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  • Acosta-Elias J, Pineda U, Luna-Rivera JM, Stevens-Navarro E, Campos-Canton I, Navarro-Moldes L. 2004. The effects of network topology on epidemic algorithms. Lecture Notes in Computer Science 3046: 177184.
  • Adamic LA. 1999. The small World Web. Lecture Notes in Computer Science 1696: 443452.
  • Ahmed E, Hegazi AS, Elgazzar AS. 2002. An epidemic model on small-world networks and ring vaccination. International Journal of Modern Physics C 13: 189198.
  • Albert R. 2005. Scale-free networks in cell biology. Journal of Cell Science 118: 49474957.
  • Albert R, Albert I, Nakarado GL. 2004. Structural vulnerability of the North American power grid. Physical Review E 69: 25103.
  • Albert R, Barabási A-L. 2002. Statistical mechanics of complex networks. Review of Modern Physics 74: 4797.
  • Albert R, Jeong H, Barabasi AL. 2000. Error and attack tolerance of complex networks. Nature 406: 378382.
  • Aloy P, Russell RB. 2004. Taking the mystery out of biological networks. EMBO Reports 5: 349350.
  • Amaral LAN, Scala A, Barthelemy M, Stanley HE. 2000. Classes of small-world networks. Proceedings of the National Academy of Sciences, USA 97: 1114911152.
  • Anderson RM, May RM. 1991. Infectious Diseases of Humans. Oxford, UK: Oxford University Press.
  • Andrade JS, Herrmann HJ, Andrade RFS, Da Silva LR. 2005. Apollonian networks: simultaneously scale-free, small world, Euclidean, space filling, and with matching graphs. Physical Review Letters 94, 018702: 14.
  • Antonovics J. 2005. Plant venereal diseases: insights from a messy metaphor. New Phytologist 165: 7180.
  • Arino J, Brauer F, Van Den Driessche P, Watmough J, Wu J. 2006. Simple models for containment of a pandemic. Interface 3: 453457.
  • Arita M. 2005. Scale-freeness and biological networks. Journal of Biochemistry 138: 14.
  • Asiegbu FO, Adomas A, Stenlid J. 2005. Pathogen profile – conifer root and butt rot caused by Heterobasidion annosum (Fr.) Bref. s.l. Molecular Plant Pathology 6: 395409.
  • Bacles CFE, Lowe AJ, Ennos RA. 2004. Genetic effects of chronic habitat fragmentation on tree species: the case of Sorbus aucuparia in a deforested Scottish landscape. Molecular Ecology 13: 573584.
  • Baiesi M, Paczuski M. 2005. Complex networks of earthquakes and aftershocks. Nonlinear Processes in Geophysics 12: 111.
  • Bailey DJ, Otten W, Gilligan CA. 2000. Saprotrophic invasion by the soil-borne fungal plant pathogen Rhizoctonia solani and percolation thresholds. New Phytologist 146: 535544.
  • Balthrop J, Forrest S, Newman MEJ, Williamson MM. 2004. Technological networks and the spread of computer viruses. Science 304: 527529.
  • Banke S, McDonald BA. 2005. Migration patterns among global populations of the pathogenic fungus Mycosphaerella graminicola. Molecular Ecology 14: 18811896.
  • Barabási AL, Albert R. 1999. Emergence of scaling in random networks. Science 286: 509512.
  • Barber MJ, Krueger A, Krueger T, Roediger-Schluga T. 2006. Network of European Union-funded collaborative research and development projects. Physical Review E 73, 036132: 113.
  • Barbour A, Mollison D. 1990. Epidemics and random graphs. In: GabrielJP, LefevreC, PicardP, eds. Stochastic processes in epidemic theory. New York, NY, USA: Springer, 8689.
  • Barrat A, Barthelemy M, Pastor-Satorras R, Vespignani A. 2004a. The architecture of complex weighted networks. Proceedings of the National Academy of Sciences, USA 101: 37473752.
  • Barrat A, Barthelemy M, Vespignani A. 2004b. Weighted evolving networks: coupling topology and weight dynamics. Physical Review Letters 92: 228701.
  • Barrat A, Weigt M. 2000. On the properties of small-world network models. European Physical Journal B 13: 547560.
  • Barthélemy M. 2003. Crossover from scale-free to spatial networks. Europhysics Letters 63: 915921.
  • Barthélemy M, Barrat A, Pastor-Satorras R, Vespignani A. 2004. Velocity and hierarchical spread of epidemic outbreaks in scale-free networks. Physical Review Letters 92, 178701: 14.
  • Barthélemy M, Barrat A, Pastor-Satorras R, Vespignani A. 2005. Dynamical patterns of epidemic outbreaks in complex heterogeneous networks. Journal of Theoretical Biology 235: 275288.
  • Bascompte J, Jordano P, Olesen JM. 2006. Asymmetric coevolutionary networks facilitate biodiversity maintenance. Science 312: 431433.
  • Bauch CT, Galvani AP. 2003. Using network models to approximate spatial point-process models. Mathematical Biosciences 184: 101114.
  • Bauch CT, Lloyd-Smith JO, Coffee MP, Galvani AP. 2005. Dynamically modeling SARS and other newly emerging respiratory illnesses – past, present, and future. Epidemiology 16: 791801.
  • Bell DC, Montoya ID, Atkinson JS, Yang SJ. 2002. Social networks and forecasting the spread of HIV infection. Journal of Acquired Immune Deficiency Syndromes 31: 218229.
  • Berntson GM, Stoll P. 1997. Correcting for finite spatial scales of self-similarity when calculating the fractal dimensions of real-world structures. Proceedings of the Royal Society of London B 264: 15311537.
  • Bialozyt R, Ziegenhagen B, Petit RJ. 2006. Contrasting effects of long distance seed dispersal on genetic diversity during range expansion. Journal of Evolutionary Biology 19: 1220.
  • Bian L. 2004. A conceptual framework for an individual-based spatially explicit epidemiological model. Environment and Planning B 31: 381395.
  • Bicout DJ, Sache I. 2003. Dispersal of spores following a persistent random walk. Physical Review E 67, 031913: 17.
  • Blyuss KB. 2005. On a model of spatial spread of epidemics with long-distance travel. Physics Letters A 345: 129136.
  • Boddy L. 2000. Interspecific combative interactions between wood-decaying basidiomycetes. FEMS Microbiology Ecology 31: 185194.
  • Boginski V, Butenko S, Pardalos PM. 2005. Statistical analysis of financial networks. Computational Statistics and Data Analysis 48: 431443.
  • Boguñá M, Pastor-Satorras R, Vespignani A. 2003. Absence of epidemic threshold in scale-free networks with degree correlations. Physical Review Letters 90, 028701: 14.
  • Boguñá M, Serrano MA. 2005. Generalized percolation in random directed networks. Physical Review E 72, 016106: 17.
  • Bolker BM. 1999. Analytic models for the patchy spread of plant disease. Bulletin of Mathematical Biology 61: 849874.
  • Bollobás B. 1979. Graph theory: an introductory course. New York, NY, USA: Springer.
  • Bollobás B. 1985. Random graphs. London, UK: Academic Press.
  • Bornholdt S, Ebel H. 2001. World Wide Web scaling exponent from Simon's 1955 model. Physical Review E 64, 035104: 14.
