SEARCH

SEARCH BY CITATION

References

  • Arrigo N, Tuszynski JW, Ehrich D, Gerdes T, Alvarez N. 2009. Evaluating the impact of scoring parameters on the structure of intra-specific genetic variation using RawGeno, an R package for automating AFLP scoring. BMC Bioinformatics 10: 33.
  • Badaeva ED, Amosova AV, Samatadze TE, Zoshchuck SA, Shostak NG, Chikida NN, Zelenin AV, Raupp WJ, Frijters A, Gill BS. 2004. Genome differentiation in Aegilops. iv. Evolution of the U-genome cluster. Plant Systematics and Evolution 246: 4576.
  • Balfourier F, Imbert C, Charmet G. 2000. Evidence for phylogeographic structure in Lolium species related to the spread of agriculture in Europe. A cpDNA study. Theoretical and Applied Genetics 101: 131138.
  • Ballouche A. 2003. La dimension anthropique de l’histoire de la végétation Holocène au Maghreb. In: Le peuplement ancien de l’Algérie: sa place dans le contexte Méditerranéen. Paris, France: Collège de France.
  • Beja-Pereira A, Caramelli D, Lalueza-Fox C, Vernesi C, Ferrand N, Casoli A, Goyache F, Royo LJ, Conti S, Lari M et al. 2006. The origin of European cattle: evidence from modern and ancient DNA. Proceedings of the National Academy of Sciences, USA 103: 81138118.
  • Besnard G, De Casas RR, Vargas P. 2007. Plastid and nuclear DNA polymorphism reveals historical processes of isolation and reticulation in the olive tree complex (Olea europaea). Journal of Biogeography 34: 736752.
  • Bittkau C, Comes HP. 2005. Evolutionary processes in a continental island system: molecular phylogeography of the Aegean Nigella arvensis alliance (Ranunculaceae) inferred from chloroplast DNA. Molecular Ecology 14: 40654083.
  • Blondel J. 2006. The ‘Design’ of Mediterranean landscapes: a millennial story of humans and ecological systems during the historic period. Human Ecology 34: 713729.
  • Bonin A, Bellemain E, Bronken Edeisen P, Pompanon F, Brochmann C, Taberlet P. 2004. How to track and assess genotyping errors in population genetics studies. Molecular Ecology 13: 32613273.
  • Borchsenius F. 2009. FastGap 1.2. Denmark: Department of Biological Sciences, University of Aarhus, Aarhus, Denmark. http://192.38.46.42/aubot/fb/FastGap_home.htm .
  • Burnier J, Buerki S, Arrigo N, Küpfer P, Alvarez N. 2009. Genetic structure and evolution of Alpine polyploid complexes: Ranunculus kuepferi (Ranunculaceae) as a case study. Molecular Ecology 18: 37303744.
  • Bussel JD. 1999. The distribution of random amplified polymorphic DNA (RAPD) diversity amongst populations of Isotama petraea (Lobeliaceae). Molecular Ecology 8: 775789.
  • Caldwell KH, Dvorak J, Lagudah ES, Akhunov E, Luo MC, Wolters P, Powell W. 2004. Sequence polymorphism in polyploid wheat and their D-genome diploid ancestor. Genetics 167: 941947.
  • Chee PW, Lavin M, Talbert LE. 1995. Molecular analysis of evolutionary patterns in U genome wild wheats. Genome 38: 290297.
  • Chen DH, Ronald PC. 1999. A rapid DNA minipreparation method suitable for AFLP and other PCR applications. Plant Molecular Biology Reporter 17: 5357.
  • Chennaveeraiah MS. 1960. Some aspects of the cytotaxonomy of Aegilops. Proceedings Summer School of Botany 4350.
  • Clement M, Posada D, Crandall K. 2000. TCS: a computer program to estimate gene genealogies. Molecular Ecology 9: 16571660.
  • Comes HP, Abbott RJ. 2001. Molecular phylogeography, reticulation, and lineage sorting in Mediterranean Senecio sect. Senecio (Asteraceae). Evolution 55: 19431962.
  • Costich DE, Meagher TR. 1992. Genetic variation in Ecballium elaterium (Cucurbitaceae): breeding system and geographic distribution. Journal of Evolutionary Biology 5: 589601.
  • Currat M, Ruedi M, Petit RJ, Excoffier L. 2008. The hidden side of invasions: massive introgression by local genes. Evolution 62: 19081920.
  • Evanno G, Regnaut S, Goudet J. 2005. Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Molecular Ecology 14: 26112620.
  • Falush D, Stephens M, Pritchard JK. 2007. Inference of population structure using multilocus genotype data: dominant markers and null alleles. Molecular Ecology Notes 7: 574578.
