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References

  • APG. 1998. An ordinal classification for the families of flowering plants. Annals of the Missouri Botanical Garden 85: 531553.
  • APG II. 2003. An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG II. Botanical Journal of the Linnean Society 141: 399436.
  • Avise JC. 2000. Phylogeography: the history and formation of species. Cambridge, MA. USA: Harvard University Press.
  • Barker FK, Cibois A, Schieler P, Feinstein J, Cracraft J. 2004. Phylogeny and diversification of the largest avian radiation. Proceedings of the National Academy of Sciences, USA 101: 1104011045.
  • Bartish IV, Swenson U, Munzinger J, Anderberg AA. 2005. Phylogenetic relationships amongst New Caledonian Sapotaceae (Ericales): Molecular evidence for generic polyphyly and repeated dispersal. American Journal of Botany 92: 667673.
  • Becerra JX. 2003. Synchronous coadaptation in an ancient case of herbivory. Proceedings of the National Academy of Science, USA 100: 1280412807.
  • Becerra JX. 2005. Timing the origin and expansion of the Mexican tropical dry forest. Proceedings of the National Academy of Science, USA 100: 1091910923.
  • Bramley GLC, Pennington RT, Zakaria R, Sudarmiyati Tjitrosoedirdjo S, Cronk QCB. 2004. Assembly of tropical plant diversity on a local scale: Cyrtandra (Gesneriaceae) on Mount Kerinci, Sumatra. Biological Journal of the Linnean Society 81: 4962.
  • Bridgewater S, Ratter JA, Ribeiro JF. 2004. Biogeographic patterns, β-diversity and dominance in the cerrado biome of Brazil. Biodiversity and Conservation 13: 22952318.
  • Brown JH, Lomolino MV. 1998. Biogeography, 2nd edn. Sunderland, MA, USA: Sinauer.
  • Burnham RJ, Johnson KR. 2004. South American palaeobotany and the origins of neotropical rain forests. Philosophical Transactions of the Royal Society of London, Series B 359: 15951610.
  • Burslem DFRP, Pinard MA, Hartley SE. 2005. Biotic interactions in the tropics. Cambridge, UK: Cambridge University Press.
  • Calsbeek RG, Thompson JN, Richardson JE. 2003. Patterns of molecular evolution and diversification in a biodiversity hotspot: the California Floristic Province. Molecular Ecology 12: 10211029.
  • Chanderbali AS, Van Der Werff H, Renner SS. 2001. Phylogeny and historical biogeography of Lauraceae: evidence from the chloroplast and nuclear genomes. Annals of the Missouri Botanical Garden 88: 104134.
  • Chave J, Jabot F. 2006. Tatame: estimation of Θ and m by maximum likelihood in the neutral model with dispersal limitation. Toulouse, France: Université Paul Sabatier, (http://www.edb.ups-tlse.fr/equipe1/chave/tetame.htm).
  • Corlett MT, Primack RB. 2006. Tropical rainforests and the need for cross-continental comparisons. Trends in Ecology and Evolution 21: 104110.
  • Crepet WL, Nixon KC, Gandolfo MA. 2004. Fossil evidence and phylogeny: the age of major angiosperm clades based on mesofossil and macrofossil evidence from Cretaceous deposits. American Journal of Botany 91: 16661682.
  • Crisp MC, Cook L, Steane D. 2004. Radiation of the Australian flora: what can comparisons of molecular phylogenies across multiple taxa tell us about the evolution of diversity in present-day communities? Philosophical Transactions of the Royal Society of London, Series B 359: 15511571.
  • Darwin C. 1859. The origin of species by means of natural selection or the preservation of favoured races in the struggle for life. London, UK: John Murray.
  • Davies TJ, Barraclough TG, Savolainen V, Chase MW. 2004. Environmental correlates of evolutionary rates and species richness in flowering plants. Philosophical Transactions of the Royal Society of London Series B 359: 16451656.
  • Davis CC, Bell CD, Fritsch PW, Mathews S. 2002a. Phylogeny of Acridocarpus–Brachylophon (Malpighiaceae): implications for Tertiary tropical floras and Afroasian biogeography. Evolution 56: 23952408.
