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References

  • Ahrens RJ, Bockheim JG, Ping C. 2004. The Gelisol order in soil taxonomy. In: KimbleJ, ed. Cryosols: permafrost-affected soils. New York, NY, USA: Springer-Verlag, 210.
  • Arnold AE, Lutzoni F. 2007. Diversity and host range of foliar fungal endophytes: are tropical leaves biodiversity hotspots? Ecology 88: 541549.
  • Bigg WL. 2000. Fungal succession and diversity in ectomycorrhizal associations: a case study approach. Albany, CA, USA: USDA Forest Service General Technical Report 2000. PSW-GTR-178.
  • Bonan GB, Shugart HH. 1989. Environmental factors and ecological processes in boreal forests. Annual Review of Ecology and Systematics 20: 128.
  • Bradshaw CJA, Warkentin IG, Sodhi NS. 2009. Urgent preservation of boreal carbon stocks and biodiversity. Trends in Ecology and Evolution 24: 541548.
  • Brunner I, Brunner F, Laursen GA. 1992. Characterization and comparison of macrofungal communities in Alnus tenuifolia and A. crispa forests in Alaska. Canadian Journal of Botany 70: 12471258.
  • Buée M, Reich M, Murat C, Morin E, Nilsson RH, Uroz S, Martin F. 2009. 454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity. New Phytologist 184: 449456.
  • Calef MP, McGuire AD, Epstein HE, Rupp TS, Shugart HH. 2005. Analysis of vegetation distribution in Interior Alaska and sensitivity to climate change using a logistic regression approach. Journal of Biogeography 32: 863878.
  • Callaghan TV, Björn LO, Chernov Y, Chapin FS III, Christensen TR, Huntley B, Ims RA, Jolly D, Johansson M, Jonasson S et al. 2004. Biodiversity, distributions and adaptations of arctic species in the context of environmental change. Ambio 33: 404417.
  • Camill P. 1999. Patterns of boreal permafrost peatland vegetation across environmental gradients sensitive to climate warming. Canadian Journal of Botany 77: 721733.
  • Chapin FS III, McGuire AD, Ruess RW, Walker MW, Boone R, Edwards M, Finney B, Hinzman LD, Jones JB, Juday GB et al. 2006. Summary and synthesis: past and future changes in the Alaskan boreal forest. In: ChapinFSIII, OswoodM, Van CleveK, ViereckLA, VerbylaDL, eds. Alaska’s changing boreal forest. New York, NY, USA: Oxford University Press, 332338.
  • Dahlberg A. 2002. Effects of fire on ectomycorrhizal fungi in Fennoscandian boreal forests. Silva Fennica 36: 6980.
  • Dighton J, Mason PA. 1985. Mycorrhizal dynamics during forest tree development. In: MooreD, CasseltonLA, WoodsDA, FranklandJC, eds. Developmental biology of higher fungi – British Mycological Society Symposium 10. New York, NY, USA: Cambridge University Press, 117139.
  • Donoghue MJ, Yahara T, Conti E, Cracraft J, Crandall KA, Faith DP, Häuser C, Hendry AP, Joly C, Kogure K et al. 2009. bioGENESIS: providing an evolutionary framework for biodiversity science. Report No.6, bioGENESIS Science Plan and Implementation Strategy, DIVERSITAS, UNESCO.
  • Edgar RC. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research 32: 17921797.
  • Elvebakk A. 2005. ‘Arctic hotspot complexes’– proposed priority sites for studying and monitoring effects of climatic change on arctic biodiversity. Phytocoenologia 35: 10671079.
  • Engelmark O. 1999. Boreal forest disturbances. In: WalkerLR, ed. Ecosystems of the 16 – Ecosystems of disturbed grounds. Amsterdam, the Netherlands: Elsevier, 161186.
  • Essen PA, Ehnström B, Ericson L, Sjöberg K. 1992. Boreal forests. Ecological Bulletin 46: 1647.
  • Frolking S, Goulden ML, Wofsy SC, Fan SM, Sutton DJ, Munger JW, Bazzaz AM, Daube BC, Crill PM, Aber JD et al. 1996. Temporal variability in the carbon balance of a spruce/moss boreal forest. Global Change Biology 2: 343366.
