These two authors contributed equally to this work.
Transporters in Arabidopsis roots mediating uptake of amino acids at naturally occurring concentrations
Article first published online: 31 MAR 2011
© 2011 The Authors. New Phytologist © 2011 New Phytologist Trust
Volume 191, Issue 2, pages 459–467, July 2011
How to Cite
Svennerstam, H., Jämtgård, S., Ahmad, I., Huss-Danell, K., Näsholm, T. and Ganeteg, U. (2011), Transporters in Arabidopsis roots mediating uptake of amino acids at naturally occurring concentrations. New Phytologist, 191: 459–467. doi: 10.1111/j.1469-8137.2011.03699.x
- Issue published online: 29 JUN 2011
- Article first published online: 31 MAR 2011
- Received: 19 January 2011, Accepted: 16 February 2011
- amino acid permease 1 (AAP1);
- amino acid permease 5 (AAP5);
- lysine histidine transporter 1 (LHT1);
- •Recent studies of Arabidopsis have identified several transporters as being important for amino acid uptake.
- •We used Arabidopsis plants with altered expression of lysine histidine transporter 1 (LHT1), amino acid permease 1 (AAP1) and amino acid permease 5 (AAP5) with the aim of disentangling the roles of each transporter in the uptake of different amino acids at naturally occurring concentrations (2–50 μM).
- •LHT1 mutants displayed reduced uptake rates of l-Gln, l-Ala, l-Glu and l-Asp but not of l-Arg or l-Lys, while AAP5 mutants were affected in the uptake of l-Arg and l-Lys only. Double mutants (lht1aap5) exhibited reduced uptake of all tested amino acids. In the concentration range tested, AAP1 mutants did not display altered uptake rates for any of the studied amino acids. Expression analysis of amino acid transporter genes with important root functions revealed no major differences in the individual mutants other than for genes targeted for mutation.
- •We conclude that LHT1 and AAP5, but not AAP1, are crucial for amino acid uptake at concentrations typically found in soils. LHT1 and AAP5 displayed complementary affinity spectra, and no redundancy with respect to gene expression was found between the two transporters, suggesting these two transporters have separate roles in amino acid uptake.
Organic nitrogen (N) compounds, in particular amino acids, may function as N sources for plants in various ecosystems, and the capacity to absorb amino acids is present in both mycorrhizal and nonmycorrhizal plants (Näsholm et al., 2009). Plant uptake of amino acids was first described in the early 20th century (Hutchinson & Miller, 1911; Brigham, 1917) but has lately attracted renewed interest, as demonstrated by the range of more recent studies published in this field (for recent reviews, see Lipson & Näsholm, 2001; Näsholm & Persson, 2001; Schimel & Bennett, 2004; Rentsch et al., 2007; Näsholm et al., 2009). The actual benefit to plants absorbing such compounds is, however, still uncertain. Moreover, in contrast to the extensive information available on the molecular biology and physiology of plant inorganic N nutrition, our knowledge of the mechanisms underpinning plant organic N nutrition is still very limited.
Plant uptake of amino acids is energized by the proton gradient over the plasma membrane and facilitated by transport proteins (cf. Liu & Bush, 2006; Rentsch et al., 2007; Näsholm et al., 2009). These transporters may function in the acquisition of amino acids from the soil solution as well as in the recapture of amino acids leaking from roots (Jones et al., 2005; Näsholm et al., 2009). Early studies led to the hypothesis that plants have two separate transport systems, one for neutral/acidic amino acids and one for basic amino acids (Kinraide, 1981; Datko & Mudd, 1985; Borstlap et al., 1986; Schobert & Komor, 1987). The kinetics of root amino acid uptake has been investigated over widely varying amino acid concentration ranges. Because of this, available information about the kinetics of plant amino acid uptake is associated with a high degree of variability both within and between species, and the concentrations used have ranged from the low μM range (Soldal & Nissen, 1978; Schobert & Komor, 1987; Jämtgård et al., 2008) to several mM (Soldal & Nissen, 1978; Borstlap et al., 1986; Schobert & Komor, 1987).