  • Davis CC, Bell CD, Mathews S, Donoghue MJ. 2002b. Laurasian migration explains Gondwanan disjunctions: evidence from Malpighiaceae. Proceedings of the National Academy of Science, USA 99: 68336837.
  • Davis CC, Webb CO, Wurdack KJ, Jaramillo CA, Donoghue MJ. 2005. Explosive radiation of Malpighiales supports a mid-Cretaceous origin of modern tropical rain forests. American Naturalist 165: E36E65.
  • Dick CW, Abdul-Salim K, Bermingham E. 2003. Molecular systematics reveals cryptic Tertiary diversification of a widespread tropical rain forest tree. American Naturalist 162: 691703.
  • Dobzhansky T. 1950. Evolution in the tropics. American Scientist 38: 209221.
  • Donoghue MJ, Smith SA. 2004. Patterns in the assembly of temperate forests around the Northern Hemisphere. Philosophical Transactions of the Royal Society of London Series B 359: 16331644.
  • Enquist BJ, Haskell JP, Tiffney JA. 2002. General patterns of taxonomic and biomass partitioning in extant and fossil plant communities. Nature 419: 610613.
  • Etienne RS, Latimer AM, Silander JA, Cowling RM. 2006. Comment on ‘Neutral Ecological Theory Reveals Isolation and Rapid Speciation in a Biodiversity Hot Spot’. Science 311: 610b.
  • Fine PVA, Daly DC, Villa Muñoz G, Mesones I, Cameron KM. 2005. The contribution of edaphic heterogeneity to the evolution and diversity of Burseraceae trees in the western Amazon. Evolution 59: 14641478.
  • Gentry AH. 1982. Neotropical floristic diversity: phytogeographical connections between Central and South America: Pleistocene climatic fluctuations or an accident of the Andean orogeny. Annals of the Missouri Botanical Garden 69: 557593.
  • Gentry AH. 1993. Diversity and floristic composition of lowland tropical forest in Africa and South America. In: GoldblattP, ed. Biological relationships between Africa and South America. New Haven, CT, USA: Yale University Press, 500547.
  • Gustafsson M, Bittrich V. 2003. Evolution of morphological diversity and resin secretion in flowers of Clusia L. (Clusiaceae): insights from ITS sequence variation. Nordic Journal of Botany 22: 183203.
  • Hankin RKS. 2006. The Untb Package: ecological drift under the Unified Neutral Theory of Biodiversity and Biogeography, version 1.0–20. London, UK: Royal Project for Statistical Computing (http://www.r-project.org/).
  • Hardy CR, Linder HP. 2005. Intraspecific variability and timing in ancestral ecology reconstruction: a test case from the Cape Flora. Systematic Biology 54: 299316.
  • Harpole SH, Tilman D. 2006. Non-neutral patterns of species abundance in grassland communities. Ecology Letters 9: 1523.
  • Harvey PH, Pagel MD. 1991. The comparative method in evolutionary biology. Oxford, UK: Oxford University Press.
  • Herendeen PS, Crepet WL, Dilcher DL. 1992. The fossil history of the Leguminosae. Phylogenetic and biogeographic implications. In: HerendeenPS, DilcherDL, eds. Advances in legume systematics, part. 4. The fossil record. Kew, UK: Royal Botanic Gardens, 303316.
  • Hewitt G. 2000. The genetic legacy of the Quaternary ice ages. Nature 405: 907913.
  • Higgins SI, Nathan R, Cain ML. 2003. Are long-distance dispersal events in plants usually caused by nonstandard means of dispersal? Ecology 84: 19451956.
  • Hileman LC, Vasey MC, Parker VT. 2001. Phylogeny and biogeography of the Arbutoideae (Ericaceae). Implications for the Madrean–Tethyan Hypothesis. Systematic Botany 26: 131143.
  • Hubbell SP. 2001. The Unified Neutral Theory of Biodiversity and Biogeography. Princeton, NJ, USA: Princeton University Press.
  • Humphries CJ, Parenti LR. 1999. Cladistic biogeography. interpreting patterns of plant and animal distributions. Oxford Biogeography Series no. 12. Oxford, UK: Oxford University Press.
  • Irwin DE. 2002. Phylogeographic breaks without geographic barriers to gene flow. Evolution 56: 23832394.