  • Boyer D, Ramos-Fernández G, Miramontes O, Mateos JL, Cocho G, Larralde H, Ramos H, Rojas F. 2006. Scale-free foraging by primates emerges from their interaction with a complex environment. Proceedings of the Royal Society of London B 273: 17431750.
  • Brauer F. 2005. The Kermack-McKendrick epidemic model revisited. Mathematical Biosciences 198: 119131.
  • Breukers A, Kettenis DL, Mourits M, Van Der Werf W, Lansink AO. 2006. Individual-based models in the analysis of disease transmission in plant production chains: an application to potato brown rot. Agricultural Systems 90: 112131.
  • Brito D, Grelle CED. 2004. Effectiveness of a reserve network for the conservation of the endemic marsupial Micoureus travassosi. Atlantic Forest remnants in southeastern Brazil. Biodiversity and Conservation 13: 25192536.
  • Brockmann D, Hufnagel L, Geisel T. 2006. The scaling laws of human travel. Nature 439: 462465.
  • Brooks CP. 2006. Quantifying population substructure: extending the graph-theoretic approach. Ecology 87: 864872.
  • Brown JKM, Hovmøller MS. 2002. Aerial dispersal of pathogens on the global and continental scales and its impact on plant disease. Science 297: 537541.
  • Buckee CO, Koelle K, Mustard MJ, Gupta S. 2004. The effects of host contact network structure on pathogen diversity and strain structure. Proceedings of the National Academy of Sciences, USA 101: 1083910844.
  • Buhl J, Gautrais J, Sole RV, Kuntz P, Valverde S, Deneubourg JL, Theraulaz G. 2004. Efficiency and robustness in ant networks of galleries. European Physical Journal B 42: 123129.
  • Burdon JJ, Thrall PH, Ericson L. 2006. The current and future dynamics of disease in plant communities. Annual Review of Phytopathology 44: 1939.
  • Cairney JWG. 2005. Basidiomycete mycelia in forest soils: dimensions, dynamics and roles in nutrient distribution. Mycological Research 109: 720.
  • Cancho RFI, Janssen C, Solé RV. 2001. Topology of technology graphs: small world patterns in electronic circuits. Physical Review E 64, 046119: 14.
  • Cancho RFI, Solé RV. 2001. The small world of human language. Proceedings of the Royal Society of London B 268: 22612265.
  • Capocci A, Servedio VDP, Colaiori F, Buriol LS, Donato D, Leonardi S, Caldarelli G. 2006. Preferential attachment in the growth of social networks: the internet encyclopedia Wikipedia. Physical Review E 74, 036116: 16.
  • Cerdeira JO, Gaston KJ, Pinto LS. 2005. Connectivity in priority area selection for conservation. Environmental Modelling and Assessment 10: 183192.
  • Chan KP, Zheng DF, Hui PM. 2004. Effects of aging and links removal on epidemic dynamics in scale-free networks. International Journal of Modern Physics B 18: 25342539.
  • Chandra AK, Dasgupta S. 2005. A small world network of prime numbers. Physica A 357: 436446.
  • Chang DB, Young CS. 2005. Infection dynamics on the Internet. Computer and Security 24: 280286.
  • Chartrand G. 1985. Introductory graph theory. New York, NY, USA: Dover Publications.
  • Chassin DP, Posse C. 2005. Evaluating North American electric grid reliability using the Barabasi-Albert network model. Physica A 355: 667677.
  • Chavez M, Hwang DU, Amann A, Boccaletti S. 2006. Synchronizing weighted complex networks. Chaos 16, 015106: 17.
  • Chen W-K. 1997. Graph theory and its engineering applications. Chicago, IL, USA: World Scientific.
  • Christley RM, French NP. 2003. Small-world topology of UK racing: the potential for rapid spread of infectious agents. Equine Veterinary Journal 35: 586589.
  • Christley RM, Pinchbeck GL, Bowers RG, Clancy D, French NP, Bennett R, Turner J. 2005. Infection in social networks: using network analysis to identify high-risk individuals. American Journal of Epidemiology 162: 10241031.
  • Coelho R, Neda Z, Ramasco JJ, Santos MA. 2005. A family-network model for wealth distribution in societies. Physica A 353: 515528.
  • Cohen R, Havlin S, Ben-Avraham D. 2003. Efficient immunization strategies for computer networks and populations. Physical Review Letters 91, 247901: 14.
  • Colizza V, Barrat A, Barthélemy M, Vespignani A. 2006a. The modeling of global epidemics: Stochastic dynamics and predictability. Bulletin of Mathematical Biology 68: 18931921.
  • Colizza V, Barrat A, Barthélemy M, Vespignani A. 2006b. The role of the airline transportation network in the prediction and predictability of global epidemics. Proceedings of the National Academy of Sciences, USA 103: 20152020.
  • Costa LD, Travieso G, Ruggiero CA. 2005. Complex grid computing. European Physical Journal B 44: 119128.
  • Croft DP, James R, Ward AJW, Botham MS, Mawdsley D, Krause J. 2005. Assortative interactions and social networks in fish. Oecologia 143: 211219.
  • Croft DP, Krause J, James R. 2004. Social networks in the guppy (Poecilia reticulata). Proceedings of the Royal Society of London B 271: S516S519.
  • Cross PC, Lloyd-Smith JO, Bowers JA, Hay CT, Hofmeyr M, Getz WM. 2004. Integrating association data and disease dynamics in a social ungulate: bovine tuberculosis in African buffalo in the Kruger National Park. Annales Zoologici Fennici 41: 879892.
  • Crucitti P, Latora V, Marchiori M. 2004. A topological analysis of the Italian electric power grid. Physica A 338: 9297.
  • Crucitti P, Latora V, Marchiori M, Rapisarda A. 2003. Efficiency of scale-free networks: error and attack tolerance. Physica A 320: 622642.
  • Dall’Asta L. 2005. Inhomogeneous percolation models for spreading phenomena in random graphs. Journal of Statistical Mechanics – Theory and Experiment P08011: 138.
  • Dall’Asta L, Barrat A, Barthelemy M, Vespignani A. 2006. Vulnerability of weighted networks. Journal of Statistical Mechanics – Theory and Experiment P04006: 112.
  • Daughtrey ML, Benson DM. 2005. Principles of plant health management for ornamental plants. Annual Review Phytopathology 43: 141169.
  • Davidson FA, Sleeman BD, Rayner ADM, Crawford JW, Ritz K. 1996. Large-scale behavior of fungal mycelia. Mathematical and Computer Modelling 24: 8187.
  • De Silva E, Stumpf MPH. 2005. Complex networks and simple models in biology. Interface 2: 419430.
  • De P, Singh AE, Wong T, Yacoub W, Jolly AM. 2004. Sexual network analysis of a gonorrhoea outbreak. Sexually Transmitted Infections 80: 280285.
  • Dehnen-Schmutz K, Touza J, Perrings C, Williamson M. 2007. The horticultural trade and ornamental plant invasions in Britain. Conservation Biology 21: 224231.
  • Dezső Z, Barabási AL. 2002. Halting viruses in scale-free networks. Physical Review E 65, 055103: 14.
  • Di Matteo T, Aste T, Gallegati M. 2005. Innovation flow through social networks: productivity distribution in France and Italy. European Physical Journal B 47: 459466.