Arabidopsis lysine histidine transporter 1 (LHT1), originally identified by Chen & Bush (1997), was the first transporter shown to be involved in amino acid uptake (Hirner et al., 2006; Svennerstam et al., 2007). LHT1 displays high affinity for neutral amino acids, l-His (Hirner et al., 2006; Svennerstam et al., 2007) and acidic amino acids (Hirner et al., 2006). The second transporter identified as having a role in amino acid uptake was Arabidopsis amino acid permease 1 (AAP1; Lee et al., 2007), which was shown to mediate uptake of several neutral amino acids as well as l-Glu and l-His but, similar to LHT1, activity for l-Arg and l-Lys was not detected. As neither AAP1 nor LHT1 displayed activity for l-Arg and l-Lys, Svennerstam et al. (2008) searched for a transporter mediating uptake of basic amino acids and found Arabidopsis amino acid permease 5 (AAP5) to be crucial for this function, thereby providing evidence for a third transporter mediating amino acid uptake.
In the work of Hirner et al. (2006), Lee et al. (2007) and Svennerstam et al. (2007, 2008), several studies of LHT1, AAP1 and AAP5 were performed in planta, in yeast and in Xenopus oocytes, thereby providing invaluable information about the biochemical and physiological properties of these transporters and of amino acid uptake in general. However, the relative importance of each of these three transporters for uptake of different amino acids at field-relevant concentrations is presently unclear. Moreover, the potential effects of mutations in single genes involved in amino acid uptake on expression of other candidate genes in this process are not known. Our aim in this study was therefore to disentangle the roles of individual amino acid transporters in uptake of neutral, acidic and basic amino acids at concentrations spanning the range typical of soils in agricultural and in temperate and boreal forest ecosystems. Concentrations of amino acids in soil solution in these soils generally have been found to be below 50 μM, with the exception of single measurements (Kielland, 1994; Raab et al., 1996, 1999; Henry & Jefferies, 2002; Jones et al., 2002, 2005; Yu et al., 2002; Öhlund, 2004; Jämtgård et al., 2008, 2010). We compared amino acid uptake rates in Arabidopsis wild-type plants with uptake rates in plants lacking functional expression of LHT1, AAP1 or AAP5 as well as a double mutant (lht1aap5) and a mutant in which LHT1 is overexpressed. To reveal potential interactions between amino acid transporters, we studied the effects of the mutations on gene expression of the targeted amino acid transporters (LHT1, AAP1 and AAP5) as well as expression of genes encoding amino acid permease 2 (AAP2) and amino acid permease 3 (AAP3), two transporters with potential roles in xylem/phloem transport of amino acids (Hirner et al., 1998; Okumoto et al., 2004).
Materials and Methods
Plant material and growth conditions
Wild-type Arabidopsis thaliana L. Heynh. (Columbia (Col-0)), the amino acid transporter mutants lht1-5 (Svennerstam et al., 2007), aap5-1 (Svennerstam et al., 2008), aap1-3 (see description in the next section) and lht1-5aap5-1 (double mutant; Svennerstam et al., 2008) and an LHT1 overexpressor (35SLHT1-2; Forsum et al., 2008) were grown on sterile vertical agar plates containing half-strength N-free Murashige and Skoog (MS) medium (Murashige & Skoog, 1962), 3 mM NO3−, 1% (w/v) agar and 0.5% (w/v) sucrose, buffered to pH 5.8 using 7.7 mM MES. Seeds were surface-sterilized (Forsum et al., 2008), sown onto plates and incubated in a cold room for 48 h (to optimize germination). The plates were then transferred to a climate chamber. All plant lines were grown for 18 d at 22°C with an 8 : 16 h light : dark regime (photosynthetic photon flux density 200 μmol m−2 s−1).
