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  • Arrieta-Espinoza G, Sánchez E, Vargas S, Lobo J, Quesada T, Espinoza AM. 2005. The weedy rice complex in Costa Rica. I. Morphological study of relationships between commercial rice varieties, wild Oryza relatives and weedy types. Genetic Resources and Crop Evolution 52: 575587.
  • Caicedo A, Williamson S, Hernandez RD, Boyko A, Fledel-Alon A, York T, Polato N, Olsen K, Nielsen R, McCouch SR et al . 2007. Genome-wide patterns of nucleotide polymorphism in domesticated rice. PLoS Genetics 3: e163.
  • Campbell LG, Snow AA, Ridley CE. 2006. Weed evolution after crop gene introgression: greater survival and fecundity of hybrids in a new environment. Ecology Letters 9: 11981209.
  • Chen LJ, Lee DS, Song ZP, Suh HS, Lu B-R. 2004. Gene flow from cultivated rice (Oryza sativa) to its weedy and wild relatives. Annals of Botany 93: 6773.
  • Childs N, Burdett A. 2000. Rice situation and outlook: the U.S. rice export market. Economic Research Service/USDA November 2000: 4854.
  • Diarra A, Smith RJ Jr, Talbert RE. 1985. Growth and morphological characteristics of red rice (Oryza sativa) biotypes. Weed Science 33: 310314.
  • Ellstrand NC. 2003. Dangerous liaisons? When cultivated plants mate with their wild relatives. Baltimore, MA, USA: Johns Hopkins University Press.
  • Ellstrand NC, Prentice HC, Hancock JF. 1999. Gene flow and introgression from domesticated plants into their wild relatives. Annual Review of Ecology and Systematics 30: 539563.
  • Felsenstein J. 1993. PHYLIP (Phylogeny Inference Package) version 3.5c. Department of Genetics, University of Washington, Seattle, WA, USA: Distributed by the author.
  • Garris AJ, Tai TH, Coburn J, Kresovich S, McCouch S. 2005. Genetic structure and diversity in Oryza sativa L. Genetics 169: 16311638.
  • Gealy DR, Mitten DH, Rutger JN. 2003. Gene flow between red rice (Oryza sativa) and herbicide-resistant rice (O. sativa): implications for weed management. Weed Technology 17: 627645.
  • Gealy DR, Tai TH, Sneller CH. 2002. Identification of red rice, rice, and hybrid populations using microsatellite markers. Weed Science 50: 333339.
  • Gu X-Y, Kianian SF, Foley ME. 2005. Seed dormancy imposed by covering tissues interrelates to shattering and seed morphological characteristics in weedy rice. Crop Science 45: 948955.
  • Langevin SA, Clay K, Grace JB. 1990. The incidence and effects of hybridization between cultivated rice and its related weed red rice (Oryza sativa L.). Evolution 44: 10001008.
  • Li L, Steffens J. 2002. Overexpression of polyphenol oxidase in transgenic tomato plants results in enhanced bacterial disease resistance. Planta 215: 239247.
  • Londo JP, Chiang Y-C, Hung K-H, Chiang T-Y, Schaal BA. 2006. Phylogeography of Asian wild rice, Oryza rufipogon, reveals multiple independent domestication of cultivated rice Oryza sativa. Proceedings of the National Academy of Sciences, USA 103: 95789583.
  • Londo JP, Schaal BA. 2007. Origins and population genetics of weedy red rice in the USA. Molecular Ecology 16: 45234535.
  • Lu B-R, Snow AA. 2005. Gene flow from genetically modified rice and its environmental consequences. BioScience 55: 669678.
  • Lu H, Redus MA, Coburn JR, Rutger JN, McCouch SR, Tai TH. 2005. Population structure and breeding patterns of 145 U.S. rice cultivars based on SSR marker analysis. Crop Science 45: 6676.
  • Mackill DJ, McKenzie KS. 2003. Origin and characteristics of U.S. rice cultivars. In: SmithCW, ed. Rice: origin, history, technology, and production. Hoboken, NJ, USA: John Wiley & Sons, Inc., 87100.