  • Fineschi S, Taurchini D, Villani F, Vendramin GG. 2000. Chloroplast DNA polymorphism reveals little geographical structure in Castanea sativa Mill. (Fagaceae) throughout Southern European countries. Molecular Ecology 9: 14951503.
  • Fjellheim S, Rognli OA, Fosnes K, Brochmann C. 2006. Phylogeographical history of the widespread meadow fescue (Festuca pratensis Huds.) inferred from chloroplast DNA sequences. Journal of Biogeography 33: 14701478.
  • Friebe BR, Tuleen NA, Gill BS. 1999. Development and identification of a complete set of Triticum aestivum–Aegilops geniculata chromosome addition lines. Genome 42: 374380.
  • Furuta Y. 1981. Chromosome structural variation in Aegilops ovata L. Japanese Journal of Genetics 56: 287294.
  • Gugerli F, Englisch T, Niklfeld H, Tribsch A, Mirek Z, Ronikier M, Zimmermann NE, Holderegger R, Taberlet P. 2008. Relationships among levels of biodiversity and the relevance of intraspecific diversity in conservation – a project synopsis. Perspectives in Plant Ecology, Evolution and Systematics 10: 259281.
  • Hall TA. 1999. Bioedit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/nt. Nucleic Acids Symposium Series 41: 9598.
  • Hammer K. 1980. Vorarbeiten zur monographischen Darstellung von Wildpflanzensortimenten: Aegilops L. Kulturpflanze 28: 33180.
  • Hampe A, Petit RJ. 2005. Conserving biodiversity under climate change: the rear edge matters. Ecology Letters 8: 461467.
  • Hartigan JA, Wong MA. 1979. A K-means clustering algorithm. Applied Statistics 28: 100108.
  • Hewitt GM. 2000. The genetic legacy of the Quaternary ice ages. Nature 405: 907913.
  • Hewitt GM. 2004. Genetic consequences of climatic oscillations in the Quaternary. Philosophical Transactions of the Royal Society of London Series B-Biological Sciences 359: 183195.
  • Jakob SS, Ihlow A, Blattner FR. 2007. Combined ecological niche modelling and molecular phylogeography revealed the evolutionary history of Hordeum marinum (Poaceae) – niche differentiation, loss of genetic diversity, and speciation in Mediterranean Quaternary refugia. Molecular Ecology 16: 17131727.
  • Kadosumi S, Kawahara T, Sasanuma T. 2005. Multiple origins of U genome in two UM genome tetraploid Aegilops species, Ae. columnaris and Ae. triaristata, revealed based on the polymorphism of a genome-specific PCR fragment. Genes & Genetic Systems 80: 105111.
  • Kluge AG. 1989. A concern for evidence and a phylogenetic hypothesis of relationships among Epicrates (Boidae, Serpentes). Systematic Zoology 38: 725.
  • Kuper R, Kroepelin S. 2006. Climate-controlled Holocene occupation in the Sahara: motor of Africa’s evolution. Science 313: 803807.
  • Legendre P, Legendre L. 1998. Numerical ecology. Amsterdam, the Netherlands: Elsevier.
  • Médail F, Diadema K. 2009. Glacial refugia influence plant diversity patterns in the Mediterranean basin. Journal of Biogeography 36: 13331345.
  • Meimberg H, Rice KJ, Milan NF, Njoku CC, Mckay JK. 2009. Multiple origins promote the ecological amplitude of allopolyploid Aegilops (Poaceae). American Journal of Botany 96: 12621273.
  • Moscati S. 2001. The Phoenicians. London, UK & New York, NY, USA: I.B. Tauris & Co Ltd.
  • Murai K, Tsunewaki K. 1986. Molecular-basis of genetic diversity among cytoplasms of Triticum and Aegilops species. 4. ctDNA variation in Ae. triuncialis. Heredity 57: 335339.
  • Obbard DJ, Harris SA, Pannell JR. 2006. Sexual systems and population genetic structure in an annual plant: testing the metapopulation model. The American Naturalist 167: 354366.
  • Ortiz MA, Tremetsberger K, Terrab A, Stuessy TF, Garcia-Castano JL, Urtubey E, Baeza CM, Ruas CF, Gibbs PE, Talavera S. 2008. Phylogeography of the invasive weed Hypochaeris radicata (Asteraceae): from Moroccan origin to worldwide introduced populations. Molecular Ecology 17: 36543667.
  • Parducci L, Szmidt AE, Madaghiele A, Anzidei M, Vendramin GG. 2001. Genetic variation at chloroplast microsatellites (cpSSRs) in Abies nebrodensis (Lojac.) Mattei and three neighboring Abies species. Theoretical and Applied Genetics 102: 733740.
  • Presti RM, Oberprieler C. 2009. Evolutionary history, biogeography and eco-climatological differentiation of the genus Anthemis L. (Compositae, Anthemideae) in the circum-Mediterranean area. Journal of Biogeography 36: 13131332.