Arabidopsis mutants lacking functional AAP1 expression were originally characterized by Lee et al. (2007). We obtained a T-DNA mutant line from the GABI-Kat knockout collection (GABI-135G05; Rosso et al., 2003), and named the mutant aap1-3 to avoid confusion with the mutant lines used in Lee et al. (2007). Confirmation of T-DNA insertion in the AAP1 gene of aap1-3 was performed by PCR using an AAP1-specific primer and a primer specific for the T-DNA insert (data not shown). According to sequencing data from GABI-Kat, the insert was located in the first intron of AAP1 (Fig. 1a). RT-PCR reactions to confirm repression of AAP1 were performed using AAP1-specific primers spanning the insertion site (Fig. 1b). The constitutively expressed Arabidopsis actin gene (ACT2) was used as a control for equal loading of RNA in each reaction (An et al., 1996). Similarly to Lee et al. (2007), we found that aap1-3 plants were resistant to 10 mM l-Phe on agar media (data not shown).
Measurements of amino acid uptake
The uptake experiment was carried out using 2.5 kBq ml−1 of l-[U-14C]Gln (7.4 TBq mol−1), l-[U-14C]Asp (8.14 TBq mol−1), l-[U-14C]Ala (6.475 TBq mol−1), l-[U-14C]Arg (11.47 TBq mol−1), l-[U-14C]Glu (9.99 TBq mol−1) or l-[U-14C]Lys (9.25 TBq mol−1) at the concentrations 2, 5, 10, 25 and 50 μM.
Uptake solutions were buffered with 2.85 mM MES to pH 5.8 and contained 0.5 mM CaCl2 to preserve membrane integrity (Epstein, 1961). Immediately before the uptake experiment, plants were removed from the agar plates and their roots were washed in 0.5 mM CaCl2 and gently blotted on tissue paper. Roots of the intact plants were then submerged in 1 ml of a solution of the desired amino acid at the desired concentration for 60 min. In the same experiment, five plants were used for each plant line, amino acid and concentration, with each individual plant representing one replicate. Roots were washed three times in 0.5 mM CaCl2 and the plants were divided into roots and shoots, dried at 60°C and weighed. Roots and shoots were rehydrated separately in 200 μl of distilled water overnight. Plant tissues were digested by adding 1 ml of Soluene 350 (Perkin Elmer, Boston, MA, USA) in capped vials at 50°C overnight. After the addition of 6 ml of scintillation cocktail (Hionic Fluor; Perkin Elmer), the samples were assayed for 14C in a Beckman LS6500 scintillation counter (Beckman Coulter, Brea, CA, USA). Amino acid uptake was calculated from the sum of 14C in shoots and roots and was expressed per unit root dry mass. A control experiment, performed as described in the beginning of this section, established that amino acid uptake rates were constant during 90 min at amino acid concentrations of 2 and 50 μM (data not shown).
The maximum uptake rate (Vmax) and half saturation constant (Km) parameters were determined using both Hanes–Woolf plots and Michaelis–Menten nonlinear regression (prism 5; Graphpad Software, La Jolla, CA, USA) using all replicate samples (Table 1). The two methods gave similar results (Table 1), and therefore we only discuss the results for the Hanes–Woolf plots.
|Amino acid||Genotype||Km (μM)||Vmax (μmol g−1 root DW h−1)|
|l-Gln||Wild type||44.8 ± 21.8||41.0 ± 11.8||2.3 ± 0.64||2.1 ± 0.39|
|35SLHT1||26.1 ± 6.5||36.7 ± 7.3||6.7 ± 0.8||7.5 ± 0.95|
|l-Arg||Wild type||7.4 ± 0.9||7.6 ± 1.2||4.0 ± 0.16||4.0 ± 0.15|
|35SLHT1||7.8 ± 1.1||7.5 ± 1.5||4.7 ± 0.2||4.6 ± 0.23|
|l-Lys||Wild type||27.7 ± 7.3||26.1 ± 5.6||7.7 ± 0.98||7.2 ± 0.85|
|35SLHT1||34.4 ± 6.9||25.1 ± 4.1||9.1 ± 0.96||7.8 ± 0.68|
