•Competing evolutionary forces shape plant breeding systems (e.g. inbreeding depression, reproductive assurance). Which of these forces prevails in a given population or species is predicted to depend upon such factors as life history, ecological conditions, and geographical context. Here, we examined two such predictions: that self-compatibility should be associated with the annual life history or extreme climatic conditions.
•We analyzed data from a clade of plants remarkable for variation in breeding system, life history and climatic conditions (Oenothera, sections Anogra and Kleinia, Onagraceae). We used a phylogenetic comparative approach and Bayesian or hybrid Bayesian tests to account for phylogenetic uncertainty. Geographic information system (GIS)-based climate data and ecological niche modeling allowed us to quantify climatic conditions.
•Breeding system and reproductive life span are not correlated in Anogra and Kleinia. Instead, self-compatibility is associated with the extremes of temperature in the coldest part of the year and precipitation in the driest part of the year.
•In the 60 yr since this pattern was anticipated, this is the first demonstration of a relationship between the evolution of self-compatibility and climatic extremes. We discuss possible explanations for this pattern and possible implications with respect to anthropogenic climate change.
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Which of these competing forces wins out in shaping the breeding system of a particular species or population is context-dependent, including factors such as life history, ecological conditions, and geographical context. For example, it is thought that selection for reproductive assurance should be stronger in plants that have just one opportunity to reproduce in their lifetime (annuals, monocarpic perennials) compared with plants that have several chances to reproduce (polycarpic perennials; Morgan et al., 1997; Morgan, 2001). Thus annuals should be more likely than perennials to evolve self-compatibility, whereas perennials should be more likely to retain self-incompatibility (Stebbins, 1950; pp. 176–181). This prediction has been borne out in some surveys of plant breeding systems (Barrett et al., 1996) but not in others (Raven, 1979).
Ecological conditions are also thought to modify selection on plant breeding systems. Insect pollinator abundance can be low under cold conditions (i.e. at high elevations and latitudes), which might increase selection for reproductive assurance in the plants found there (Moldenke, 1979; Kalin Arroyo et al., 1985; Korner, 1999; but see Garcia-Camacho & Totland, 2009). Extremely arid conditions are associated with variation in reproductive success (Beatley, 1974; Kadmon & Schmida, 1990; Philippi, 1993; Clauss & Venable, 2000; Schemske & Bierzychudek, 2001), which may generate selection for reproductive assurance. Stebbins (1950) generalized this by suggesting that extreme conditions should favor the evolution of selfing: ‘selection in favor of self-fertilization is very likely to occur in all annuals and other short-lived plants living in deserts, alpine or arctic regions, or other extreme environments’. Lloyd (1992) made a similar association between environmental conditions (extreme temperatures, high latitudes and altitudes) and selfing.
Here we evaluate patterns of covariation and coevolution of reproductive life span (annual vs iteroparous perennial), breeding system, and climatic conditions in a clade of plants found in western North America: Oenothera sections Anogra and Kleinia (Onagraceae). This group of 19 taxa is remarkable for variation in climatic conditions, life history, and breeding system (Table 1). Some of the Anogra and Kleinia taxa are found in low-elevation deserts of the southwestern USA, others in semiarid grasslands, and others in alpine meadows in the Rocky Mountain region (Wagner et al., 2007; Evans et al., 2009). Ten of the Anogra and Kleinia taxa are self-incompatible, four are polymorphic in breeding system (either among or within populations), and five are self-compatible (Klein, 1970; Raven, 1979; Theiss et al., 2010). In this same group, 10 are perennial, two are variable in life history, and seven are annual (Klein, 1970; Evans et al., 2005; Wagner et al., 2007). This variation makes the Anogra + Kleinia clade an excellent group in which to evaluate coevolution of: breeding system and reproductive life span; and breeding system and climate. We use a molecular phylogenetic comparative approach to account for nonindependence of taxa. Because of the young age of the Anogra + Kleinia radiation (crown date within the last 1 million yr; Evans et al., 2009), there is considerable phylogenetic uncertainty (Fig. 1a), which we account for using a sample from the posterior distribution of Bayesian phylogenetic trees. We use geographic information system (GIS)-based climate data and ecological niche modeling to quantify the climatic conditions where the Anogra + Kleinia taxa are found. Using the combination of phylogenetic hypotheses, trait data, and climatic niche estimates, we evaluate the predictions that: the perennial habit should be associated with self-incompatibility and the annual habit with self-compatibility; and self-compatibility should be associated with ecologically marginal conditions.