  • Dorogovtsev SN, Mendes JFF. 2002. Evolution of networks. Advances in Physics 51: 10791187.
  • Duan WQ, Chen Z, Liu ZR, Jin W. 2005. Efficient target strategies for contagion in scale-free networks. Physical Review E 72, 026133: 15.
  • Dumroese RK, James RL. 2005. Root diseases in bareroot and container nurseries of the Pacific Northwest: epidemiology, management, and effects on outplanting performance. New Forests 30: 185202.
  • Dunne JA, Williams RJ, Martinez ND. 2002. Food-web structure and network theory: the role of connectance and size. Proceedings of the National Academy of Sciences, USA 99: 1291712922.
  • Dybiec B, Kleczkowski A, Gilligan CA. 2004. Controlling disease spread on networks with incomplete knowledge. Physical Review E 70, 066145: 15.
  • Eames KTD, Keeling MJ. 2002. Modeling dynamic and network heterogeneities in the spread of sexually transmitted diseases. Proceedings of the National Academy of Sciences, USA 99: 1333013335.
  • Eames KTD, Keeling MJ. 2003. Contact tracing and disease control. Proceedings of the Royal Society of London B 270: 25652571.
  • Ebel H, Mielsch LI, Bornholdt S. 2002. Scale-free topology of e-mail networks. Physical Review E 66, 035103: 14.
  • Edman M, Gustafsson M, Stenlid J, Ericson L. 2004. Abundance and viability of fungal spores along a forestry gradient – responses to habitat loss and isolation? Oikos 104: 3542.
  • Eguíluz VM, Klemm K. 2002. Epidemic threshold in structured scale-free networks. Physical Review Letters 89, 108701: 14.
  • Erdos P, Renyi A. 1960. On the evolution of random graphs. Publication of the Mathematical Institute of the Hungarian Academy of Sciences 5: 1761.
  • Erickson RO. 1945. The Clematis fremontii var riehlii population in the Ozarks. Annals of the Missouri Botanical Garden 30: 6368.
  • Estrada-Peña A. 2003. The relationships between habitat topology, critical scales of connectivity and tick abundance Ixodes ricinus in a heterogeneous landscape in northern Spain. Ecography 26: 661671.
  • Eubank S, Guclu H, Kumar VSA, Marathe MV, Srinivasan A, Toroczkai Z, Wang N. 2004. Modelling disease outbreaks in realistic urban social networks. Nature 429: 180184.
  • Favier C, Schmit D, Muller-Graf CDM, Cazelles B, Degallier N, Mondet B, Dubois MA. 2005. Influence of spatial heterogeneity on an emerging infectious disease: the case of dengue epidemics. Proceedings of the Royal Society of London B 272: 11711177.
  • Ferguson NM, Cummings DAT, Cauchemez S, Fraser C, Riley S, Meeyai A, Iamsirithaworn S, Burke DS. 2005. Strategies for containing an emerging influenza pandemic in Southeast Asia. Nature 437: 209214.
  • Ferrandino FJ. 1993. Dispersive epidemic waves. 1. Focus expansion within a linear planting. Phytopathology 83: 795802.
  • Ferrari MJ, Bansal S, Meyers LA, Bjornstad ON. 2006. Network frailty and the geometry of herd immunity. Proceedings of the Royal Society of London B 273: 274327488.
  • Filipe JAN, Maule MM. 2004. Effects of dispersal mechanisms on spatio-temporal development of epidemics. Journal of Theoretical Biology 226: 125141.
  • Fortuna MA, Gómez-Rodríguez C, Bascompte J. 2006. Spatial network structure and amphibian persistence in stochastic environments. Proceedings of the Royal Society of London B 273: 14291434.
  • Franc A. 2004. Metapopulation dynamics as a contact process on a graph. Ecological Complexity 1: 4963.
  • Frank K. 2004. Ecologically differentiated rules of thumb for habitat network design – lessons from a formula. Biodiversity and Conservation 13: 189206.
  • Frasca M, Buscarino A, Rizzo A, Fortuna L, Boccaletti S. 2006. Dynamical network model of infective mobile agents. Physical Review E 74, 036110: 15.
  • Friesen TL, Stukenbrock EH, Liu Z, Meinhardt S, Ling H, Faris JD, Rasmussen JB, Solomon PS, McDonald BA, Oliver RP. 2006. Emergence of a new disease as a result of interspecific virulence gene transfer. Nature Genetics 38: 953956.
  • Gallos LK, Argyrakis P. 2003. Distribution of infected mass in disease spreading in scale-free networks. Physica A 330: 117123.
  • Garrett KA, Hulbert SH, Leach JE, Travers SE. 2006. Ecological genomics and epidemiology. European Journal of Plant Pathology 115: 3551.
  • Garrett KA, Madden LV, Hughes G, Pfender WF. 2004. New applications of statistical tools in plant pathology. Phytopathology 94: 9991003.
  • Geils BW. 1992. Analyzing landscape patterns caused by forest pathogens: a review of the literature. In: FrankleS, ed. Proceedings of the 40th Western International Forest Disease Work Conference. Durango, CO, USA: USDA, Forest Service, Pacific Southwest Region, 2132.
  • Germann TC, Kadau K, Longini IM Jr, Macken CA. 2006. Mitigation strategies for pandemic influenza in the United States. Proceedings of the National Academy of Sciences, USA 103: 59355940.
  • Giani U, Romano A, Bruzzese D. 2005. An epidemiological model of knowledge diffusion in virtual learning networks: an application to learning statistics in medicine. Cybernetics and Systems 36: 445456.
  • Gibson GJ. 1997. Investigating mechanisms of spatiotemporal epidemic spread using stochastic models. Phytopathology 87: 139146.
  • Giesecke J. 1994. Modern infectious disease epidemiology. London, UK: Edward Arnold.
  • Gilbert M, Guichard S, Freise J, Gregoire JC, Heitland W, Straw N, Tilbury C, Augustin S. 2005. Forecasting Cameraria ohridella invasion dynamics in recently invaded countries: from validation to prediction. Journal of Applied Ecology 42: 805813.
  • Gilligan CA. 2002. An epidemiological framework for disease management. Advances in Botanical Research 38: 164.
  • Giménez-Jaime A, Aroca A, Raposo R, García-Jiménez Armengol J. 2006. Occurrence of fungal pathogens associated with grapevine nurseries and the decline of young vines in Spain. Journal of Phytopathology 154: 598602.
  • Gonçalves S, Kuperman M. 2003. The social behavior and the evolution of sexually transmitted diseases. Physica A 328: 225232.
  • González MC, Herrmann HJ. 2004. Scaling of the propagation of epidemic in a system of mobile agents. Physica A 340: 741748.
  • Gorman SP, Malecki EJ. 2000. The networks of the Internet: an analysis of provider networks in the USA. Telecommunications Policy 24: 113134.
  • Grabowski A, Kosiński RA. 2004. Epidemic spreading in a hierarchical social network. Physical Review E 70, 031908: 17.
  • Graham I, Matthai CC. 2003. Investigation of the forest-fire model on a small-world network. Physical Review E 68, 036109: 17.
  • Green DM, Kiss IZ, Kao RR. 2006. Parameterization of individual-based models: comparisons with deterministic mean-field models. Journal of Theoretical Biology 239: 289297.