  • Jacobs BF. 2004. Paleobotanical studies from tropical Africa: relevance to the evolution of forest, woodland, and savannah biomes. Philosophical Transactions of the Royal Society of London, Series B 359: 15731583.
  • Jacobs BF, Kingston JD, Jacobs LL. 1999. The origin of grass-dominated ecosystems. Annals of the Missouri Botanical Garden 86: 590643.
  • Langley CH, Fitch W. 1974. An estimation of the constancy of the rate of molecular evolution. Journal of Molecular Evolution 3: 161177.
  • Latimer AM, Silander JA, Cowling RM. 2005. Neutral ecological theory reveals isolation and rapid speciation in a biodiversity hot spot. Science 309: 17221725.
  • Lavin M. 1988. Systematics of Coursetia (Leguminosae–Papilionoideae). Systematic Botany Monographs 21: 1167.
  • Lavin M. 2006. Floristic and geographical stability of discontinuous seasonally dry tropical forests explains patterns of plant phylogeny and endemism. In: PenningtonRT, LewisGP, RatterJA, eds. Neotropical savannas and seasonally dry forests: plant diversity, biogeography and conservation. Boca Raton, Florida, USA: CRC Press, 433447.
  • Lavin M, Luckow M. 1993. Origins and relationships of tropical North America in the context of the boreotropics hypothesis. American Journal of Botany 80: 114.
  • Lavin M, Schrire BD, Lewis G, Pennington RT, Delgado-Salinas A, Thulin M, Hughes CE, Beyra-Matos A, Wojciechowski MF. 2004. Metacommunity processes rather than continental tectonic history better explain geographically structured phylogenies in legumes. Philosophical Transactions of the Royal Society of London, Series B 359: 15091522.
  • Lavin M, Herendeen P, Wojciechowski MF. 2005. Evolutionary rates analysis of Leguminosae implicates a rapid diversification of lineages during the Tertiary. Systematic Biology 54: 530549.
  • Li W-H. 1997. Molecular evolution, 1st edn. Sunderland, MA, USA: Sinauer.
  • Linder HP, Hardy CR. 2004. Evolution of the species-rich Cape flora. Philosophical Transactions of the Royal Society of London, Series B 359: 16231632.
  • Linder HP, Hardy CR, Rutschman F. 2005. Taxon sampling effects in molecular clock dating: an example from the African Restionaceae. Molecular Phylogenetics and Evolution 35: 569582.
  • MacArthur RH, Wilson EO. 1967. The theory of island biogeography. Princeton, NJ, USA: Princeton University Press.
  • Magallón S. 2004. Dating lineages; molecular and paleontological approaches to the temporal framework of clades. International Journal of Plant Sciences 165: S7S21.
  • Magallón S, Crane PR, Herendeen PS. 1999. Phylogenetic pattern, diversity and diversification of eudicots. Annals of the Missouri Botanical Garden 86: 297372.
  • Miles L, Newton AC, DeFries RS, Ravilious C, May I, Blyth S, Kapos V, Gordon JE. 2006. A global overview of the conservation status of tropical dry forests. Journal of Biogeography 33: 491505.
  • Moran RC, Smith AR. 2001. Phytogeographic relationships between neotropical and African–Madagascan Pteridophytes. Brittonia 53: 304351.
  • Moreau CS, Bell CD, Vila R, Archibald SB, Pierce NE. 2006. Phylogeny of the ants: diversification in the age of angiosperms. Science 312: 101104.
  • Morley RJ, Dick CW. 2003. Missing fossils, molecular clocks and the origin of the Melastomataceae. American Journal of Botany 90: 16381645.
  • Near TJ, Sanderson MJ. 2004. Assessing the quality of molecular divergence time estimates by fossil calibrations and fossil-based model selection. Philosophical Transactions of the Royal Society of London, Series B 359: 14771483.
  • Nelson G, Platnick N. 1981. Systematics and biogeography: cladistics and vicariance. New York, NY, USA: Columbia University Press.
  • Pennington RT, Dick CW. 2004. The role of immigrants in the assembly of the Amazonian tree flora. Philosophical Transactions of the Royal Society of London, Series B 359: 16111622.
