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Fig. S1 Mitogen-activated protein kinase (MAPK), MKK, MAPKKK and MAP4K expression during plant development.

Fig. S2 Regulation of mitogen-activated protein kinase (MAPK) signalling components during the cell cycle.

Fig. S3 Transcriptional regulation of mitogen-activated protein kinase (MAPK) signalling genes together with other signalling genes by infections of Phytophthora infestans (A) Botrytis cinerea (B), and treatments with PAMPs (C).

Fig. S4 Transcriptional regulation of mitogen-activated protein kinase (MAPK) signalling components together with other signalling genes during various abiotic stresses of shoots (A–H) and roots (I–Q).

Fig. S5 Transcriptional regulation of mitogen-activated protein kinase (MAPK) signalling components together with other signalling genes by hormone treatments, and treatments by various inhibitors.

Fig. S6 Hierarchical clustering of Pearson correlation coefficient values calculated from log-transformed expression values of gene pairs from 114 mitogen-activated protein kinase (MAPK) signalling genes and c. 22 500 Arabidopsis genes across c. 1730 experimental conditions.

Fig. S7 Hierarchical clustering of correlation coefficient values calculated for gene pairs from 114 mitogen-activated protein kinase (MAPK) signalling genes and 1620 transcription factor genes across 1730 experiments.

Table S1 List and description of microarray experiments used for analysis of gene expression in Figs 2 and 3 and Supplementary Material Figs S3 and S4 and Table S1

Table S2 Full list of gene ontology (GO) over-representation for biological process

Table S3 Full list of gene ontology (GO) over-representation for molecular function

Table S4 Full list of gene ontology (GO) over-representation for cellular component

Data S1 MAPK signalling gene expression values during development

Data S2 Expression values of mitogen-activated protein kinase (MAPK) signalling components, protein kinases, phosphatases and transcription factors during various biotic and abiotic stress treatments

Data S3 List of genes as top correlators with 114 mitogen-activated protein kinase (MAPK) signalling components with the corresponding correlation coefficient values

Please note: Blackwell Publishing are not responsible for the content or functionality of any supplementary materials supplied by the authors. Any queries (other than missing material) should be directed to the journal at New Phytologist Central Office

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