  • Green DG, Sadedin S. 2005. Interactions matter – complexity in landscapes and ecosystems. Ecological Complexity 2: 117130.
  • Grotkopp E, Rejmanek M, Rost TL. 2002. Toward a causal explanation of plant invasiveness: seedling growth and life-history strategies of 29 pine (Pinus) species. American Naturalist 159: 396419.
  • Grünig CR, Duò A, Sieber TN. 2006. Population genetic analysis of Phialocephala fortinii s.l. and Acephala applanata in two undisturbed forests in Switzerland and evidence for new cryptic species. Fungal Genetics and Biology 43: 410421.
  • Guimerá R, Mossa S, Turtschi A, Amaral LAN. 2005. The worldwide air transportation network: anomalous centrality, community structure, and cities’ global roles. Proceedings of the National Academy of Sciences, USA 102: 77947799.
  • Hamilton MA, Murray BR, Cadotte MW, Hose GC, Baker AC, Harris CJ, Licari D. 2005. Life-history correlates of plant invasiveness at regional and continental scales. Ecology Letters 8: 10661074.
  • Hanski I. 1994. Spatial scale, patchiness and population dynamics on land. Philosophical Transactions of the Royal Society of London B 343: 1925.
  • Hardham AR. 2005. Pathogen profile –Phytophthora cinnamomi. Molecular Plant Pathology 6: 589604.
  • Harris TE. 1974. Contact interactions on a lattice. Annals of Probability 2: 969988.
  • Haydon DT, Chase-Topping M, Shaw DJ, Matthews L, Friar JK, Wilesmith J, Woolhouse MEJ. 2003. The construction and analysis of epidemic trees with reference to the 2001 UK foot-and-mouth outbreak. Proceedings of the Royal Society of London B 270: 121127.
  • He SA. 2002. Fifty years of botanical gardens in China. Acta Botanica Sinica 44: 11231133.
  • Heesterbeek JAP. 2002. A brief history of R-0 and a recipe for its calculation. Acta Biotheoretica 50: 189204.
  • Heesterbeek JAP, Zadoks JC. 1987. Modelling pandemics of quarantine pests and diseases: problems and perspectives. Crop Protection 6: 211221.
  • Hethcote HV. 2000. The mathematics of infectious disease. Society for Industrial and Applied Mathematics Review 42: 599653.
  • Hetherington AM, Woodward FI. 2003. The role of stomata in sensing and driving environmental change. Nature 424: 901908.
  • Holdenrieder O, Greig BJW. 1998. Biological methods of control. In: WoodwardS, StenlidJ, KarjalainenK, HuttermannA, eds. Heterobasidion annosum. biology, ecology, impact and control. Wallingford, UK: CAB International, 235258.
  • Holdenrieder O, Pautasso M, Weisberg PJ, Lonsdale D. 2004. Tree diseases and landscape processes: the challenge of landscape pathology. Trends in Ecology and Evolution 19: 446452.
  • Holme P. 2004. Efficient local strategies for vaccination and network attack. Europhysics Letters 68: 908914.
  • Huerta R, Tsimring LS. 2002. Contact tracing and epidemics control in social networks. Physical Review E 66, 056115: 1–4.
  • Hufnagel L, Brockmann D, Geisel T. 2004. Forecast and control of epidemics in a globalized world. Proceedings of the National Academy of Sciences, USA 101: 1512415129.
  • Humphries MD, Gurney K, Prescott TJ. 2006. The brainstem reticular formation is a small-world, not scale-free, network. Proceedings of the Royal Society of London B 273: 503511.
  • Hwang DU, Boccaletti S, Moreno Y, Lopez-Ruiz R. 2005. Thresholds for epidemic outbreaks in finite scale-free networks. Mathematical Biosciences and Engineering 2: 317327.
  • Ingram DS. 1999. Biodiversity, plant pathogens and conservation. Plant Pathology 48: 433442.
  • James A, Pitchford JW, Plank MJ. 2007. An event-based model of superspreading in epidemics. Proceedings of the Royal Society of London B 274: 741747.
  • Jeger MJ. 1986. Asymptotic behaviour and threshold criteria in model plant disease epidemics. Plant Pathology 35: 355361.
  • Jeger MJ. 1989. Spatial components of plant disease epidemics. Englewood Cliffs, NJ, USA: Prentice Hall.
  • Jeger MJ. 1999. Improved understanding of dispersal in crop pest and disease management: current status and future directions. Agricultural and Forest Meteorology 97: 331349.
  • Jeger MJ. 2004. Analysis of disease progress as a basis for evaluating disease management practices. Annual Review of Phytopathology 42: 6182.
  • Jeger MJ, Van Den Bosch F. 1994. Threshold criteria for model-plant disease epidemics. 2. Persistence and endemicity. Phytopathology 84: 2830.
  • Jeong H, Tombor B, Albert R, Oltvai ZN, Barabási A-L. 2000. The large-scale organization of metabolic networks. Nature 407: 651654.
  • Jezewski W. 2005. Scale-free properties of weighted networks with connectivity-driven topology. Physica A 354: 672680.
  • Jiang B, Claramunt C. 2004. Topological analysis of urban street networks. Environment and Planning B 31: 151162.
  • Jock S, Donat V, López MM, Bazzi C, Geider K. 2002. Following spread of fire blight in Western, Central and Southern Europe by molecular differentiation of Erwinia amylovora strains with PFGE analysis. Environmental Microbiology 4: 106114.
  • Jolly AM, Moffatt MEK, Fast MV, Brunham RC. 2005. Sexually transmitted disease thresholds in Manitoba, Canada. Annals of Epidemiology 151: 781788.
  • Jones JH, Handcock MS. 2003. An assessment of preferential attachment as a mechanism for human sexual network formation. Proceedings of the Royal Society of London B 270: 11231128.
  • Jones GD, Perrings CA, MacLeod A. 2005. The spread of Frankliniella occidentalis through the UK protected horticulture sector – scales and processes. In: AlfordDV, BackhausGF, eds. Plant protection and plant health in Europe. Introduction and Spread of Invasive Species Symposium. Berlin, Germany: Humboldt University, 1318.
  • Joo J, Lebowitz JL. 2004. Behavior of susceptible-infected-susceptible epidemics on heterogeneous networks with saturation. Physical Review E 69, 066105: 16.
  • Jordano P, Bascompte J, Olesen JM. 2003. Invariant properties in co-evolutionary networks of plant–animal interactions. Ecology Letters 6: 6981.
  • Jung T, Blaschke M. 2004. Phytophthora root and collar rot of alders in Bavaria: distribution, modes of spread and possible management strategies. Plant Pathology 53: 197208.
  • Kao RR. 2006. Evolution of pathogens towards low R0 in heterogeneous populations. Journal of Theoretical Biology 242: 634642.
  • Károlyi G. 2005. Fractal scaling of microbial colonies affects growth. Physical Review E 71, 031915: 16.
  • Keeling MJ. 1999. The effects of local spatial structure on epidemiological invasions. Proceedings of the Royal Society of London B 266: 859867.
  • Keeling MJ. 2005a. Models of foot-and-mouth disease. Proceedings of the Royal Society of London B 272: 11951202.
  • Keeling MJ. 2005b. The implications of network structure for epidemic dynamics. Theoretical Population Biology 67: 18.