Roots were collected from plants growing under the same conditions as the plants used in the uptake experiment. Roots were harvested from three biological replicates (three pooled plants per replicate), briefly rinsed in water, gently blotted dry on tissue paper and frozen in liquid N2. RNA was prepared using the EZNA Plant RNA Kit (Omega Bio-Tek, Norcross, GA, USA) and the samples were DNaseI-treated using DNA-free (Ambion Inc., Austin, TX, USA). One biological replicate from aap1-3 did not yield any RNA, and therefore the corresponding average is only based on two biological replicates. First-strand cDNA synthesis was performed using the Superscript III first-strand synthesis system (Invitrogen, Carlsbad, CA, USA) and amplification of the target genes was performed using Platinum Taq DNA polymerase (Invitrogen, Carlsbad, CA, USA). Gene-specific primers were used for each gene: (LHT1: 5′-AGTCATCGTTGCTTACATCGTCGT and 5′-TGGCGATAGGACCATCAAGAAAAGA; AAP1: 5′-TCTTACTCATTTTCTCGTTCATTAC and 5′-ACAATTTGGCTCAATAAACAGTCC; AAP2: 5′-ATAACCACCGTCACCACCAC and 5′-CAAGAGCTAGACCAATGGCAG; AAP3: 5′-TGCCGTCACTTATTTCACTTCTT and 5′-TTGAACTCGAAACCTGCTCTG; AAP5: 5′-TTGGGACAGTGACACTGAGTG and 5′-AACAATGCCAATAACAGATCCC). The linear range for each primer pair was determined. For each biological sample, three technical replicates of PCR amplification were performed. The gel images were visualized and the intensity of each band was analysed using the GelDoc System and QuantityOne software from Bio-Rad Laboratories (http://www.bio-rad.com). The Arabidopsis ACT2 gene (An et al., 1996) was used as an external standard. The wild-type gene expression relative to ACT2 was set to equal 1.0.
Uptake of amino acids at field-relevant concentrations
To investigate the amino acid uptake characteristics of Arabidopsis at naturally occurring concentrations, wild-type Arabidopsis plants, amino acid transporter T-DNA mutants for LHT1, AAP1 and AAP5, a double mutant (lht1aap5) and an LHT1 overexpressor were subjected to 2–50 μM of a neutral (l-Gln or L-Ala), acidic (l-Asp, l-Glu) or basic (l-Arg, l-Lys) amino acid.
Uptake rates vs substrate concentration plots are shown in Fig. 2. The uptake of l-Gln in the wild type, AAP5 mutants and AAP1 mutants saturated to varying degrees at higher substrate concentrations, whereas the uptake of l-Ala, l-Asp and l-Glu followed a linear pattern within the concentration range tested. Similarly, uptake of l-Arg and l-Lys in the wild-type, LHT1 mutants and AAP1 mutants was also saturated at higher substrate concentrations. In T-DNA knockout mutants with an altered amino acid uptake phenotype, the remaining uptake displayed linear kinetics within the concentration range tested.
In wild-type plants, the highest uptake rates were found for l-Ala, ranging from 0.56 μmol g−1 root DW h−1 at 2 μM amino acid to 8.11 μmol g−1 DW h−1 at 50 μM amino acid. Uptake of l-Lys was 0.56 μmol g−1 root DW h−1 at 2 μM and 5.01 μmol g−1 root DW h−1 at 50 μM. Uptake of l-Arg was intermediate at 0.67 to 3.44 μmol g−1 DW h−1, followed by l-Gln and l-Asp at 0.1 to 1.23 and 0.07 to 1.76 μmol g−1 root DW h−1, respectively. l-Glu was taken up at the lowest rates 0.02 μmol g−1 root DW h−1 at 2 μM and 0.48 μmol g−1 root DW h−1 at 50 μM.
As root uptake of the amino acids tested in this study displayed both saturating and linear kinetics, we also wanted to investigate how overexpression of an amino acid transporter affected amino acid uptake kinetics. Plants overexpressing AtLHT1, with increased uptake of neutral and acidic amino acids, have been characterized previously (Hirner et al., 2006; Forsum et al., 2008), and are excellent model plants with which to investigate whether uptake rates can be improved by increasing the expression of a gene encoding a transporter. The strong effect of overexpressing LHT1 is thus principally interesting as a contrast to the knock-out mutant of LHT1. Therefore, we subjected plants overexpressing LHT1 to the same experimental set-up as for the amino acid transporter deficient mutants (Fig. 3). No difference in uptake kinetics was seen for l-Arg and l-Lys. Overexpression of LHT1 resulted in increased uptake and saturating kinetics for l-Gln and increased but linear kinetics for l-Ala, l-Asp and l-Glu, in comparison to the wild-type plants (Fig. 3).