  • Gardes M, Bruns TD. 1993. ITS primers with enhanced specificity of basidiomycetes: application to the identification of mycorrhizae and rusts. Molecular Ecology 2: 113118.
  • Geml J, Laursen GA, O’Neill K, Nusbaum HC, Taylor DL. 2006. Beringian origins and cryptic speciation events in the fly agaric (Amanita muscaria). Molecular Ecology 15: 225239.
  • Geml J, Laursen GA, Taylor DL. 2008. Molecular phylogenetic diversity assessment of arctic and boreal Agaricus taxa. Mycologia 100: 577589.
  • Geml J, Laursen GA, Timling I, McFarland JM, Booth MG, Lennon N, Nusbaum HC, Taylor DL. 2009. Molecular phylogenetic biodiversity assessment of arctic and boreal Lactarius Pers. (Russulales; Basidiomycota) in Alaska, based on soil and sporocarp DNA. Molecular Ecology 18: 22132227.
  • Higgins KL, Arnold AE, Miadlikowska J, Sarvate SD, Lutzoni F. 2007. Phylogenetic relationships, host affinity, and geographic structure of boreal and arctic endophytes from three major plant lineages. Molecular Phylogenetics and Evolution 42: 543555.
  • Hinzman L, Bettez N, Bolton WR, Chapin FS III, Dyugerov M, Fastie C, Griffith B, Hollister RD, Hope A, Huntington HP et al. 2005. Evidence and implications of recent climatic change in northern Alaska and other arctic regions. Climatic Change 72: 251298.
  • Hollingsworth TN, Walker MD, Chapin FS III, Parsons A. 2006. Scale-dependent environmental controls over species composition in Alaskan black spruce communities. Canadian Journal of Forest Research 36: 17811796.
  • Huang X, Madan A. 1999. CAP3: A DNA sequence assembly program. Genome Research 9: 868877.
  • Huelsenbeck JP, Ronquist F. 2001. MRBAYES: Bayesian inference of phylogeny. Bioinformatics 17: 754755.
  • Kirk PM, Cannon PF, David JC, Stalpers JA. 2001. Dictionary of the fungi, 9th edn. Wallingford, UK: CAB International.
  • Kunin V, Engelbrektson A, Ochman H, Hugenholtz P 2009. Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates. Environmental Microbiology 12: 118123.
  • Lodge J, Ammirati JF, O'Dell TO, Mueller GM, Huhndorf SM, Wang CJ, Stokland JN, Schmit JP, Ryrarden L, Leacock PR, et al . 2004. Terrestrial and lignicolous macrofungi. In: MuellerGM, BillsGF, FosterMS, eds. Biodiversity of Fungi – Inventory and monitoring methods. Elsevier Academic Press, 127172.
  • Lynch MDJ, Thorn RG. 2006. Diversity of Basidiomycetes in Michigan agricultural soils. Applied and Environmental Microbiology 72: 70507056.
  • McCune B, Grace JB. 2002. Analysis of ecological communities. Gleneden Beach, OR, USA: MjM Software.
  • McGuire AD, Clein JS, Melillo JM, Kicklighter DW, Meier RA, Vorosmarty CJ, Serreze MC. 2000. Modeling carbon responses on tundra ecosystems to historical and projected climate: sensitivity of pan-arctic carbon storage to temporal and spatial variation in climate. Global Change Biology 6(Suppl. 1): 141159.
  • McGuire AD, Melillo JM, Kicklighter DW, Joyce LA. 1995. Equilibrium responses of soil carbon to climate change: empirical and process-based estimates. Journal of Biogeography 22: 785796.
  • Miller OK. 1982. Higher fungi in Alaskan subarctic tundra and taiga plant communities. In: LaursenGA, AmmiratiJF, eds. Arctic and alpine mycology. The First International Symposium on Arcto-Alpine Mycology. Seattle, WA, USA: University of Washington Press, 123149.