Table 1. Life history (LH), breeding system (BS), and climate data for all taxa in sections Anogra and Kleinia, Oenothera, Onagraceae
Life history states are annual (A), biennial (B), and perennial (P). Breeding system states are self-incompatible (SI) and self-compatible (SC). Climate variables are precipitation in the driest month (Pdry), precipitation in the driest quarter (Pdry¼), mean temperature in the coldest quarter (Tcold¼), and minimum temperature in the coldest month (Tmin).
Climatic conditions were characterized as described in Evans et al. (2009), using ecological niche or bioclimatic niche modeling as implemented by Maxent (Phillips et al., 2006). We created predictions of each taxon’s geographic range based on locality and climate data. These predictions, which take the form of probability distributions (when using Maxent), were integrated with respect to each climate variable (see Fig. 3f in Evans et al., 2009). This takes into account variation in climatic conditions across the entire (predicted) geographic range of each taxon. Here we use the weighted mean (across each geographic range) per climate variable for further analyses.
We used aligned DNA sequence data from Evans et al. (2009) to generate phylogenetic hypotheses for Anogra + Kleinia. This included sequences for six gene regions: one nuclear (ITS) and five chloroplast spacer regions (trnH-trnK, trnL-trnF, rpoB-trnC, trnD-trnT, and trnS-trnG), for a total of 6491 base pairs. These six regions were analyzed as a combined data set, based on a partition homogeneity test (Evans et al., 2009). Substitution models were as in Evans et al. (2009). Oenothera xylocarpa was used as the outgroup for rooting purposes. We estimated the posterior distribution of trees using the MC3 algorithm in MrBayes (version 3.1.2; Ronquist & Huelsenbeck, 2003). Four chains were run for 107 generations. We examined convergence by plotting the likelihood values and removed the first 2 × 106 generations as burn-in. The post-burn-in sample included every 1000th generation. This was replicated twice, yielding a posterior sample of 16 000 trees. The consensus tree has considerable phylogenetic uncertainty, as well as three strongly supported groupings (posterior probabilities > 0.99): O. nuttallii and O. coronopifolia, the four subspecies of O. pallida, and the three subspecies of O. californica plus O. arizonica and O. neomexicana (Fig. 1a). The five subspecies of O. deltoides plus O. wigginsii may or may not form a clade (compare the placement of O. deltoides ssp. ambigua in Fig. 1a and b). Oenothera albicaulis and O. engelmannii form a clade or grade outside the pallida, californica, and deltoides groups.
We used BayesTraits (version 1.0; Pagel & Meade, 2006) to test the fit (marginal likelihood) of the data to two alternative models of the evolution of breeding system and life history: the two traits evolve independently or they depend upon one another (Pagel, 1994). BayesTraits compares the two models using Bayes factor, that is, the ratio of the marginal likelihood of the independent model to the dependent model. The marginal likelihoods are estimated by the harmonic mean of the likelihoods over a large number of (post burn-in) iterations of a Markov chain Monte Carlo (MCMC) simulation, thus integrating over phylogenetic and parameter uncertainty. The transition rates were assigned exponential priors, with a uniform hyperprior (0, 30) for the parameters governing these exponential distributions. The MCMC simulation was run for 106 generations, sampling every 103 generations. The first 5 × 104 generations were discarded as burn-in. Life history and breeding system were each assigned a binary coding scheme. We considered two coding schemes for each trait, but because the results changed little with coding scheme, we present only the results from grouping the two taxa that are variable in life history with perennials. The five taxa that are variable in breeding system were either grouped with the self-compatible taxa (coding scheme ‘BS1’) or grouped with the self-incompatible taxa (‘BS2’). For breeding system, we constrained the rate of the ‘backwards’ transition (evolution of self-incompatibility from self-compatibility) to 0.001, because it is unlikely for a second mutation to repair the self-incompatibility system after it has been disabled (Igic et al., 2008; Goldberg et al., 2010), and we set the state at the root node to be self-incompatible (Goldberg & Igic, 2008). Because there is not a similar strong argument for constraining the model of life history evolution, we conducted simulations under the possible alternatives: the backwards transition (from annual back to perennial) constrained or unconstrained, and the root state constrained to perennial or annual.