To further illustrate the impact of the individual amino acid transporter mutations on amino acid uptake, we calculated the uptake rates as compared with the wild type (Fig. 4). In the LHT1 mutant, uptake of l-Gln, l-Ala, l-Glu and l-Asp was greatly reduced by on average 61–85% over the entire concentration range, while the uptake of l-Arg and l-Lys was unaffected. Uptake of l-Arg and l-Lys was strongly affected in the AAP5 mutants, being reduced by on average 68–88%. AAP1 mutants did not display any major differences in the uptake of any of the amino acids tested. However, uptake of l-Arg at 2, 10 and 25 μM, and of l-Lys at 25 μM was slightly increased, being 123–140% of wild-type values. Uptake of all amino acids tested was greatly decreased in the double mutants as compared with the wild type and was similar to the uptake rates found for lht1-5 (l-Gln, l-Ala, l-Glu and l-Asp) and aap5-1 (l-Arg and l-Lys). The LHT1 overexpressor showed strongly increased uptake of l-Gln, l-Ala, l-Glu and l-Asp, with uptake rates of between 219 and 456% of wild-type uptake.
Kinetics of amino acid uptake
The primary goal of the current study was to characterize amino acid uptake at concentrations relevant for soils of different ecosystems. Nevertheless, this concentration range allowed for calculations of kinetic parameters of uptake of three of the studied amino acids (Table 1). We calculated Km and Vmax only on wild-type plants and the LHT1 overexpressor plants because of the lack of saturation of uptake rates in the other genotypes. Similarly, kinetic parameters were only calculated for l-Gln, l-Arg and l-Lys because l-Ala, l-Glu and l-Asp uptake did not saturate within the concentration range tested. The calculations of Km and Vmax revealed possible differences in affinity for the amino acids tested in Arabidopsis. Uptake of l-Gln in wild-type plants displayed a Km of 41 μM and a Vmax of 2.1 μmol g−1 root DW h−1. The LHT1 overexpressor had a similar Km for l-Gln uptake but Vmax was approx. 3 times higher than in the wild type. Arabidopsis wild-type plants displayed c. 4 and 5 times higher affinity for l-Arg than for l-Lys and l-Gln, respectively. The LHT1 overexpressor was not significantly different from the wild type with respect to Km and Vmax for l-Arg or l-Lys, corroborating a lack of function of this transporter for basic amino acids (cf. Svennerstam et al., 2008).
Expression of amino acid transporter genes in roots of the transporter mutants
We examined whether there were any major alterations in gene expression that can affect amino acid uptake in the mutants (other than in the genes targeted for mutation). The relative gene expression of the amino acid transporters known to be involved in amino acid uptake, LHT1, AAP1 and AAP5 (Hirner et al., 2006; Lee et al., 2007; Svennerstam et al., 2007, 2008), was analysed in each genotype. In addition, the expression of the genes encoding AAP2 and AAP3 was analysed, as these transporters have been shown to have important functions in roots (Hirner et al., 1998; Okumoto et al., 2004) (Fig. 5). Transcripts corresponding to the genes targeted for mutation were not detected or were only present in trace amounts in the four T-DNA mutants. In addition, the expression of LHT1 in the overexpressor was 1.7 times as high as in the wild type. No major differences in gene expression of the other amino acid transporters were detected: their root expression levels of amino acid transporter genes ranged from 80 to 140% of wild-type values.
