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  • Abramoff MD, Magelhaes PJ, Ram SJ. 2004. Image processing with ImageJ. Biophotonics International 11: 3642.
  • Alonso JM, Stepanova AN, Leisse TJ, Kim CJ, Chen H, Shinn P, Stevenson DK, Zimmerman J, Barajas P, Cheuk R et al . 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301: 653657.
  • Andersen B, Lundgren S, Dobritzsch D, Piškur J. 2008a. A recruited protease is involved in catabolism of pyrimidines. Journal of Molecular Biology 379: 243250.
  • Andersen G, Björnberg O, Polakova S, Pynyaha Y, Rasmussen A, Møller K, Hofer A, Moritz T, Sandrini MPB, Merico A-M et al . 2008b. A second pathway to degrade pyrimidine nucleic acid precursors in eukaryotes. Journal of Molecular Biology 380: 656666.
  • Ashihara H. 1981. Pattern of uracil metabolism during ageing of tobacco leaves. Acta Physiologiae Plantarum 3: 7784.
  • Bannai H, Tamada Y, Maruyama O, Nakai K, Miyano S. 2002. Extensive feature detection of N-terminal protein sorting signals. Bioinformatics 9: 298305.
  • Chen CT, Slocum RD. 2008. Expression and functional analysis of aspartate transcarbamoylase and role of de novo pyrimidine synthesis in regulation of growth and development in Arabidopsis. Plant Physiology and Biochemistry 46: 150159.
  • Clough SJ, Bent AF. 1998. Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant Journal 16: 735743.
  • Coxon KM, Chakauya E, Ottenhof HH, Whitney HM, Blundell TL, Abell C, Smith AG. 2005. Pantothenate biosynthesis in higher plants. Biochemical Society Transactions 33: 743746.
  • Duhazé C, Gagneu D, Leport L, Larher FR, Bouchereau A. 2003. Uracil as one of the multiple sources of β-alanine in Limonium latifolium, a halotolerant β-alanine betaine accumulating Plumbaginaceae. Plant Physiology and Biochemistry 41: 993998.
  • Emanuelsson O, Brunak S, Von Heijne G, Nielsen H. 2007. Locating proteins in the cell using TargetP, SignalP, and related tools. Nature Protocols 2: 953971.
  • Evans WR, Axelrod B. 1961. Pyrimidine metabolism in germinating seedlings. Plant Physiology 36: 913.
  • Gojkovic Z, Jahnke K, Schnackerz KD, Piskur J. 2000. PYD2 encodes 5,6-dihydropyrimidine amidohydrolase, which participates in a novel fungal catabolic pathway. Journal of Molecular Biology 295: 10731087.
  • Gojkovic Z, Rislund L, Andersen B, Sandrini MP, Cook PF, Schnackerz KD, Piskur J. 2003. Dihydropyrimidine amidohydrolases and dihydroorotases share the same origin and several enzymatic properties. Nucleic Acids Research 31: 16831692.
  • Gojkovic Z, Sandrini MPB, Piskur J. 2001. Eukaryotic β-alanine synthases are functionally related but have a high degree of structural diversity. Genetics 158: 9991011.
  • Haseloff J. 1998. Imaging green fluorescent protein in transgenic plants. In: RizzutoR, FasolatoC, eds. Imaging living cells. Berlin, Germany: Springer-Verlag , pp. 4094.
  • Hewitt MM, Carr JM, Williamson CL, Slocum RD. 2005. Effects of phosphate limitation on expression of genes involved in pyrimidine synthesis and salvaging in Arabidopsis. Plant Physiology and Biochemistry 43: 9199.
  • Hörtensteiner S, Feller U. 2002. Nitrogen metabolism and remobilization during senescence. Journal of Experimental Botany 53: 927937.
  • Islam MR, Kim H, Kang SW, Kim JS, Jeong YM, Hwang HJ, Lee SY, Woo JC, Kim SG. 2007. Functional characterization of a gene encoding a dual domain for uridine kinase and uracil phosphoribosyltransferase in Arabidopsis thaliana. Plant Molecular Biology 63: 465477.
  • Kao C-H, Hsu W-H. 2003. A gene cluster involved in pyrimidine reductive catabolism from Brevibacillus agri NCHU1002. Biochemical and Biophysical Research Communications 303: 848854.