We also conducted stochastic mapping (sensuNielsen, 2002; Huelsenbeck et al., 2003) of breeding system and life history using Mesquite (version 2.74; Maddison & Maddison, 2010), to evaluate their evolutionary lability. Evolutionary parameters were estimated using maximum likelihood inference on a posterior sample of 16 000 trees. Specifically, transition rates among breeding systems were estimated under an asymmetrical two-parameter Markov model, with the rate of the ‘backwards’ transition (evolution of self-incompatibility from self-compatibility) set at 0.001. For life history, we considered both an asymmetrical two-parameter model (constraining the transition from annual to perennial to 0.001) and a symmetrical one-parameter model.
To evaluate the correlated evolution of breeding system and climate, we calculated phylogenetically independent contrasts on the same posterior sample of 16 000 trees. If there is no association between breeding system and climate, the sum of the contrasts (on any given tree) should be zero or close to zero. The significance of any deviation from zero is evaluated using a t-test. However, an association between changes to self-compatibility and extreme environments cannot be detected with a straightforward implementation of this method, because positive contrasts towards one extreme of a climate variable would be cancelled out by negative contrasts towards the other extreme, summing to zero, leading to the inference of no association. Thus we rescaled climate data: the center of the range of variation for a climate variable was set to zero, and deviations in both directions were given positive values. For example, if the original climate data were 1, 2, 3, 4, 5, 6, 7, 8, 9, the rescaled climate data were 4, 3, 2, 1, 0, 1, 2, 3, 4. We used a one-sided t-test of the deviation of phylogenetically independent contrasts from zero since we had a specific hypothesis about the direction of change in climate (towards the extremes) that should be associated with the evolution of self-compatibility. In addition, we report the results of tests that do not correct for relatedness: logistic regressions relating breeding system to climate, with a quadratic term to fit the nonlinear response.
Both breeding system and life history have been evolutionarily labile in Anogra and Kleinia, but they have not evolved in a correlated fashion (Fig. 1b). Stochastic mapping suggests that self-compatibility evolved from self-incompatibility 8.7 times in the Anogra + Kleinia clade (on average, across the posterior sample of phylogenetic trees). With the backwards life history transition constrained, stochastic mapping produced an average of 5.9 changes to the annual habit (compared with an average of 18.5 changes in life history when the backwards transition is unconstrained). We found only weak support for correlated evolution of breeding system and life history: with the root states set to self-incompatible and perennial, and both backwards transitions set at 0.001 (thus constraining the evolution of the two characters towards the predicted combination of self-incompatible and perennial), Bayes factor favoring the dependent model was only 2.90 (a Bayes factor > 3 is necessary for the evidence in favor of the preferred model to be regarded as substantial; Jeffreys, 1961). When the backwards transition for life history is unconstrained (which is a more likely model for life history evolution; Young & Augspurger, 1991; Lesica & Young, 2005; Good-Avila et al., 2006; Tank & Olmstead, 2008), the Bayes factor is −2.40 against the dependent model (see Fig. 1b). Across all coding schemes for breeding system and life history, different states at the root node (for life history), and constrained vs unconstrained models of the backwards transition (for life history), Bayes factor for the dependent vs independent model ranged from −17.08 to 3.04.
By contrast, we found that changes to self-compatibility were strongly associated with evolution towards the extremes of certain climate variables (Table 1, Fig. 2). Contrasts of climate with respect to breeding system that were significantly different from zero on the maximum a posteriori (MAP) tree include minimum temperature in the coldest month (P = 0.025), mean temperature in the coldest quarter (P = 0.016), precipitation in the driest month (P = 0.022), and precipitation in the driest quarter (P = 0.029; Supporting Information, Table S1). This was in spite of low power: just seven contrasts on the MAP tree. Contrasts of these four variables were significant on 707 of 1000 probable trees (minimum temperature in the coldest month), 797 of 1000 trees (mean temperature in the coldest quarter), 956 of 1000 trees (precipitation in the driest month), and 854 of 1000 trees (precipitation in the driest quarter; Table S1). Changes to self-compatibility were associated with evolution towards the extremes of these same four climate variables under a more restrictive coding scheme for breeding system (BS2; Table S1). Thus this result is quite robust to coding scheme and phylogenetic uncertainty, especially considering the small number of contrasts. Logistic regressions of the relationship between breeding system and climate (that do not correct for relatedness) showed similar patterns, with the exception that mean temperature in the coldest quarter was not significantly related to breeding system (though minimum temperature in the coldest month was related; Table S1).