  • R Development Core Team. 2009. R: a language and environment for statistical computing, reference index version 2.8.1. Vienna, Austria: R Foundation for Statistical Computing.
  • Resta P, Zhang HB, Dubcovsky J, Dvorak J. 1996. The origins of the genomes of Triticum biunciale, T. ovatum, T. neglectum, T. columnare, and T. rectum (Poaceae) based on variation in repeated nucleotide sequences. American Journal of Botany 83: 15561565.
  • Rodriguez-Sánchez F, Perez-Barrales R, Ojeda F, Vargas P, Arroyo J. 2008. The Strait of Gibraltar as a melting pot for plant biodiversity. Quaternary Science Reviews 27: 21002117.
  • Sasanuma T, Kadosumi S, Kawahara T. 2006. Multiple origins of U genome in two UM genome tetraploid Aegilops species, Ae. biuncialis and Ae. ovata. Wheat Info Service 101: 1112.
  • Schmitt T. 2007. Molecular biogeography of Europe: Pleistocene cycles and postglacial trends. Frontiers in Zoology 4, doi:10.1186/1742-9994-4-11.
  • Shaw J, Lickey EB, Beck JT, Farmer SB, Liu WS, Miller J, Siripun KC, Winder CT, Schilling EE, Small RL. 2005. The tortoise and the hare II: relative utility of 21 noncoding chloroplast DNA sequences for phylogenetic analysis. American Journal of Botany 92: 142166.
  • Shaw J, Lickey EB, Schilling EE, Small RL. 2007. Comparison of whole chloroplast genome sequences to choose noncoding regions for phylogenetic studies in angiosperms: the tortoise and the hare III. American Journal of Botany 94: 275288.
  • Taberlet P, Fumagalli L, Wust-Saucy AG, Cosson JF. 1998. Comparative phylogeography and postglacial colonization routes in Europe. Molecular Ecology 7:
  • Templeton AR, Crandall KA, Sing CF. 1992. A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimation. Genetics 132: 619633.
  • Terachi T, Ogihara Y, Tsunewaki K. 1984. The molecular-basis of genetic diversity among cytoplasms of Triticum and Aegilops. 3. Chloroplast genomes of the M and modified-M genome-carrying species. Genetics 108: 681695.
  • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. 1997. The Clustal X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research 25: 48764882.
  • Van Slageren MW. 1994. Wild wheats: a monograph of Aegilops L. and Ambylopyrum (Jaub and Spach) Eig (Poaceae). Wageningen, the Netherlands: Wageningen Agricultural University Papers, 9497.
  • Vanichanon A, Blake NK, Sherman JD, Talbert LE. 2003. Multiple origins of allopolyploid Aegilops triuncialis. Theoretical and Applied Genetics 106: 804810.
  • Vekemans X, Beauwens T, Lemaire M, Roldan-Ruiz I. 2002. Data from amplified fragment length polymorphism (AFLP) markers show indication of size homoplasy and of a relationship between degree of homoplasy and fragment size. Molecular Ecology 11: 139151.
  • Waines JG, Barnhart D. 1992. Biosystematic research in Aegilops and Triticum. Hereditas 116: 207212.
  • Wainwright J, Thornes JB. 2004. Environmental issues in the Mediterranean: processes and perspectives from the past and present. London, UK: Routledge.
  • Wang GZ, Matsuoka Y, Tsunewaki K. 2000. Evolutionary features of chondriome divergence in Triticum (wheat) and Aegilops shown by RFLP analysis of mitochondrial DNAs. Theoretical and Applied Genetics 100: 221231.
  • Wiens JJ, Donoghue MJ. 2004. Historical biogeography, ecology and species richness. Trends in Ecology & Evolution 19: 639644.
  • Zaharieva M, Dimov A, Stankova P, David J, Monneveux P. 2003. Morphological diversity and potential interest for wheat improvement of three Aegilops L. species from Bulgaria. Genetic Resources and Crop Evolution 50: 507517.
  • Zaharieva M, Gaulin E, Havaux M, Acevedo E, Monneveux P. 2001a. Drought and heat responses in the wild wheat relative Aegilops geniculata Roth: potential interest for wheat improvement. Crop Science 41: 13211329.
  • Zaharieva M, Santoni S, David J. 2001b. Use of RFLP markers to study genetic diversity and to build a core-collection of the wild wheat relative Ae. geniculata Roth (= Ae. ovata L.). Genetics Selection Evolution 33: S269S288.
  • Zeder M. 2008. Domestication and early agriculture in the Mediterranean basin: origins, diffusion and impact. Proceedings of the National Academy of Sciences, USA 105: 1159711604.
  • Zeder M, Emshwiller E, Smith BD, Bradley D. 2006. Documenting domestication: the intersection of genetics and archaeology. Trends in Genetics 22: 139155.