  • Keeling MJ. 2005c. Extensions to mass-action mixing. In: CuddingtonK, BeisnerBE, eds. Ecological paradigms lost. Routes of theory change. Amsterdam, the Netherlands: Elsevier, 107142.
  • Keeling MJ, Eames KTD. 2005. Networks and epidemic models. Interface 2: 295307.
  • Keeling MJ, Woolhouse MEJ, May RM, Davies G, Grenfell BT. 2003. Modelling vaccination strategies against foot-and-mouth disease. Nature 421: 136142.
  • Khanin R, Wit E. 2006. How scale-free are biological networks? Journal of Computational Biology 13: 810818.
  • Killingback T, Blok HJ, Doebeli M. 2006. Scale-free extinction dynamics in spatially structured host-parasitoid systems. Journal of Theoretical Biology 241: 745750.
  • Kinney R, Crucitti P, Albert R, Latora V. 2005. Modeling cascading failures in the North American power grid. European Physical Journal B 46: 101107.
  • Kirk WDJ, Terry LI. 2003. The spread of the western flower thrips Frankliniella occidentalis (Pergande). Agricultural and Forest Entomology 5: 301310.
  • Kiss IZ, Green DM, Kao RR. 2005. Disease contact tracing in random and clustered networks. Proceedings of the Royal Society of London B 272: 14071414.
  • Kiss IZ, Green DM, Kao RR. 2006a. Infectious disease control using contact tracing in random and scale-free networks. Interface 3: 5562.
  • Kiss IZ, Green DM, Kao RR. 2006b. The network of sheep movements within Great Britain: network properties and their implications for infectious disease spread. Interface 3: 669677.
  • Klein DA, Paschke MW. 2004. Filamentous fungi: the indeterminate lifestyle and microbial ecology. Microbial Ecology 47: 224235.
  • Koopman J. 2004. Modeling infection transmission. Annual Review of Public Health 25: 303326.
  • Kosiński RA, Adamowski L. 2004. Influence of the initial source of epidemic and preventive vaccination on the spreading phenomena in a two-dimensional lattice. International Journal of Modern Physics C 15: 755765.
  • Kretzschmar M. 2000. Sexual network structure and sexually transmitted disease prevention: a modeling perspective. Sexually Transmitted Diseases 27: 627635.
  • Kunin WE. 1998. Extrapolating species abundance across spatial scales. Science 281: 15131515.
  • Kunin V, Goldovsky L, Darzentas N, Ouzounis CA. 2005. The net of life: reconstructing the microbial phylogenetic network. Genome Research 15: 954959.
  • Kuperman M, Abramson G. 2001. Small world effect in an epidemiological model. Physical Review Letters 86: 29092912.
  • Lázaro A, Mark S, Olesen JM. 2005. Bird-made fruit orchards in northern Europe: nestedness and network properties. Oikos 110: 321329.
  • Le Corre V, Machon N, Petit RJ, Kremer A. 1997. Colonization with long-distance seed dispersal and genetic structure of maternally inherited genes in forest trees: a simulation study. Genetical Research 69: 117125.
  • Lee SH, Kim PJ, Jeong H. 2006. Statistical properties of sampled networks. Physical Review E 73: 16102.
  • Lennon JJ, Kunin WE, Hartley S. 2002. Fractal species distributions do not produce power-law species-area relationships. Oikos 97: 378386.
  • Liljeros F. 2004. Sexual networks in contemporary Western societies. Physica A 338: 238245.
  • Liljeros F, Edling CR, Amaral LAN. 2003. Sexual networks: implications for the transmission of sexually transmitted infections. Microbes & Infection 5: 189196.
  • Liljeros F, Edling CR, Amaral LAN, Stanley HE, Aberg Y. 2001. The web of human sexual contacts. Nature 411: 907908.
  • Liu Z, Hu B. 2005. Epidemic spreading in community networks. Europhysics Letters 72: 315321.
  • Liu ZH, Lai YC, Ye N. 2003. Propagation and immunization of infection on general networks with both homogeneous and heterogeneous components. Physical Review E 67, 031911: 15.
  • Liu JZ, Wu JS, Yang ZR. 2004. The spread of infectious disease on complex networks with household structure. Physica A 341: 273280.
  • Lloyd-Smith JO, Schreiber SJ, Kopp PE, Getz WM. 2005. Superspreading and the effect of individual variation on disease emergence. Nature 438: 355359.
  • Longini IM, Nizam A, Xu SF, Ungchusak K, Hanshaoworakul W, Cummings DAT, Halloran ME. 2005. Containing pandemic influenza at the source. Science 309: 10831087.
  • Lundgren R, Olesen JM. 2005. The dense and highly connected world of Greenland's plants and their pollinators. Arctic, Antarctic and Alpine Research 37: 514520.
  • Lundquist JE, Hamelin RC. 2005. Forest pathology – from genes to landscapes. St Paul, MN, USA: American Phytopathological Society.
  • Madar N, Kalisky T, Cohen R, Ben-Avraham D, Havlin S. 2004. Immunization and epidemic dynamics in complex networks. European Physical Journal B 38: 269276.
  • Mamaev SA, Andreev LN. 1996. Importance of Russian botanical gardens for preservation of floristic diversity. Russian Journal of Ecology 27: 432437.
  • Manel S, Schwartz MK, Luikart G, Taberlet P. 2003. Landscape genetics: combining landscape ecology and population genetics. Trends in Ecology & Evolution 18: 189197.
  • Marchand PJ, Goulet FL, Harrington TC. 1986. Death by attrition – a hypothesis for wave mortality of sub-alpine Abies balsamea. Canadian Journal of Forest Research 16: 591596.
  • Masuda N, Konno N, Aihara K. 2004. Transmission of severe acute respiratory syndrome in dynamical small-world networks. Physical Review E 69, 031917: 16.
  • Matsuyama S, Kunigami M, Terano T. 2005. Multi-agent modeling of peer to peer communication with scale-free and small-world properties. Lecture Notes in Computer Science 3684: 772778.
  • Matthäus F. 2006. Diffusion versus network models as descriptions for the spread of prion diseases in the brain. Journal of Theoretical Biology 240: 104113.
  • Matthews L, Woolhouse M. 2005. New approaches to quantifying the spread of infection. Nature Review of Microbiology 3: 529536.
  • May RM. 2006. Network structure and the biology of populations. Trends in Ecology and Evolution 21: 394399.
  • May RM, Lloyd AL. 2001. Infection dynamics on scale-free networks. Physical Review E 64: 66112.
  • McLeod G, Gries R, Von Reuß SH, Rahe JE, McIntosh R, König WA, Gries G. 2005. The pathogen causing Dutch elm disease makes host trees attract insect vectors. Proceedings of the Royal Society of London B 272: 24992503.
  • Meentemeyer R, Rizzo D, Mark W, Lotz E. 2004. Mapping the risk of establishment and spread of sudden oak death in California. Forest Ecology and Management 200: 195214.
  • Menkis A, Vasiliauskas R, Taylor AFS, Stenström E, Stenlid J, Finlay R. 2006. Fungi in decayed roots of conifer seedlings in forest nurseries, afforested clear-cuts and abandoned farmland. Plant Pathology 55: 117129.
  • Meyers LA, Newman MEJ, Martin M, Schrag S. 2003. Applying network theory to epidemics: control measures for Mycoplasma pneumoniae outbreaks. Emerging Infectious Diseases 9: 204210.