Since minimum temperature in the coldest month and mean temperature in the coldest quarter are correlated, and precipitation in the driest month and precipitation in the driest quarter are correlated, we can speak of essentially two climate variables that correlate with breeding system: winter minimum temperatures and precipitation in the driest part of the year.
This study affirms the notion that breeding system evolution is context-dependent, though not always in the classic manner expected. It has long been predicted that annuals are more likely than perennials to be self-compatible (Stebbins, 1950; Barrett et al., 1996), but in the Anogra + Kleinia clade, breeding system does not correlate with reproductive life span in this manner. Four of seven annuals are self-incompatible, and two of 10 perennials are self-compatible (with another three variable in compatibility; Table 1, Fig. 1b). While the Anogra + Kleinia clade is small, Raven (1979) made the same conclusion for the Onagraceae as a whole: among the 581 species for which data were available, an approximately equal fraction were modally outcrossing vs selfing. Many of the annuals in the Anogra + Kleinia clade are desert annuals (Evans et al., 2005; Wagner et al., 2007), which often have seed banks (Venable & Pake, 1999; Evans et al., 2007). Seed banks buffer environmental variation in reproductive success (Philippi & Seger, 1989; Pake & Venable, 1996; Evans & Dennehy, 2005; Meyer et al., 2006), which should reduce selection for reproductive assurance and modify the prediction for self-compatibility in annuals. While life history should be expected to affect selection on the breeding system, many life history traits can affect reproductive success, so we should expect more than one to be important, for example, reproductive life span and seed banking.
Instead of reproductive life span, climate correlates with breeding system in the Anogra + Kleinia clade. The extremes of temperature in the coldest part of the year and precipitation in the driest part of the year are associated with the evolution of self-compatibility. Note that Stebbins (1950) predicted extreme environments should select for self-fertilization, whereas we found an association with self-compatibility. We take self-compatibility as a mark of selection for reproductive assurance (as a working hypothesis for our 19 study taxa; though see the detailed work of Herlihy & Eckert, 2002 on Aquilegia canadensis). We discuss two sources of selection for reproductive assurance, pollinator limitation and mate limitation, and their relationship to climate. Pollinator limitation seems likely in the evolutionary history of O. neomexicana, which is reported to self-fertilize (autonomously set seed; Theiss et al., 2010), and thus has been freed from dependence on insects for pollination. Oenothera neomexicana is a perennial found from 1800 to 2700 m in mountains (‘sky islands’) of New Mexico and Arizona, where pollinator activity may be limited or variable because of cold temperatures (Moldenke, 1979; Kalin Arroyo et al., 1985; Korner, 1999; Carlson et al., 2008). At the other end of the temperature spectrum, O. wigginsii in the Sonoran desert is the only other Anogra + Kleinia taxon reported to set ‘abundant’ seed via spontaneous selfing (Klein, 1970). It is not clear why O. wigginsii would experience poorer pollinator service than neighboring Anogra + Kleinia taxa (O. arizonica and O. deltoides ssp. deltoides in the Sonoran desert, O. californica ssp. californica in southern California), though, interestingly, the first is self-compatible and the latter two polymorphic in breeding system. While self-compatibility alone (as opposed to self-fertilization) is not expected to provide reproductive assurance against pollinator limitation, low amounts of spontaneous selfing may occasionally prevent total reproductive failure, which may be relevant in the arid southwestern USA.