  • Karimi M, Inze D, Depicke A. 2002. GATEWAY vectors for Agrobacterium-mediated plant transformation. Trends in Plant Sciences 7: 193195.
  • Katahira R, Ashihara H. 2006. Dual function of pyrimidine metabolism in potato (Solanum tuberosum) plants: pyrimidine salvage and supply of β-alanine to pantothenic acid synthesis. Physiologia Plantarum 127: 3843.
  • Klimyuk VI, Caroll BJ, Thomas CM, Jones JDG. 1993. Alkali treatment for rapid preparation of plant tissue for reliable PCR analysis. Plant Journal 3: 493494.
  • Lange PR, Geserick C, Tischendorf G, Zrenner R. 2008. Functions of chloroplastic adenylate kinases in Arabidopsis. Plant Physiology 146: 492504.
  • Lesley SM, Maretzki A, Nickell LG. 1980. Incorporation and degradation of 14C and 3H-labeled thymidine by sugarcane cells in suspension culture. Plant Physiology 65: 12241228.
  • Li G, Liu K, Baldwin SA, Wang D. 2003. Equilibrative nucleoside transporters of Arabidopsis thaliana: cDNA cloning, expression pattern and analysis of transport activities. Journal of Biological Chemistry 278: 35 73235 742.
  • Liepman AH, Olsen LJ. 2003. Alanine aminotransferase homologs catalyze the glutamate:glyoxylate aminotransferase reaction in peroxisomes of Arabidopsis. Plant Physiology 131: 215227.
  • Loh KD, Gyaneshwar P, Markenscoff Papadimitriou E, Fong R, Kim K-S, Parales R, Shou Z, Inwood W, Kustu S. 2006. A previously-undescribed pathway for pyrimidine catabolism. Proceedings of the National Academy of Sciences, USA 103: 51145119.
  • Marchler-Bauer A, Anderson JB, Derbyshire MK, DeWeese-Scott C, Gonzales NR, Gwadz M, Hao L, He S, Hurwitz DI, Jackson JD et al . 2007. CDD: a conserved domain database for interactive domain family analysis. Nucleic Acids Research 35: D237240.
  • Moffatt BA, Ashihara H. 2002. Purine and pyrimidine nucleotide synthesis and metabolism. In: SommervilleCR, MeyerowitzEM, eds. The Arabidopsis book. Rockville, MD, USA: American Society of Plant Biologists. doi: 10.1199/tab.0018, http://wwwaspborg/publications/arabidopsis/, pp. 120.
  • Murashige T, Skoog F. 1962. A revised medium for rapid growth and bioassays with tobacco tissue cultures. Physiologia Plantarum 15: 473497.
  • Piskur J, Schnackerz KD, Andersen G, Björnberg O. 2007. Comparative genomics reveals novel biochemical pathways. Trends in Genetics 8: 369372.
  • Rawls JM. 2006. Analysis of pyrimidine catabolism in Drosophila melanogaster using epistatic interactions with mutations of pyrimidine biosynthesis and beta-alanine metabolism. Genetics 172: 16651674.
  • Rosso MG, Li Y, Strizhov N, Reiss B, Dekker K, Weisshaar B. 2003. An Arabidopsis thaliana T-DNA mutagenized population (GABI-Kat) for flanking sequence tag-based reverse genetics. Plant Molecular Biology 53: 247259.
  • Sasamoto H, Saito K, Ashihara H. 1987. Metabolism of pyrimidines in protoplasts from cultured Catharanthus roseus cells. Annals of Botany 60: 417420.
  • Scheible WR, Morcuende R, Czechowski T, Fritz C, Osuna D, Palacios-Rojas N, Schindelasch D, Thimm O, Udvardi MK, Stitt M. 2004. Genome-wide reprogramming of primary and secondary metabolism, protein synthesis, cellular growth processes, and the regulatory infrastructure of Arabidopsis in response to nitrogen. Plant Physiology 136: 24832499.
  • Schmid M, Davison TS, Henz SR, Pape UJ, Demar M, Vingron M, Schölkopf B, Weigel D, Lohmann JU. 2005. A gene expression map of Arabidopsis thaliana development. Nature Genetics 37: 501506.
  • Schmidt A, Su Y-H, Kunze R, Warner S, Hewitt M, Slocum RD, Ludewig U, Frommer WB, Desimone M. 2004. UPS1 and UPS2 from Arabidopsis mediate high affinity transport of uracil and 5-fluorouracil. Journal of Biological Chemistry 279: 44 81744 824.