  • Messeguer J, Marfà V, Català MM, Guiderdoni E, Melé E. 2004. A field study of pollen-mediated gene flow from Mediterranean GM rice to conventional rice and the red rice weed. Molecular Breeding 13: 103112.
  • Morishima H, Sano Y, Oka H-I. 1992. Evolutionary studies in cultivated rice and its wild relatives. In: FutuymaDJ, AntonovicsJ, eds. Oxford surveys in evolutionary biology: Volume 8. Oxford, UK: Oxford University Press, 135184.
  • Morrell PL, Williams-Coplin TD, Lattu AL, Bowers JE, Chandler JM, Paterson AH. 2005. Crop-to-weed introgression has impacted allelic composition of johnsongrass populations with and without recent exposure to cultivated sorghum. Molecular Ecology 14: 21432154.
  • Nei M. 1982. Evolution of human races at the gene level. In: Bonne-TamirB, CohenT, GoodmanRM, eds. Human genetics, part A: The unfolding genome. New York, NY, USA: Alan R Liss Press, 167181.
  • Noldin JA, Chandler JM, McCauley GN. 1999. Red rice (Oryza sativa) biology. I. Characterization of red rice ecotypes. Weed Technology 13: 1218.
  • Oka H-I. 1953. Phylogenetic differentiation of the cultivated rice plant. 1. Variations in respective characteristics and their combinations in rice cultivars. Japanese Journal of Breeding 3: 3343.
  • Oka H-I. 1958. Intervarietal variation and classification of cultivated rice. Indian Journal of Genetics & Plant Breeding 18: 7989.
  • Oka H-I, Chang W-T. 1961. Hybrid swarms between wild and cultivated rice species, Oryza perennis and O. sativa. Evolution 15: 418430.
  • Rozas J, Sanchez-DelBarrio JC, Messeguer X, Rozas R. 2003. DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19: 24962497.
  • Saitou N, Nei M. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution 4: 406426.
  • Shivrain VK, Burgos NR, Anders MM, Rajguru SN, Moore J, Sales MA. 2007. Gene flow between Clearfield(tm) rice and red rice. Crop Protection 26: 349356.
  • Smith RJ Jr. 1988. Weed thresholds in Southern U.S. rice, Oryza sativa. Weed Technology 2: 232241.
  • Suh HS, Sato YI, Morishima H. 1997. Genetic characterization of weedy rice (Oryza sativa L.) based on morpho-physiology, isozymes and RAPD markers. Theoretical and Applied Genetics 94: 316321.
  • Sweeney MT, Thomson MJ, Cho YG, Park YJ, Williamson SH, Bustamante CD, McCouch SR. 2007. Global dissemination of a single mutation conferring white pericarp in rice. PLoS Genetics 3: e133.
  • Sweeney MT, Thomson MJ, Pfeil BE, McCouch S. 2006. Caught red-handed: Rc encodes a basic helix–loop–helix protein conditioning red pericarp in rice. Plant Cell 18: 283294.
  • Tajima F. 1989. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123: 585595.
  • Thipyapong P, Hunt MD, Steffens JC. 1995. Systemic wound induction of potato (Solanum tuberosum) polyphenol oxidase. Phytochemistry 40: 673676.
  • Vaughan LK, Ottis BV, Prazak-Havey AM, Bormans CA, Sneller C, Chandler JM, Park WD. 2001. Is all red rice found in commercial rice really Oryza sativa? Weed Science 49: 468476.
  • Warwick SI, Legere A, Simard MJ, James T. 2008. Do escaped transgenes persist in nature? The case of an herbicide resistance transgene in a weedy Brassica rapa population. Molecular Ecology 17: 13871395.
  • Whitton J, Wolf DE, Arias DM, Snow AA, Rieseberg LH. 1997. The persistence of cultivar alleles in wild populations of sunflowers five generations after hybridization. Theoretical and Applied Genetics 95: 3340.
  • Yu Y, Tang T, Qian Q, Wang Y, Yan M, Zeng D, Han B, Wu C-I, Shi S, Li J. 2008. Independent losses of function in a polyphenol oxidase in rice: differentiation in grain discoloration between subspecies and the role of positive selection under domestication. Plant Cell 20: 29462959.