  • Meyers LA, Newman MEJ, Pourbohloul B. 2006. Predicting epidemics on directed contact networks. Journal of Theoretical Biology 240: 400418.
  • Meyers LA, Pourbohloul B, Newman MEJ, Skowronski DM, Brunham RC. 2005. Network theory and SARS: predicting outbreak diversity. Journal of Theoretical Biology 232: 7181.
  • Mihail JD, Bruhn JN. 2005. Foraging behaviour of Armillaria rhizomorph systems. Mycological Research 109: 11951207.
  • Milgram S. 1967. The small world problem. Psychology Today 2: 6067.
  • Milgroom MG, Cortesi P. 2004. Biological control of chestnut blight with hypovirulence: a critical analysis. Annual Review of Phytopathology 42: 311338.
  • Miramontes O, Luque B. 2002. Dynamical small-world behavior in an epidemical model of mobile individuals. Physica D 168: 379385.
  • Mollison D. 1977. Spatial contact models for ecological and epidemic spread. Journal of the Royal Statistical Society B 39: 283326.
  • Montoya JM, Pimm SL, Solé RV. 2006. Ecological networks and their fragility. Nature 442: 259264.
  • Moore C, Newman MEJ. 2000. Epidemics and percolation in small-world networks. Physical Review E 61: 56785682.
  • Moreno Y, Gómez JB, Pacheco AF. 2002a. Instability of scale-free networks under node-breaking avalanches. Europhysics Letters 58: 630636.
  • Moreno Y, Nekovee M, Vespignani A. 2004. Efficiency and reliability of epidemic data dissemination in complex networks. Physical Review E 69, 055101: 14.
  • Moreno Y, Pastor-Satorras R, Vespignani A. 2002b. Epidemic outbreaks in complex heterogeneous networks. European Physical Journal B 26: 521529.
  • Moreno Y, Vázquez A. 2003. Disease spreading in structured scale-free networks. European Physical Journal B 31: 265271.
  • Morita S. 2006. Crossovers in scale-free networks on geographical space. Physical Review E 73, 035104: 14.
  • Moritz MA, Odion DC. 2005. Examining the strength and possible causes of the relationship between fire history and Sudden Oak Death. Oecologia 144: 106114.
  • Motter AE. 2004. Cascade control and defense in complex networks. Physical Review Letters 93, 098701: 14.
  • Moukarzel CF. 1999. Spreading and shortest paths in systems with sparse long-range connections. Physical Review E 60: R6263R6266.
  • Nakamaru M, Levin SA. 2004. Spread of two linked social norms on complex interaction networks. Journal of Theoretical Biology 230: 5764.
  • Neilson RP, Pitelka LF, Solomon AM, Nathan R, Midgley GF, Fragoso JMV, Lischke H, Thompson K. 2005. Forecasting regional to global plant migration in response to climate change. Bioscience 55: 749759.
  • Newman MEJ. 2001. The structure of scientific collaboration networks. Proceedings of the National Academy of Sciences, USA 98: 404409.
  • Newman MEJ. 2002. Spread of epidemic disease on networks. Physical Review E 66, 016128: 111.
  • Newman MEJ. 2003. The structure and function of complex networks. Society for Industrial and Applied Mathematics Review 45: 167256.
  • Newman MEJ. 2005a. Power laws, Pareto distributions and Zipf's law. Contemporary Physics 46: 323351.
  • Newman MEJ. 2005b. Threshold effects for two pathogens spreading on a network. Physical Review Letters 95, 108701: 14.
  • Newman MEJ, Forrest S, Balthrop J. 2002. E-mail networks and the spread of computer viruses. Physical Review E 66, 035101: 14.
  • Newman MEJ, Strogatz SH, Watts DJ. 2001. Random graphs with arbitrary degree distributions and their applications. Physical Review E 64, 026118: 117.
  • Nunes A, Telo da Gama MM, Gomes MGM. 2006. Localized contacts between hosts reduce pathogen diversity. Journal of Theoretical Biology 241: 477487.
  • Olinky R, Stone L. 2004. Unexpected epidemic thresholds in heterogeneous networks: the role of disease transmission. Physical Review E 70, 030902: 14.
  • Ormerod P, Roach AP. 2004. The Medieval inquisition: scale-free networks and the suppression of heresy. Physica A 339: 645652.
  • Otten W, Bailey DJ, Gilligan CA. 2004. Empirical evidence of spatial thresholds to control invasion of fungal parasites and saprotrophs. New Phytologist 163: 125132.
  • Otten W, Filipe JAN, Gilligan CA. 2005. Damping-off epidemics, contact structure, and disease transmission in mixed-species populations. Ecology 86: 19481957.
  • Palotai Z, Farkas C, Lorincz A. 2005. Selection in scale-free small world. Lecture Notes in Computer Science 3690: 579582.
  • Parham PE, Ferguson NM. 2006. Space and contact networks: capturing the dynamics of disease transmission. Interface 3: 483493.
  • Park AW, Gubbins S, Gilligan CA. 2001. Invasion and persistence of plant parasites in a spatially structured host population. Oikos 94: 162174.
  • Park AW, Gubbins S, Gilligan CA. 2002. Extinction times for closed epidemics: the effects of host spatial structure. Ecology Letters 5: 747755.
  • Parke JL, Linderman RG, Osterbauer NK, Griesbach JA. 2004. Detection of Phytophthora ramorum blight in Oregon nurseries and completion of Koch's postulates on Pieris, Rhododendron, Viburnum and Camelia. Plant Disease 88: 8787.
  • Parnell S, Van Den Bosch F, Gilligan CA. 2006. Large-scale fungicide spray heterogeneity and the regional spread of resistant pathogen strains. Phytopathology 96: 549555.
  • Pastor-Satorras R, Vazquez A, Vespignani A. 2001. Dynamical and correlation properties of the Internet. Physical Review Letters 87, 258701: 14.
  • Pastor-Satorras R, Vespignani A. 2001a. Epidemic dynamics and endemic states in complex networks. Physical Review E 63, 066117: 18.
  • Pastor-Satorras R, Vespignani A. 2001b. Epidemic spreading in scale-free networks. Physical Review Letters 86: 32003203.
  • Pastor-Satorras R, Vespignani A. 2002a. Epidemic dynamics in finite size scale-free networks. Physical Review E 65, 035108: 14.
  • Pastor-Satorras R, Vespignani A. 2002b. Immunization of complex networks. Physical Review E 65, 036104: 18.
  • Pautasso M, Holdenrieder O, Stenlid J. 2005. Susceptibility to fungal pathogens of forests differing in tree diversity. In: Scherer-LorenzenM, KoernerCh, SchulzeD, eds. Forest diversity and function: temperate and boreal systems. Berlin, Germany: Springer, 263289.
  • Perrings C, Dehnen-Schmutz K, Touza J, Williamson M. 2005. How to manage biological invasions under globalization. Trends in Ecology and Evolution 20: 212215.
  • Petermann T, De Los Rios P. 2004. Role of clustering and gridlike ordering in epidemic spreading. Physical Review E 69, 066116: 114.
  • Petit RJ, Bialozyt R, Garnier-Géré P, Hampe A. 2004. Ecology and genetics of tree invasions: from recent introductions to Quaternary migrations. Forest Ecology and Management 197: 117137.
