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15N, 143

abscisic acid, 459

acclimation, 321

acid phosphatase, 491

actin microfilaments, 275

adaptation, 227

adventitious roots, 767

aerenchyma, 213

aerenchyma, 767

Agrostis, 479

alcohols, 631

alkanes, 631

allele, 177

amplified fragment length polymorphism (AFLP) markers, 21

animal co-evolution, 212

annuals, 357

anthocyanin, 311

anthrone technique, 99

aquatic macrophytes, 311

Arabidopsis thaliana, 33, 275, 459

arbuscular mycorrhiza, 644

arbuscular mycorrhizal fungi, 369

arbuscular mycorrhizas, 143

arctic tundra, 291

Argentina, 357

aridity, 212

Aristotle, 10

arms race, 425

ascospores, 129

association mapping, 227

atmospheric change, 333

Australia, 212

auxin, 641

auxin-regulated gene, 391

bacteria, 6, 208

balance pressure, 75

Bambusa oldhamii (bamboo), 53

barley (Hordeum vulgare), 261

biogeography, 212

biotroph, 644

BLIND gene, 701

botanical composition, 631

Botrytis cinerea, 537

bottom-up, 513

boundary layer conductance, 87

boundary layer resistance, 87

Brassica napus (oilseed rape), 129

Brassicaceae, 239

bud break, 3

bud burst, 723

Burkholderia sp, 208

C2 domain, 261

cadmium, 239

calcium signalling, 261

California, 551

cambium, 739

candidate genes, 227, 723

Candidatus Glomeribacter gigasporarum, 208

canola (Brassica), 429

canopy, 321

capitulum, 711

carbon (C) allocation, 479

carbon (C) gain, 321

carbon isotope discrimination, 467

cDNA arrays, 739

cDNA cloning, 53

cDNA microarray, 523

Ceanothus cuneatus, 143

cell area fraction (CAF), 75

cell wall moisture, 75

chlorophyll fluorescence, 291, 311

chloroplast trnL-F, 411

chromium, 261

chronosequence, 99

citrate, 491

climate change, 3, 333

climate–growth responses, 861

CO2, 311

coevolution, 425, 609

comparative genomics, 753

comparative transcriptomics, 201

competition, 6

complexity, 428

composite interval mapping (CIM), 33

COMPOUND INFLORESCENCE gene, 701

conifers, 301

crop–wild hybridization, 429

cross-species, 239

cucumber (Cucumis stativus), 459

cyanobacteria, 597

Cyperaceae, 491

cytochrome P450, 657

cytorrhisis, 75

Dalechampia scandens, 65

dauciform roots, 491

deciduous, 819

decomposition, 6

defense, 609, 677

dendroclimatology, 861

development, 641

developmental stability, 65

differential gene expression, 53

dispersal, 177

domestication, 185

Douglas-fir (Pseudotsuga menziesii), 107, 345

drought, 467, 795

drug hypersensitivity, 275

dry season, 561

ecological development, 653

ectomycorrhiza, 381, 401, 423

ectomycorrhiza (EM), 177

ectomycorrhiza descriptions, 581

ectomycorrhizal (EcM) fungi, 153

ectomycorrhizal communities, 381

ectomycorrhizal distribution, 873

ectomycorrhizal fungi, 873

ectomycorrhizas, 143, 561

edaphic factors, 873

elevated CO2, 107, 321, 345

elevated temperature, 345

Elymus, 411, 513

endophyte, 423

endopolygalacturonase BcPG1, 537

endosymbiosis, 208

environmental cues, 653

Epichloë, 513

epistatic gene systems, 648

epistatic interactions, 33

epistemology, 10

ericoid mycorrhiza, 423

ethylene, 213

Eucalyptus, 739

Eucalyptus globulus, 119

Eucalyptus pauciflora (snow gum), 75

Euphorbiaceae, 65

evapotranspiration, 849

evergreen, 819

evolution, 885

excess light energy, 311

expressed sequence tags (ESTs), 723

extramatrical mycelium, 381

extreme temperature event, 291

exudates, 6

FACE, 204

fibre saturation point, 75

fine roots, 345

fire, 99

flavonoid glycosides, 779

flooding, 213, 767

floral transition, 701

floret number, 711

Florida scrub, 99

flower, 641

fluctuating asymmetry, 65

fluorescence spectroscopy, 779

foliar nitrogen, 835

food security, 204

forces in cell walls, 75

free-air gas concentration enrichment (FACE), 333

functional traits, 835

fungal endophyte, 513

fungi, 6, 208

