• Bridge PD, Roberts PJ, Spooner BM, Panchal G. 2004. On the unreliability of published DNA sequences. New Phytologist 161: 1517.
  • DeSantis TZ, Stone CE, Murray SR, Moberg JP, Andersen GL. 2005. Rapid quantification and taxonomic classification of environmental DNA from both prokaryotic and eukaryotic origins using a microarray. FEMS Microbiology Letters 245: 271278.
  • Gao HC, Yang ZMK, Gentry TJ, Wu LY, Schadt CW, Zhou JZ. 2007. Microarray-based analysis of microbial community RNAs by whole-community RNA amplification. Applied and Environmental Microbiology 73: 563571.
  • He ZL, Gentry TJ, Schadt CW, Wu LY, Liebich J, Chong SC, Huang ZJ, Wu WM, Gu BH, Jardine P et al . 2007. GeoChip: a comprehensive microarray for investigating biogeochemical, ecological and environmental processes. Isme Journal 1: 6777.
  • Koljalg U, Larsson KH, Abarenkov K, Nilsson RH, Alexander IJ, Eberhardt U, Erland S, Hoiland K, Kjoller R, Larsson E et al . 2005. UNITE: a database providing web-based methods for the molecular identification of ectomycorrhizal fungi. New Phytologist 166: 10631068.
  • Mashayekhi F, Ronaghi M. 2007. Analysis of read length limiting factors in pyrosequencing chemistry. Analytical Biochemistry 363: 275287.
  • Mitra RD, Church GM. 1999. In situ localized amplification and contact replication of many individual DNA Molecules. Nucleic Acids Research 27: e34.
  • Nilsson RH, Kristiansson E, Ryberg M, Larsson KH. 2005. Approaching the taxonomic affiliation of unidentified sequences in public databases – an example from the mycorrhizal fungi. BMC Bioinformatics 6: 178.
  • Nilsson RH, Larsson K-H, Ursing BM. 2004. galaxie – CGI scripts for sequence identification through automated phylogenetic analysis. Bioinformatics 20: 14471452.
  • Nilsson RH, Ryberg M, Kristiansson E, Abarenkov K, Larsson K-H, Koljalg U. 2006. Taxonomic reliability of DNA sequences in public sequence databases: a fungal perspective. Plos Biology 1: e59.
  • Ronaghi M, Karamohamed S, Pettersson B, Uhlen M, Nyren P. 1996. Real-time DNA sequencing using detection of pyrophosphate release. Analytical Biochemistry 242: 8489.
  • Ronaghi M, Uhlen M, Nyren P. 1998. A sequencing method based on real-time pyrophosphate. Science 281: 363365.
  • Valinsky L, Della Vedova G, Jiang T, Borneman J. 2002. Oligonucleotide fingerprinting of rRNA genes for analysis of fungal community composition. Applied and Environmental Microbiology 68: 59996004.
  • Wilson KH, Wilson WJ, Radosevich JL, DeSantis TZ, Viswanathan VS, Kuczmarski TA, Andersen GL. 2002. High-density microarray of small-subunit ribosomal DNA probes. Applied and Environmental Microbiology 68: 25352541.
  • Wu LY, Thompson DK, Li GS, Hurt RA, Tiedje JM, Zhou JZ. 2001. Development and evaluation of functional gene arrays for detection of selected genes in the environment. Applied and Environmental Microbiology 67: 57805790.