The present study shows that the activity of two amino acid transporters, LHT1 and AAP5, accounts for the majority of amino acid uptake in Arabidopsis at concentrations relevant for soil solution in cultivated and natural ecosystems. Moreover, LHT1 and AAP5 were found to be largely complementary to each other with respect to affinity spectra, so that LHT1 accounts for uptake of neutral and acidic amino acids while AAP5 accounts for uptake of basic amino acids. By contrast, the current study does not support a function of AAP1 in amino acid uptake at naturally occurring concentrations. The individual amino acid transporter mutations did not induce any changes in gene expression of two other transporters with potential function in amino acid uptake, which suggests that no redundancy between the studied transporters exists. These findings have major implications for our understanding of the physiology of plant organic N nutrition and suggest that nonmycorrhizal plants may rely on LHT1 and AAP5 to acquire N in the form of amino acids from soil.
Arabidopsis plants lacking functional expression of LHT1 or overexpressing LHT1 were affected in l-Gln, l-Ala and l-Asp uptake (Figs 2, 3), suggesting LHT1 to be crucial for l-Gln uptake at low concentrations. Further, the magnitude of the increase in the uptake rate for l-Gln (c. 400%) was similar to the magnitude of the increase in the growth response (c. 300%) of plants overexpressing LHT1 when grown on 0.5 mM l-Gln as the single N source (Forsum et al., 2008). Hence, a strong relationship between root uptake capacity and growth of Arabidopsis on l-Gln appears to exist.
l-Ala uptake was also significantly affected by altered LHT1 expression, as seen both in LHT1 mutants and in the LHT1 overexpressor (Figs 2, 3). These findings corroborate the suggestions by Hirner et al. (2006) and Svennerstam et al. (2007) that LHT1 is probably the most important transporter for root uptake of l-Ala at low concentrations. Furthermore, altering the expression of LHT1 also had a profound impact on the uptake of l-Asp, which is consistent with Hirner et al. (2006), who found that mutants with repressed or increased expression of LHT1 displayed significant reductions and increases, respectively, in uptake rates of L-Asp. In the current study, the concentration dependence of l-Asp uptake exhibited a clear linear pattern (Fig. 2). This lack of Michaelis–Menten kinetics for root uptake of acidic amino acids was also found in a study by Schobert & Komor (1987) and was interpreted as a sign of a separate uptake mechanism for such compounds. The present study shows, in agreement with the study by Hirner et al. (2006), that LHT1 is crucial for uptake of l-Asp as well as l-Gln and l-Ala, in spite of the different patterns of concentration dependence that these three amino acids display. Clearly, the idea that linear and saturated concentration-dependent uptake of amino acids indicates that different transporters are involved in the uptake process (Schobert & Komor, 1987) is not supported by the data presented here.
The strongly reduced uptake of l-Arg in the AAP5 mutant as compared with the wild type (Figs 2, 3) is similar to earlier findings (Svennerstam et al., 2008) suggesting that the main high-affinity transporter for l-Arg uptake in Arabidopsis roots is AAP5, and extends these findings to concentrations as low as 2 μM. Also, the double (lht1aap5) mutant displayed reduced uptake with rates only marginally lower than those in the AAP5 mutant (Figs 2, 3). Earlier studies have suggested that AAP5 may have high affinity for uptake of basic amino acids, in particular l-Lys and l-Arg, but also for neutral and acidic amino acids (Fischer et al., 1995; Boorer & Fischer, 1997). In the present study of intact plants, only uptake rates of l-Arg and l-Lys were affected, which suggests that the function of AAP5 in planta may be limited to uptake of basic amino acids.
Earlier studies suggested AAP1 to function in amino acid acquisition, as Arabidopsis mutants lacking AAP1 expression had severely reduced uptake of the neutral amino acids, l-Glu and l-His (but not l-Asp and l-Lys; Lee et al., 2007). Those uptake studies were performed on intact plants with roots supplied either with 10 mM of individual amino acids or with 150 μM of l-Ala or l-Glu. Further, the affinity of AAP1 for l-Ala determined in heterologous expression systems was estimated to 290 μM (yeast; Boorer et al., 1996) and 600 μM (oocytes; Hsu et al., 1993). It seems that AAP1 mediates uptake of amino acids such as l-Glu and l-Ala, but primarily when concentrations of amino acids exceed 100 μM. In the present study, the maximum concentration of individual amino acids was 50 μM; that is, a third of the lowest concentration employed by Lee et al. (2007). Under these conditions, we could not detect a significant effect of the aap1 mutation on uptake rates (Figs 2, 3). Furthermore, the remaining uptake rates of e.g. l-Ala in LHT1 mutants were only c. 20%, underscoring the importance of this transporter at the low end of concentration ranges in soil solutions of various ecosystems.