  • Pennington RT, Pendry CA, Goodall-Copestake W, O'Sullivan S. 2004. Phylogenetic analysis of Ruprechtia. In: Pendry CA. A monograph of Ruprechtia (Polygonaceae). Systematic Botany Monographs 67: 1217.
  • Pennington RT, Lewis GP, Ratter JA. 2006. An overview of the plant diversity, biogeography and conservation of neotropical savannas and seasonally dry forests. In: PenningtonRT, LewisGP, RatterJA, eds. Neotropical savannas and seasonally dry forests: plant diversity, biogeography and conservation. Boca Raton, Florida, USA: CRC Press, pp. 129.
  • Pirie MD, Chatrou LW, Erkens RHJ, Maas JW, Van Der Niet T, Mols JB, Richardson JE. 2005. Phylogeny reconstruction and molecular dating in four Neotropical genera of Annonaceae: the effect of taxon sampling in age estimations. In: BakkerFT, ChatrouLW, GravendeelB, PelserPB, eds. Plant species-level systematics: new perspectives on pattern and process. Regnum Vegetabile 143. Liechtenstein: ARG Gantner Verlag, 149174.
  • Pitman NCA, Terborgh J, Silman NR, Nunez PV. 1999. Tree species distributions in an upper Amazonian forest. Ecology 80: 26512661.
  • Pitman NCA, Terborgh J, Silman MR, Percy-Nuñez V, Neil DA, Cerón CE, Palacios WA, Aulestia M. 2001. Dominance and distribution of tree species in upper Amazonian terra firme forests. Ecology 82: 21012117.
  • Plana V, Gascoigne A, Forest LL, Harris D, Pennington RT. 2004. Pleistocene and pre-Pleistocene speciation in Africa. Molecular Phylogenetics and Evolution 31: 449461.
  • Ratter JA, Bridgewater S, Ribeiro JF. 2006. Biodiversity patterns of the woody vegetation of the Brazilian cerrados. In: PenningtonRT, LewisGP, RatterJA, eds. Neotropical savannas and seasonally dry forests: plant diversity, biogeography and conservation. Boca Raton, Florida, USA: CRC Press.
  • Raven PH, Axelrod DI. 1974. Angiosperm biogeography and past continental movements. Annals of the Missouri Botanical Garden 61: 539673.
  • Raven PH, Polhill RM. 1981. Biogeography of the Leguminosae. In: PolhillRM, RavenPH, eds. Advances in Legume Systematics, part 1. Kew, UK: Royal Botanic Gardens, 2734.
  • Renner SS. 2004. Plant dispersal across the tropical Atlantic by wind and sea currents. International Journal of Plant Science 165: S23S33.
  • Renner SS. 2005. Relaxed molecular clocks for dating historical plant dispersal events. Trends in Plant Science 10: 550558.
  • Renner SS, Clausing G, Meyer K. 2001. Historical biogeography of Melastomataceae: the roles of Tertiary migration and long-distance dispersal. American Journal of Botany 88: 12901300.
  • Richardson JE, Chatrou LW, Mols JB, Erkens RHJ, Pirie MD. 2004. Historical biogeography of two cosmopolitan families of flowering plants. Philosophical Transactions of the Royal Society of London, Series B 359: 14951508.
  • Richardson JE, Pennington RT, Pennington TD, Hollingsworth PM. 2001b. Recent and rapid diversification of a species-rich genus of neotropical trees. Science 293: 22422245.
  • Richardson JE, Weitz FM, Fay MF, Cronk QCB, Linder HP, Reeves G, Chase MW. 2001a. Rapid and recent origin of species richness in the Cape flora of South Africa. Nature 412: 181183.
  • Ricklefs RE, Latham RE. 1992. Intercontinental correlation of geographical ranges suggests stasis in ecological traits of relict genera of temperate perennial herbs. American Naturalist 139: 13051321.
  • Rutschman F. 2006. Molecular dating of phylogenetic trees: a brief review of current methods that estimate divergence times. Diversity and Distributions 12: 3548.
  • Sanderson MJ. 1997. A nonparametric approach to estimating divergence times in the absence of rate constancy. Molecular Biology and Evolution 14: 12181231.
  • Sanderson MJ. 1998. Estimating rate and time in molecular phylogenies: beyond the molecular clock?. In: SoltisPS, SoltisDE, DoyleJ, eds. Plant molecular systematics, 2nd edn. New York, NY, USA: Chapman & Hall, 242264.