  • Miller SL, Larsson E, Larsson KH, Verbeken A, Nuytinck J. 2006. Perspectives in the new Russulales. Mycologia 98: 96970.
  • Molina R, Massicotte H, Trappe JM. 1992. Specificity phenomena in mycorrhizal symbioses: community-ecological consequences and practical implications. In: RoutledgeAMF, ed. Mycorrhizal functioning: an integrative plant–fungal process. New York, NY, USA: Chapman & Hall, 357423.
  • Nowacki G, Spencer P, Fleming M, Brock T, Jorgenson T 2001. Ecoregions of Alaska. Reston, VA, USA: U.S. Geological Survey Open-File Report 02-297 (map).
  • O’Brien H, Parrent JL, Jackson JA, Moncalvo JM, Vilgalys R. 2005. Fungal community analysis by large-scale sequencing of environmental samples. Applied and Environmental Microbiology 71: 55445550.
  • Osterkamp TE, Romanovsky VE. 1999. Evidence for warming and thawing of discontinuous permafrost in Alaska. Permafrost and Periglacial Processes 10: 1737.
  • Pearson WR, Lipman DJ. 1988. Improved tools for biological sequence analysis. Proceedings of the National Academy of Sciences, USA 85: 24442448.
  • Porter TM, Skillman JE, Moncalvo JM. 2008. Fruiting body and soil rDNA sampling detects complementary assemblage of Agaricomycotina (Basidiomycota, Fungi) in a hemlock-dominated forest plot in southern Ontario. Molecular Ecology 17: 30373050.
  • Posada D, Crandall KA. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics 14: 817818.
  • Schadt CW, Martin AP, Lipson DA, Schmidt SK. 2003. Seasonal dynamics of previously unknown fungal lineages in tundra soils. Science 301: 13591361.
  • Slaughter CW, Benson CS. 1986. Seasonal snow and aufeis in Alaska’s taiga. In: KaneLD, ed. Proceedings: Cold Regions Hydrology. Bethesda, MD, USA: American Water Resources Association, 101109.
  • Smith SE, Read DJ. 1997. Mycorrhizal symbiosis, 2nd edn. London, UK: Academic Press.
  • Smith TM, Shugart HH. 1993. The transient response of terrestrial carbon storage to a perturbed climate. Nature 361: 523526.
  • Swofford DL. 2002. PAUP*. Phylogenetic Analysis Using Parsimony (*and other methods), 4.0b4a. Sunderland, MA, USA: Sinauer Associates.
  • Taylor DL, Booth MG, McFarland JW, Herriott IC, Lennon NJ, Nusbaum C, Marr TG. 2008. Increasing ecological inference from high throughput sequencing of fungi in the environment through a tagging approach. Molecular Ecology Resources 8: 742752.
  • Taylor DL, Bruns TD. 1999. Community structure of ectomycorrhizal fungi in a Pinus muricata forest: minimal overlap between the mature forest and resistant propagule communities. Molecular Ecology 8: 18371850.
  • Taylor DL, Herriott IC, Long J, O’Neill K. 2007. TOPO-TA is A-OK: a test of phylogenetic bias in fungal environmental clone library construction. Environmental Microbiology 9: 13291334.
  • Taylor DL, Herriott IC, Stone KE, McFarland JW, Booth MG, Leigh MB 2010. Resilience and vulnerability of fungal communities in Alaskan boreal forest soils. Canadian Journal of Forest Research, in press.
  • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. 1997. The CLUSTAL X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research 25: 48764882.
  • Usher MB, Callaghan TV, Gilchrist G, Heal B, Juday GP, Loeng H, Muir MAK, Prestrud P. 2005. Principles of conserving the Arctic’s biodiversity. In: Arctic climate impact assessment. London, UK: Cambridge University Press, 539596.
  • Viereck LA, Dyrness CT, Batten AR, Wenzlick KJ. 1992. Alaska vegetation classification. Portland, OR, USA: USDA Forest Service General Technical Report PNW-GTR-286.
  • Zwickl DJ 2006. Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion, Ph.D. thesis. The University of Texas at Austin, Austin, TX, USA.