The alternative is that selection for reproductive assurance (and the evolution of self-compatibility) could be related to mate limitation, specifically, extinction–colonization dynamics. Baker (1955, 1967) and Stebbins (1957) argued that self-compatibility is favored during colonization (known as ‘Baker’s law’). Baker’s law was originally framed in terms of colonization of islands, and plants in the Anogra + Kleinia clade are found on loose, coarse-grained soils (Klein, 1970; Wagner et al., 2007) that are distributed on the landscape in patches, much like islands. The evolution of self-compatibility can also occur with post-glacial colonization (Dobzhansky, 1950; Shimizu et al., 2004; Ansell et al., 2008; Guo et al., 2009; Winkler et al., 2010). Within Oenothera, Johnson et al. (2010) found that asexual species are more northerly-distributed than sexual species, which they attributed to the superior colonization ability associated with asexuality. The hypothesis of post-glacial range expansion (to explain the evolution of self-compatibility) could be relevant for three northerly-distributed perennials: O. coronopifolia, O. nuttallii, and O. pallida ssp. pallida. Cold winter temperatures are associated with their northern distribution.
Extinction–colonization dynamics on a much shorter timescale may occur in the arid southwestern USA (where winters are mild and there is little precipitation). There, the Anogra + Kleinia taxa are associated with washes, which periodically flood, potentially burying or displacing patches of plants. Combined with the wild fluctuations in abundance for which short-lived plants in the arid southwestern USA are known (Beatley, 1974; Schemske & Bierzychudek, 2001; Bowers, 2005; Evans et al., 2007; Venable, 2007), extinction–colonization dynamics are possibile. Self-compatibility is selected for in a metapopulation (Pannell & Barrett, 1998; Busch, 2005). This explanation for self-compatibility could apply to O. arizonica, O. californica ssp. californica, O. deltoides ssp. cognata, and O. deltoides ssp. deltoides.
Though the mechanism(s) remains uncertain at this point, the data from Anogra and Kleinia are consistent with the idea that short-lived plants under extreme conditions should experience selection for reproductive assurance (Stebbins, 1950). This is the first time, in the 60 yr since the idea was articulated, that a relationship has been demonstrated between the evolution of self-compatibility and climatic extremes. Integrating GIS-based environmental data into the comparative framework of evolutionary biology makes it possible to evaluate climatic and geographic predictions about trait evolution (Kozak et al., 2008; Swenson, 2008). In the Anogra + Kleinia clade, this pattern deserves further investigation: breeding systems are known from few populations per taxon, and some taxa have geographic ranges that cover large latitudinal or elevational gradients. Further, we do not yet know whether the currently delineated taxonomy of this group corresponds with independently evolving lineages (phylogenetic work thus far has relied on sampling from a single individual per taxon). The extreme environments pattern deserves investigation outside the Anogra + Kleinia clade as well. Many other groups of short-lived plants that have diversified across elevational or latitudinal gradients would be good candidates for testing the scope of Stebbins (1950) prediction.
What implications can be drawn from this study, with respect to plant diversity facing climate change? Anthropogenic climate change may favor leading-edge evolution of self-compatibility as appears to have been the case in the Pleistocene (Ansell et al., 2008; Guo et al., 2009; Winkler et al., 2010). In addition, climate change is expected to generate more extreme weather, and can produce phenological mismatches between plants and pollinators (Memmott et al., 2007; Hegland et al., 2009; Yang & Rudolf, 2010), both of which can lead to reproductive failure and hence increased selection for reproductive assurance. The evolution of self-compatibility may not be detrimental in the short-term (if selfing is limited, inbreeding depression is not strong, or it is quickly purged); selfing may even be associated with larger ranges at the timescale of sister taxa comparisons (Randle et al., 2009). But in the longer term, selfing is considered disadvantageous (Dobzhansky, 1950; Stebbins, 1950, 1957, 1974; Holsinger, 2000; Takebayashi & Morrell, 2001; Igic et al. 2008; Goldberg et al., 2010). Though the relationship is not inevitable, it is possible for climate change to favor the evolution of a mating system that reduces long-term evolutionary potential (in the extreme, known as ‘evolutionary suicide’; Dieckmann & Ferriere, 2004).
We thank Rob Raguso for generously sharing his seed collections, Warren Wagner for sharing locality data, Irene Till-Bottraud for discussions of pollinator availability at high altitudes, Brad Boyle for the suggestion of rescaling climate data, and J. C. Oliver for help with Mesquite. Three anonymous reviewers improved the manuscript. M.E.K.E. was supported by the Yale Institute for Biospheric Studies, the Centre National de la Recherche Scientifique, and the Agence Nationale de la Recherche, programme ‘6th extinction’, through the project EVORANGE (ANR-09-PEXT-011).