  • Sanderson MJ. 2002. Estimating absolute rates of molecular evolution and divergence times: a penalized likelihood approach. Molecular Biology and Evolution 19: 101109.
  • Sanderson MJ. 2003. r8s: inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock. Bioinformatics 19: 301302.
  • Sanderson MJ, Doyle JA. 2001. Sources of error and confidence intervals in estimating the age of angiosperms from rbcL and 18S rRNA data. American Journal of Botany 88: 14991516.
  • Sanderson MJ, Kim J. 2000. Parametric phylogenetics? Systematic Biology 49: 817829.
  • Sanmartín I, Ronquist F. 2004. Southern hemisphere biogeography inferred by event-based models: plant versus animal patterns. Systematic Biology 53: 216243.
  • Sanmartín I, Enghof H, Ronquist F. 2001. Patterns of animal dispersal, vicariance and diversification in the Holarctic. Biological Journal of the Linnean Society 73: 345390.
  • Schneider H, Schuettpelz E, Pryer KM, Cranfill R, Magallón S, Lupia R. 2004. Ferns diversified in the shadow of angiosperms. Nature 428: 553557.
  • Schrire BD, Lavin M, Lewis GP. 2005. Global distribution patterns of the Leguminosae: insights from recent phylogenies. Biologiske Skrifter 55: 375422.
  • Simpson GG. 1980. Splendid isolation. The curious history of South American mammals. New Haven, CT, USA: Yale University Press.
  • Springer MS, Murphy WJ, Eizirik E, O’Brien SJ. 2003. Placental mammal diversification and the Cretaceous–Tertiary boundary. Proceedings of the National Academy of Sciences, USA 100: 1105611061.
  • Thorne JL, Kishino H. 2002. Divergence time and evolutionary rate estimation with multilocus data. Systematic Biology 51: 689702.
  • Upchurch GR, Wolfe JA. 1987. Mid-Cretaceous to Early Tertiary vegetation and climate: evidence from fossil leaves and wood. In: FriisEM, ChalonerWG, CranePR, eds. The origins of angiosperms and their biology consequences. Cambridge, UK: Cambridge University Press, 75105.
  • Valencia R, Balslev H, Paz G, Miño C. 1994. High tree alpha diversity in Amazonian Ecuador. Biodiversity and Conservation 3: 2128.
  • Wallace AR. 1878. Tropical nature and other essays. London, UK: MacMillan.
  • Webb CO. 2000. Exploring the phylogenetic structure of ecological communities: an example for rain forest trees. American Naturalist 156: 145155.
  • Webb CO, Ackerly DD, McPeek MA, Donoghue MJ. 2002. Phylogenies and community ecology. Annual Review of Ecology and Systematics 33: 475505.
  • Weeks A, Daly DC, Simpson BB. 2005. The phylogenetic history and biogeography of the frankincense and myrrh family (Burseraceae) based upon nuclear and chloroplast sequence. Molecular Phylogenetics and Evolution 35: 85101.
  • Wiens JJ. 2004. Speciation and ecology revisited: phylogenetic niche conservatism and the origin of species. Evolution 58: 193197.
  • Wiens JJ, Donoghue MJ. 2004. Historical biogeography, ecology and species richness. Trends in Ecology and Evolution 19: 639644.
  • Wing SL. 1987. Eocene and Oligocene floras and vegetation of the Rocky Mountains. Annals of the Missouri Botanical Garden 74: 748784.
  • Wolfe JA. 1975. Some aspects of plant geography of the northern hemisphere during the late Cretaceous and Tertiary. Annals of the Missouri Botanical Garden 62: 264279.
  • Woodward FI, Lomas MR, Kelly CK. 2004. Global climate and the distribution of plant biomes. Philosophical Transactions of the Royal Society of London, Series B 359: 14651476.
  • Wright SJ. 2002. Plant diversity in tropical forests: a review of mechanisms of species coexistence. Oecologia 130: 114.
  • Zerega NJC, Clement WL, Datwyler SL, Weiblen GD. 2005. Biogeography and divergence times in the mulberry family (Moraceae). Molecular Phylogenetics and Evolution 37: 402416.