  • Pinto PM, Alonso JAP, Fernandez VP, Casero JJD. 2006. Fungi isolated from diseased nursery seedlings in Spain. New Forests 31: 4156.
  • Porter MA, Mucha PJ, Newman MEJ, Warmbrand CM. 2005. A network analysis of committees in the US House of Representatives. Proceedings of the National Academy of Sciences, USA 102: 70577062.
  • Porterie B, Zekri N, Clerc JP, Loraud JC. 2005. Un réseau de petit monde local à sites pondérés pour les feux de forêts. Comptes Rendus de Physique 6: 151157.
  • Pourbohloul B, Meyers LA, Skowronski DM, Krajden M, Patrick DM, Brunham RC. 2005. Modeling control strategies of respiratory pathogens. Emerging Infectious Diseases 11: 12491256.
  • Prospero S, Holdenrieder O, Rigling D. 2003a. Primary resource capture in two sympatric Armillaria species in managed Norway spruce forests. Mycological Research 107: 329338.
  • Prospero S, Rigling D, Holdenrieder O. 2003b. Population structure of Armillaria species in managed Norway spruce stands in the Alps. New Phytologist 158: 365373.
  • Proulx SR, Promislow DEL, Phillips PC. 2005. Network thinking in ecology and evolution. Trends in Ecology and Evolution 20: 345353.
  • Pysek P, Richardson DM, Williamson M. 2004. Predicting and explaining plant invasions through analysis of source area floras: some critical considerations. Diversity and Distributions 10: 179187.
  • Qin JL, Xu JJ, Hu DI, Sageman M, Chen HC. 2005. Analyzing terrorist networks: a case study of the Global Salafi Jihad network. Lecture Notes in Computer Science 3495: 287304.
  • Queloz V, Grünig CR, Sieber TN, Holdenrieder O. 2005. Monitoring the spatial and temporal dynamics of a community of the tree-root endophyte Phialocephala fortinii s.l. New Phytologist 168: 651660.
  • Read JM, Keeling MJ. 2003. Disease evolution on networks: the role of contact structure. Proceedings of the Royal Society of London B 270: 699708.
  • Reichard SH, White P. 2001. Horticulture as a pathway of invasive plant introductions in the US. Bioscience 51: 103113.
  • Rhodes M, Wardell-Johnson GW, Rhodes MP, Raymond B. 2006. Applying network analysis to the conservation of habitat trees in urban environments: a case study from Brisbane, Australia. Conservation Biology 20: 861870.
  • Richardson DM, Rejmanek M. 2004. Conifers as invasive aliens: a global survey and predictive framework. Diversity and Distributions 10: 321331.
  • Rizzo DM, Garbelotto M, Hansen EA. 2005. Phytophthora ramorum: integrative research and management of an emerging pathogen in California and Oregon forests. Annual Review of Phytopathology 43: 309335.
  • Roy M, Pascual M. 2006. On representing network heterogeneities in the incidence rate of simple epidemic models. Ecological Complexity 3: 8090.
  • Rozenfeld AF, Cohen R, Ben-Avraham D, Havlin S. 2002. Scale-free networks on lattices. Physical Review Letters 89, 218701: 14.
  • Russell CA, Smith DL, Waller LA, Childs JE, Real LA. 2004. A priori prediction of disease invasion dynamics in a novel environment. Proceedings of the Royal Society of London B 271: 2125.
  • Rvachev LA, Longini IM. 1985. A mathematical model for the global spread of influenza. Mathematical Biosciences 75: 323.
  • Sander LM, Warren CP, Sokolov IM. 2003. Epidemics, disorder, and percolation. Physica A 325: 18.
  • Sander LM, Warren CP, Sokolov IM, Simon C, Koopman J. 2002. Percolation on heterogeneous networks as a model for epidemics. Mathematical Biosciences 180: 293305.
  • Saramäki J, Kaski K. 2005. Modelling development of epidemics with dynamic small-world networks. Journal of Theoretical Biology 234: 413421.
  • Scherm H. 1996. On the velocity of epidemic waves in model plant disease epidemics. Ecological Modelling 87: 217222.
  • Schneeberger A, Mercer CH, Gregson SAJ, Ferguson NM, Nyamukapa CA, Anderson RM, Johnson AM, Garnett GP. 2004. Scale-free networks and sexually transmitted diseases – a description of observed patterns of sexual contacts in Britain and Zimbabwe. Sexually Transmitted Diseases 31: 380387.
  • Schwartz N, Cohen R, Ben-Avraham D, Barabási AL, Havlin S. 2002. Percolation in directed scale-free networks. Physical Review E 66, 015104: 14.
  • Seglen PO. 1992. The skewness of science. Journal of the American Society for Information Science 43: 628638.
  • Sen P, Dasgupta S, Chatterjee A, Sreeram PA, Mukherjee G, Manna SS. 2003. Small-world properties of the Indian railway network. Physical Review E 67, 036106: 15.
  • Serrano MA, Boguñá M. 2003. Topology of the world trade web. Physical Review E 68, 015101: 14.
  • Shaw MW. 1994. Modelling stochastic processes in plant pathology. Annual Review of Phytopathology 32: 523544.
  • Shaw MW. 1995. Simulation of population expansion and spatial pattern when individual dispersal distributions do not decline exponentially with distance. Proceedings of the Royal Society of London B 259: 243248.
  • Shaw MW, Harwood TD, Wilkinson MJ, Elliott L. 2006. Assembling spatially explicit landscape models of pollen and spore dispersal by wind for risk assessment. Proceedings of the Royal Society of London B 273: 17051713.
  • Shenhav B, Solomon A, Lancet D, Kafri R. 2005. Early systems biology and prebiotic networks. Lecture Notes in Computer Science 3380: 1427.
  • Shirley MDF, Rushton SP. 2005a. The impacts of network topology on disease spread. Ecological Complexity 2: 287299.
  • Shirley MDF, Rushton SP. 2005b. Where diseases and networks collide: lessons to be learnt from a study of the 2001 foot-and-mouth disease epidemic. Epidemiology and Infection 133: 10231032.
  • Simberloff D, Parker IM, Windle PN. 2005. Introduced species policy, management, and future research needs. Frontiers in Ecology and Environment 3: 1220.
  • Small M, Shi PL, Tse CK. 2004. Plausible models for propagation of the SARS virus. IEICE Transactions on Fundamentals of Electronics Communications and Computer Sciences E87A: 23792386.
  • Small M, Tse CK, Walker DM. 2006. Super-spreaders and the rate of transmission of the SARS virus. Physica D 215: 146158.
  • Smith DL, Waller LA, Russell CA, Childs JE, Real LA. 2005. Assessing the role of long-distance translocation and spatial heterogeneity in the raccoon rabies epidemic in Connecticut. Preventive Veterinary Medicine 71: 225240.
  • Soares MM, Corso G, Lucena LS. 2005. The network of syllables in Portuguese. Physica A 355: 678684.
  • Sornette D, Deschâtres F, Gilbert T, Ageon Y. 2004. Endogenous versus exogenous shocks in complex networks: an empirical test using book sale rankings. Physical Review Letters 93, 228701: 14.
  • Southworth D, He X-H, Swenson W, Bledsoe CS, Horwath WR. 2005. Application of network theory to potential mycorrhizal networks. Mycorrhiza 15: 589595.