  • Schnackerz KD, Dobritzsch D, Lindqvist Y, Cook PF. 2004. Dihydropyrimidine dehydrogenase: a flavoprotein with four iron–sulfur clusters. Biochimica et Biophysica Acta 1701: 6174.
  • Schröder M, Giermann N, Zrenner R. 2005. Functional analysis of the pyrimidine de novo synthesis pathway in Solanaceous species. Plant Physiology 138: 19261938.
  • Shannon JC, Pien FM, Liu KC. 1996. Nucleotide and nucleotide sugars in developing maize endosperm. Plant Physiology 110: 835843.
  • Slocum RD. 2005. Genes, enzymes and regulation of arginine biosynthesis in plants. Plant Physiology and Biochemistry 43: 729745.
  • Small I, Peeters N, Legeai F, Lurin C. 2004. Predotar: A tool for rapidly screening proteomes for N-terminal targeting sequences. Proteomics 4: 15811590.
  • Soong C-L, Ogawa J, Sakuradani E, Shimizu S. 2002. Barbiturase, a novel zinc-containing amidohydrolase involved in oxidative pyrimidine metabolism. Journal of Biological Chemistry 277: 70517058.
  • Stasolla C, Katahira R, Thorpe TA, Ashihara H. 2003. Purine and pyrimidine nucleotide metabolism in higher plants. Journal of Plant Physiology 160: 12711295.
  • Terano S, Suzuki Y. 1978. Formation of β-alanine from spermine and spermidine in maize shoots. Phytochemistry 17: 148149.
  • The UniProt Consortium. 2007. The Universal Protein Resource (UniProt). Nucleic Acids Research 35: D193197.
  • Tintemann H, Wasternack C, Benndorf R, Reinbothe H. 1985. The rate-limiting step of uracil degradation in tomato cell suspension cultures and Euglena gracilis: in vivo studies. Comparative Biochemistry and Physiology 82B: 787792.
  • Tintemann H, Wasternack C, Helbing D, Glund K, Hause B. 1987. Pyrimidine degradation in tomato cell suspension cultures and in Euglena gracilis – localization of enzymes. Comparative Biochemistry and Physiology 88B: 943948.
  • Traut TW, Jones ME. 1996. Uracil metabolism – UMP synthesis from orotic acid or uridine and conversion of uracil to b-alanine: enzymes and cDNAs. Progress in Nucleic Acid Research and Molecular Biology 53: 178.
  • Tsai CS, Axelrod B. 1965. Catabolism of pyrimidines in rape seedlings. Plant Physiology 40: 3944.
  • Ullrich A, Knecht W, Piskur J, Löffler M. 2002. Plant dihydroorotate dehydrogenase differs significantly in substrate specificity and inhibition from the animal enzymes. FEBS Letters 529: 346350.
  • Walsh TA, Green SB, Larrinua IM, Schmitzer PR. 2001. Characterization of plant β-ureidopropionase and functional overexpression in Escherichia coli. Plant Physiology 125: 10011011.
  • Wasternack C. 1978. Degradation of pyrimidines-enzymes, localization and role in metabolism. Biochemie und Physiologie der Pflanzen 173: 467499.
  • Wasternack C. 1982. Metabolism of pyrimidines and purines. In PirsonA, ZimmermannMH, eds. Encyclopedia of plant physiology. New Ser, Vol. 14B. Berlin, Germany: Springer, 263301.
  • Wittwer CT, Ririe KM, Andrew RV, David DA, Gundry RA, Balis UJ. 1997. The LightCycler: a microvolume multisample fluorimeter with rapid temperature control. BioTechniques 22: 176181.
  • Yokota H, Fernandez-Salguero P, Furuya H, Lin K, McBride OW, Podschun B, Schnackerz KD, Gonzalez FJ. 1994. cDNA cloning and chromosome mapping of human dihydropyrimidine dehydrogenase, an enzyme associated with 5-fluorouracil toxicity and congenital thymine uraciluria. Journal of Biological Chemistry 269: 23 19223 196.
  • Zrenner R, Stitt M, Sonnewald U, Boldt R. 2006. Pyrimidine and purine biosynthesis and degradation in plants. Annual Review of Plant Biology 57: 805836.