

plant eco-devo, 39

plant function, 845

plant functional types, 485

plant hormones, 241

plant life history, 5

plant mating systems, 673

plant model, 827

plant–microbial interactions, 595

plant–pathogen interaction, 241

plants, 21

Plasmodiophora brassicae, 241

plasticity, 173

plasticity costs, 5, 129

plasticity genes, 49

pollen fertility, 455

pollen limitation, 723

Polygonum hydropiper, 141

Polygonum persicaria, 141

polyploidy, 8, 273

poplar, 39

population genetics, 263

population history, 409

Populus trichocarpa, 39

power law, 845

priority, 771

priority effect, 631

Pseudotsuga menziesii (Douglas-fir), 993

QTL mapping, 129

quantum yield, 655

Quercus ilex, 1011

quiescence, 193

R : FR ratio, 141

radiocarbon, 595

random amplified polymorphic DNA (RAPD), 663

random amplified polymorphic DNAs (RAPDs), 1051

reaction norm, 73, 101

reactive oxygen species (ROS), 419

recurrent formation, 8

relational growth grammars (RGG), 859

reproductive allocation, 159

reproductive compensation, 673

reserves, 565

resource competition, 933

respiration, 485

respiration rate, 712

resurrection, 193

resveratrol, 895

Rhizopogon, 631

rhizosphere signal molecule, 439

risk aversion, 565

Rmc mutant, 601

root colonization, 981

root community, 619

root diameter, 967

root-length density, 967

root–soil interplay, 967

root washing, 967

rRNA genes, 993

saprotrophic fungi, 595

satellite repeats, 291

SDS-PAGE, 193

secondary cell wall, 907

seed dispersal, 93, 173, 737

seed : ovule ratio, 673

seedling functional morphology, 305

seedlings, 1011

self-fertilization, 673

semivariance, 695

Senecio, 1051

Senecio aquaticus, 685

Senecio jacobaea (ragwort), 685

sequence database, 1063

SERMUN, 933

shade avoidance, 49

shade tolerance, 712

sheath, 881

Sicily, 1051

Sierra Nevada, 619

signalling, 21

simulation, 845

single nucleotide polymorphisms, 39

soft selection, 319

soil respiration, 595

soil structure, 967

solute transport, 709

source and sink strength, 771

source–sink interactions, 771

source–sink transition, 366

spatial pattern, 465

spatial structure, 619

spatial variability, 359

Spcdc25, 185

species composition, 251

species diversity, 993

species richness, 251

specific leaf area, 149

Spirogyra, 655

sporocarp, 595

stilbenes, 895

stomatal development, 722

storage, 565

storage proteins, 193

strategy, 827

stress response, 149

subdioecy, 119

succinate dehydrogenase, 611

sulfur (S), 371

sulphur-containing ligands, 445

sulphureous water, 655

supply pre-emption, 933

surface roughness, 695

survival, 551

survival analysis, 525

symbiosis-defective plant mutants, 601

synthetic chorologic floras, 465

Taraxacum, 173

temperature dependence, 205

temporal variability, 359

TERACC, 369

three-dimensional modeling, 205

three-dimensional models, 791

thylakoid lumen, 753

tillering, 801

tobacco, 8

tocopherols, 366

tocotrienols, 366

tomato (Lycopersicon esculentum), 601

transfer functions, 465

transgenic wheat (Triticum aestivum), 185

tree architecture, 827

tree segmentation, 813

Triticum aestivum, 917

tropical rainforest understorey, 577

twisted dwarf, 753

Ulmus minor, 1025

Ulmus pumila, 1025

UNITE, 1063

UV-B absorbing compounds, 957

UV-B radiation, 957

vacuole, 709

Venturia inaequalis (apple scab), 1035

vernalization, 129

vessel, 1025

Viola, 525

Viola septemloba, 149

virtual experiments, 708

virtual plants, 708

visible foliar symptoms, 941

vital rates, 525

vitamin E, 366

Vitis vinifera, 895

water availability, 525

water transport, 589

wheat, 917

wheat (Triticum aestivum), 801

whorl, 881

wild Manihot, 305

wood formation, 907

Xanthium strumarium (common cocklebur), 513

xylem diameter, 1025