gas chromatography–mass spectrometry, 459

gas exchange and photosynthetic performance, 779

gene expression, 43

gene flow, 177, 429

genetic control of plasticity, 648

genetic map, 21

genetic structure, 165

genetic variation, 513

genetically modified (GM) crops, 429

genomic differentiation, 411

genotype, 467

geomorphology, 212

GFP (green fluorescent protein), 129

GH3, 391

gibberellin, 885

global change, 107, 204, 291, 345

glutathione reductase (GR), 43

grass, 885

grassland, 835

heat and cold resistance, 291

heat budget, 87

heat tolerance, 479

heat transfer, 3

heat transfer coefficients, 87

heavy metal stress, 261

heavy metals, 11

Hebeloma cylindrosporum, 391, 401

height, 807

Helianthus (sunflower), 615

Helianthus annuus (sunflower), 523

herbaceous species, 631

herbivore, 677

herbivory, 425, 513

homeostasis, 648

host specificity, 551

host–enemy interactions, 609

humidity in intercellular spaces, 75

hybrid speciation, 615

hybridization, 411

hydrolysable tannins, 779

hyperaccumulation, 239

hypersensitive response, 537

immunolocalization, 43, 459

induced defense, 653

insect–plant interactions, 609

instability, 648

internal aeration, 767

internal transcribed spacer (ITS), 581, 597

intra-annual growth, 301

intracellular, 644

introgression, 429

ion compartmentation, 615

ionic and water relations, 779

iterative discovery, 428

JOINTLESS gene, 701

large subunit (LSU), 581

Larix decidua (European larch), 861

latrunculin B, 275

leaf expansion, 65

leaf mass per area (LMA), 835

leaf morpho-anatomy and leaf optics, 779

leaf senescence, 261

leaf traits, 819

lichen, 597

light, 677

light-saturated photosynthesis (Amax), 119

linkage disequilibrium, 227

lipid peroxidation, 779

lodgepole pine (Pinus contorta), 87

Lotus japonicus, 644

macroarray, 723

magnesium (Mg), 153

major resistance gene, 129

malonate, 153, 491

manganese (Mn), 11

mast fruiting, 561

maximum rate of Rubisco activity (Vcmax), 119

Medicago truncatula, 165

Mediterranean oaks, 819

meristem, 641, 711

meristem identity, 701

methodology, 10

microarray, 201, 239

Microberlinia bisulcata, 561

microbial communities, 165

microsatellite, 177

microtubules, 275

minirhizotrons, 345

model species, 201

modelling, 428, 641

molecular phylogenetic analysis, 581

molecular phylogenies, 212

morphotyping, 581, 873

moving correlation function, 861

mutualism, 423, 445

mycorrhiza, 391, 445, 653

mycorrhizal networks, 143

mycorrhizas, 357

mycorrhization, 6

Mycosphaerella leaf disease (MLD), 119

near-infrared reflectance spectroscopy (NIRS), 631

necrotrophic fungus, 523

neophyte, 11

net ecosystem CO2 exchange, 849

network, 428

nitrogen, 819

nitrogen (N), 401

nitrogen (N) allocation, 479

nitrogen (N) transfer, 143

nitrogen-use efficiency (NUE), 467

nonaspartyl acid protease ACP1, 537

nonhost resistance, 655

nonmetric multidimensional scaling, 369

nonnative plants, 445

nonpathogenic mutant, 537

nonphotochemical quenching (NPQ), 311

nonstructural carbohydrates (NSC), 99

Nostoc, 597

nuclear ribosomal internal transcribed spacer (ITS), 411

Nusselt number, 3

oilseed rape (Brassica napus), 429

oligonucleotide, 239

ontology, 10

organic acids, 491

organogenesis, 641

Oryza nivara, 185

Oryza rufipogon, 185

Oryza sativa, 185

oxalate, 153, 537

oxidative burst, 501, 537

oxygen transport, 767

oxygen, 213

ozone, 204

partial resistance, 523

pathogen, 677

pathogens, 445

pea (Pisum sativum) leaves, 43

peptide transport, 401

peptide transporter (PTR) family, 401

perennials, 357

peroxisomes, 43

pezizales, 423, 581

Pfeffer, 10

phenology, 561

phenotypic plasticity, 648, 653

phloem, 739

Phoma macdonaldii, 523

phoma stem canker, 129

phosphorus (P), 153

phosphorus deficiency, 491

phosphorus uptake, 491

photoperiod, 301

photoprotection, 311