In the present study, the amino acid concentration range was chosen to represent soil solutions. For some amino acids, this concentration range was too narrow to allow calculation of kinetic properties. In spite of these shortcomings, the application of standard techniques for evaluation of kinetic parameters to our data gave interesting insights into uptake characteristics and effects of loss of individual transporters on these processes. For the amino acids tested, Arabidopsis displayed the highest affinity for l-Arg: wild-type plants had a Km of 7.6 μM, which is consistent with earlier studies (Soldal & Nissen, 1978; Jämtgård et al., 2008). The affinity for l-Gln was 41 μM, which is in accordance with a previous study by Wallenda & Read (1999), who found Km for l-Gln to be 19–130 μM in mycorrhizal roots of different forest tree species. The affinity for l-Lys also was within that range, at 26 μM (Table 1). The LHT1 overexpressor had a threefold higher maximum uptake rate as compared to wild type for l-Gln, while the half saturation constant was only marginally affected (Table 1). This illustrates how alterations in expression of genes encoding amino acid transporters may directly affect amino acid uptake rates but not uptake affinities.
Amino acid transporters are members of a vast gene family with overlapping expression patterns and substrate specificities. In Arabidopsis, at least 63 genes have been annotated as involved in amino acid transport (Wipf et al., 2002; Rentsch et al., 2007). Therefore, it is reasonable to assume that some degree of redundancy exists between amino acid transporters, and that the repression of one amino acid transporter may regulate other members of the gene family to compensate for the expression changes of the targeted gene product. In the present study, no major changes in gene expression other than in the genes targeted could be detected in the mutants (Fig. 5), which suggests that no redundancy exists amongst these genes. However, several amino acid transporters are expressed in Arabidopsis roots (Liu & Bush, 2006; Rentsch et al., 2007) and the exact function of each transporter has not yet been established. Thus, amino acid transporter genes or genes involved in N metabolism, but not analysed in this study, may be regulated in response to the mutations. Similarly, post-transcriptional regulation that can affect root amino acid uptake may occur in these plants.
Our results clearly show that Arabidopsis, similarly to barley (Hordeum vulgare; Jämtgård et al., 2008), has the capacity to take up amino acids at concentrations as low as 2 μM and throughout the entire concentration range tested. We can also conclude that the recorded amino acid uptake, whether it displayed saturating or linear characteristics, was carrier mediated, as the uptake of all amino acids tested was greatly reduced at all concentrations tested in Arabidopsis lines carrying a mutation in either the LHT1 or AAP5 gene. Our results support the suggestion by Svennerstam et al. (2008) that any overlap in the affinity spectra of LHT1 and AAP5 is limited. Our findings and previous in planta characterizations of LHT1 and AAP5 (Hirner et al., 2006; Svennerstam et al., 2007, 2008; Forsum et al., 2008) suggest these two transporters to be the most important for amino acid uptake in Arabidopsis, as little residual uptake was recorded in the double mutant. Together with the suggestion that l-Glu and l-His predominantly are taken up in their neutral form (Fischer et al., 2002) and the experimentally demonstrated LHT1 affinity for l-His, l-Glu and l-Asp (Hirner et al., 2006; Svennerstam et al., 2007), these findings indicate that it is possible that LHT1 and AAP5 represent the two transport systems that Kinraide (1981) postulated to exist.
We would like to thank Ann Sehlstedt and Margareta Zetherström for skilful work in the laboratory and Jun Yu and Kristi Kuljus for valuable advice regarding the statistical analysis. This study was supported by grants from the Kempe Foundation (T.N. and U.G.), the Swedish Research Council FORMAS (K.H.D. and T.N.), the Foundation for Strategic Research (T.N.), the Foundation for Strategic Environmental Research (T.N.), and the Carl Trygger Foundation for Scientific Research (U.G.).
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