  • Stanosz GR, Smith DR, Albers JS. 2005. Surveys for asymptomatic persistence of Sphaeropsis sapinea on or in stems of red pine seedlings from seven Great Lakes region nurseries. Forest Pathology 35: 233244.
  • Stepniewska-Jarosz S, Manka M, Asiegbu FO. 2006. Studies on anastomosis groups of Rhizoctonia solani isolates causing disease in two forest nurseries in Poland. Forest Pathology 36: 97109.
  • Stokstad E. 2004. Nurseries may have shipped sudden oak death pathogen nationwide. Science 303: 1959.
  • Strogatz SH. 2001. Exploring complex networks. Nature 410: 268276.
  • Stukenbrock EH, Banke S, McDonald BA. 2006. Global migration patterns in the fungal wheat pathogen Phaeosphaeria nodorum. Molecular Ecology 15: 28952904.
  • Sweetlove LJ, Fernie AR. 2005. Regulation of metabolic networks: understanding metabolic complexity in the systems biology era. New Phytologist 168: 923.
  • Szendrői B, Csányi G. 2004. Polynomial epidemics and clustering in contact networks. Proceedings of the Royal Society of London B 271: S364S366.
  • Takeuchi F, Yamamoto K. 2005. Effectiveness of vaccination strategies for infectious diseases according to human contact networks. Lecture Notes in Computer Science 3514: 956962.
  • Tatem AJ, Hay SI, Rogers DJ. 2006. Global traffic and disease vector dispersal. Proceedings of the National Academy of Sciences, USA 103: 62426247.
  • Trottier H, Philippe P. 2005. Scaling properties of childhood infectious diseases epidemics before and after mass vaccination in Canada. Journal of Theoretical Biology 235: 326337.
  • Tsonis AA, Roebber PJ. 2004. The architecture of the climate network. Physica A 333: 497504.
  • Uhrig JF. 2006. Protein interaction networks in plants. Planta 224: 771781.
  • Valverde S, Sole RV. 2005. Network motifs in computational graphs: a case study in software architecture. Physical Review E 72, 026107: 18.
  • Van den Bosch F, Metz JAJ, Zadoks JC. 1999. Pandemics of focal plant disease, a model. Phytopathology 89: 495505.
  • Vannucchi FS, Boccaletti S. 2004. Chaotic spreading of epidemics in complex networks of excitable units. Mathematical Biosciences and Engineering 1: 4955.
  • Vázquez A, Moreno Y. 2003. Resilience to damage of graphs with degree correlations. Physical Review E 67, 015101: 14.
  • Verdasca J, Da Gama MMT, Nunes A, Bernardino NR, Pacheco JM, Gomes MC. 2005. Recurrent epidemics in small world networks. Journal of Theoretical Biology 233: 553561.
  • Volchenkov D, Volchenkova L, Blanchard P. 2002. Epidemic spreading in a variety of scale free networks. Physical Review E 66, 046137: 19.
  • Vuorinen V, Peltomaki M, Rost M, Alava MJ. 2004. Networks in metapopulation dynamics. European Physical Journal B 38: 261268.
  • Wallinga J, Edmunds WJ, Kretzschmar M. 1999. Perspective: human contact patterns and the spread of airborne infectious diseases. Trends in Microbiology 7: 372377.
  • Watts DJ. 1999. Small worlds. The dynamics of networks between order and randomness. Princeton, NJ, USA: Princeton University Press.
  • Watts DJ, Muhamad R, Medina DC, Dodds PS. 2005. Multiscale, resurgent epidemics in a hierarchical metapopulation model. Proceedings of the National Academy of Sciences, USA 102: 1115711162.
  • Watts DJ, Strogatz SH. 1998. Collective dynamics of ‘small-world’ networks. Nature 393: 440442.
  • Webb CR. 2005. Farm animal networks: unraveling the contact structure of the British sheep population. Preventive Veterinary Medicine 68: 317.
  • Webb CR. 2006. Investigating the potential spread of infectious diseases of sheep via agricultural shows in Great Britain. Epidemiology and Infection 134: 3040.
  • Webber JF, Brasier CM. 2005. Invasive pathogens – from Dutch elm disease to sudden oak death. In: AlfordDV, BackhausGF, eds. Plant protection and plant health in Europe. Introduction and Spread of Invasive Species Symposium. Berlin, Germany: Humboldt University, 3542.
  • Woodward G, Ebenman B, Ernmerson M, Montoya JM, Olesen JM, Valido A, Warren PH. 2005. Body size in ecological networks. Trends in Ecology and Evolution 20: 402409.
  • Woolhouse MEJ. 2003. Foot-and-mouth disease in the UK: what should we do next time? Journal of Applied Microbiology 94: 126S130S.
  • Woolhouse MEJ, Shaw DJ, Matthews L, Liu WC, Mellor DJ, Thomas MR. 2005. Epidemiological implications of the contact network structure for cattle farms and the 20–80 rule. Biology Letters 1: 350352.
  • Wu ZX, Xi XJ, Wang YH. 2005. Properties of weighted structured scale-free networks. European Physical Journal B 45: 385390.
  • Xia YX, Tse CK, Tam WM, Lau FCM, Small M. 2005. Scale-free user-network approach to telephone network traffic analysis. Physical Review E 72, 026116: 17.
  • Yair Y, Aviv R, Ravid G, Yaniv R, Ziv B, Price C. 2006. Evidence for synchronicity of lightning activity in networks of spatially remote thunderstorms. Journal of Atmospheric and Solar Terrestrial Physics 68: 14011415.
  • Yan G, Zhou T, Wang J, Fu ZQ, Wang BH. 2005. Epidemic spread in weighted scale-free networks. Chinese Physics Letters 22: 510513.
  • Ying L, Yang L, Xiu-Ming S, Yong R, Jian J, Ben Q. 2005. Dynamic properties of epidemic spreading on finite size complex networks. Chinese Physics 14: 21532157.
  • Yook SH, Jeong H, Barabasi AL, Tu Y. 2001. Weighted evolving networks. Physical Review Letters 86: 58355838.
  • Zadoks JC, Van Den Bosch F. 1994. Expansion and spatial spread of disease. Annual Review of Phytopathology 32: 503522.
  • Zanette DH. 2002. Dynamics of rumor propagation on small-world networks. Physical Review E 65, 041908: 19.
  • Zanette DH, Kuperman M. 2002. Effects of immunization in small-world epidemics. Physica A 309: 445452.
  • Zedler JB, Kercher S. 2004. Causes and consequences of invasive plants in wetlands: opportunities, opportunists, and outcomes. Critical Review in Plant Sciences 23: 431452.
  • Zekri N, Clerc JP. 2001. Statistical and dynamical study of disease propagation in a small world network. Physical Review E 64, 056115: 16.
  • Zhao L, Park K, Lai YC. 2004. Attack vulnerability of scale-free networks due to cascading breakdown. Physical Review E 70, 035101: 14.
  • Zheng DF, Hui PM, Trimper S, Zheng B. 2005. Epidemics and dimensionality in hierarchical networks. Physica A 352: 659668.
  • Zlatic V, Bozicevic M, Stefancic H, Domazet M. 2006. Wikipedias: collaborative web-based encyclopedias as complex networks. Physical Review E 74, 016115: 19.