photosynthesis, 819, 835, 849

photosynthetic nitrogen use efficiency (PNUE), 835

phototropins, 653

phylogenetic independent contrasts, 807

phylogenetic signal, 807

phylogeny, 411

physiology, 10

phytochromes, 653

pine, 381

Pinus, 551

Pinus pinaster, 391

Pinus sabiniana, 143

Pinus sylvestris (Scots pine), 153

plant, 212

plant defence mechanism, 501

plant defense, 425, 523

plant development, 165

plant functional traits, 357

plant invasions, 445

plant pathogens, 655

plant strategies, 795

plant wax marker, 631

plant–insect interactions, 657

plant–soil feedbacks, 445

plastic responses, 795

polypeptide secretion, 655

polyploidization, 411

Populus fremontii, 369

potassium (K), 153

potential electron transport rate (Jmax), 119

primary production, 333

primordium initiation, 711

probe masking, 239

Pseudocyphellaria, 597

Pseudotsuga menziesii (Douglas fir), 11

purification, 43

quantitative trait loci (QTL), 33, 467

quantitative trait loci (QTL) analysis, 21

quantitative trait locus (QTL), 185

Quercus douglasii, 143

Quercus petraea, 723

radial oxygen loss, 767

radiation use efficiency (RUE), 321

rain forest, 561

real-time reverse transcriptase polymerase chain reaction (RT-PCR), 723

reciprocal parasitism, 423

recombinant inbred lines (RIL), 33

recombinant proteins, 53

regeneration niche, 795

relative growth rate, 467

reproductive organs, 459

resin, 657

resistance, 425, 609, 677

respiration, 849

Rhizopogon, 551

rhizosphere, 6

ribulose bisphosphate (RuBP), 119

ribulose bisphosphate carboxylase (Rubisco), 119

rice, 185

rice (Oryza sativa), 321

riparian, 369

river, 369

root dynamics, 345

root morphology, 357

root porosity, 767

root production and mortality, 345

root topology, 357

root-knot nematode, 501

roots, 631

rust, 644

salt tolerance, 615

Santa Rita Experimental Range, 849

scale, 428

seed yield, 333

selection, 6

selenium (Se), 33

SELF PRUNING gene, 701

semiarid, 369

shade tolerance, 795

shelter effect, 87

shoot elongation, 213

signal transduction, 213, 653

signalling pathways, 655

single-nucleotide polymorphisms (SNPs), 227

sodium, 615

soil biota, 445

soil moisture, 807

soil moisture storage, 849

soil respiration, 107

soil warming, 107

Solanum lycopersicum (tomato, formerly Lycopersicon esculentum Mill.), 701

soybean, 204

soybean (Glycine max), 333

spatial ecology, 381

specific leaf area, 819

spore bank, 551

stomatal conductance, 119

stress adaptation, 753

sucrose synthase, 53

sulfur, 615

sunflower (Helianthus), 429

sunflower (Helianthus annuus), 711

suppression subtractive hybridization (SSH), 723

suppression subtractive hybridization (SSH) library, 739

symbiosis, 597, 644

symbiotic associations, 165

symbiotic genes, 655

symbiotic microbes, 655

SYMRK, 644

system, 428

systems biology, 10, 428

Tansley, 428

tasselseed, 885

taxonomic families, 357

temperature, 87, 301

temperature-sensitivity, 129

terpenes, 657

terpenoid synthase, 657

terrestrial ecosystems, 227

Tertiary Period, 212

Thlaspi caerulescens, 21, 753

tissue expansion, 711

tolerance, 33, 425, 609, 677

tomato (Solanum lycopersicon), 501

trait correlations, 807

transcriptome, 753

transcriptomics, 239

transgene escape, 429

transport, 11

tree line, 3

tree ring, 861

trees, 561

T-RFLP, 381

tRNALeu (UAA) intron, 597

tropical Africa, 561

tropospheric ozone, 333

underwater photosynthesis, 213

UNIFLORA gene, 701

uniformitarian principle, 861

unisexual flower, 885

UNITE database, 873

vessels, 807

virulence, 501

water potential, 807

waterlogging, 767

water-use efficiency, 819

water-use efficiency (WUE), 467

white spruce (Picea glauca), 87

willow (Salix), 467

wood, 301

wood density, 807

xanthophyll cycle, 311

xylem, 739

xylogenesis, 301

Zea, 885

zinc, 239

zinc (Zn) hyperaccumulation, 21, 753