Histone modifications and expression of DAM6 gene in peach are modulated during bud dormancy release in a cultivar-dependent manner
Version of Record online: 7 SEP 2011
© 2011 The Authors. New Phytologist © 2011 New Phytologist Trust
Volume 193, Issue 1, pages 67–80, January 2012
How to Cite
Leida, C., Conesa, A., Llácer, G., Badenes, M. L. and Ríos, G. (2012), Histone modifications and expression of DAM6 gene in peach are modulated during bud dormancy release in a cultivar-dependent manner. New Phytologist, 193: 67–80. doi: 10.1111/j.1469-8137.2011.03863.x
- Issue online: 2 DEC 2011
- Version of Record online: 7 SEP 2011
- Received: 9 June 2011, Accepted: 1 August 2011
- 1990. Basic local alignment search tool. Journal of Molecular Biology 215: 403–410. , , , , .
- 2009. Expression of the Arabidopsis mutant ABI1 gene alters abscisic acid sensitivity, stomatal development, and growth morphology in gray poplars. Plant Physiology 151: 2110–2119. , , , , , , , , .
- 2003. Induction and release of bud dormancy in woody perennials: a science comes of age. HortScience 38: 911–921. , , .
- 1997. Seasonal expression of a dehydrin gene in sibling deciduous and evergreen genotypes of peach (Prunus persica [L.] Batsch). Plant Molecular Biology 33: 61–70. , , , .
- 2004. Vernalization requires epigenetic silencing of FLC by histone methylation. Nature 427: 164–167. , , , , , .
- 2003. The major clades of MADS-box genes and their role in the development and evolution of flowering plants. Molecular Phylogenetics and Evolution 29: 464–489. , .
- 2008. Sequencing and annotation of the evergrowing locus in peach (Prunus persica [L.] Batsch) reveals a cluster of six MADS-box transcription factors as candidate genes for regulation of terminal bud formation. Tree Genetics and Genomes 4: 495–507. , , , , , , , .
- 2008. A PHD-Polycomb Repressive Complex 2 triggers the epigenetic silencing of FLC during vernalization. Proceedings of the National Academy of Sciences, USA 105: 16831–16836. , , , , .
- 2009. A single amino acid change in the enhancer of zeste ortholog CURLY LEAF results in vernalization-independent, rapid flowering in Arabidopsis. Plant Physiology 151: 1688–1697. , .
- 2010. Mapping quantitative trait loci associated with chilling requirement, heat requirement and bloom date in peach (Prunus persica). New Phytologist 185: 917–930. , , , , , , .
- 2009. PAP1 signaling involves MAPK signal transduction. Cellular and Molecular Life Sciences 66: 2195–2204. , , , , , , .
- 2010. Candidate genes associated with bud dormancy release in blackcurrant (Ribes nigrum L.). BMC Plant Biology 10: 202. , , , , , , , .
- 2011. Make hay when the sun shines: the role of MADS-box genes in temperature-dependent seasonal flowering responses. Plant Science 180: 447–453. , .
- 2011. Vernalization-mediated epigenetic silencing by a long intronic noncoding RNA. Science 331: 76–79. , .
- 2003. Knowing when to grow: signals regulating bud dormancy. Trends in Plant Science 8: 534–540. , , , .
- 2008. Transcriptome analysis identifies novel responses and potential regulatory genes involved in seasonal dormancy transitions of leafy spurge (Euphorbia esula L.). BMC Genomics 9: 536. , , , , .
- 2010. Characterization, expression and function of DORMANCY ASSOCIATED MADS-BOX genes from leafy spurge. Plant Molecular Biology 73: 169–179. , , , , .
- 2006. Subtractive cDNA libraries identify differentially expressed genes in dormant and growing buds of leafy spurge (Euphorbia esula). Plant Molecular Biology 61: 329–344. , , , , , .
- 2009. Phylogenetic analysis and molecular evolution of the dormancy associated MADS-box genes from peach. BMC Plant Biology 9: 81. , , , , .
- 2010a. Identification of genes associated with growth cessation and bud dormancy entrance using a dormancy-incapable tree mutant. BMC Plant Biology 10: 25. , , , .
- 2010b. Gene expression of DAM5 and DAM6 is suppressed by chilling temperatures and inversely correlated with bud break rate. Plant Molecular Biology 73: 157–167. , , .
- 2008. Overexpression of AtMYB44 enhances stomatal closure to confer abiotic stress tolerance in transgenic Arabidopsis. Plant Physiology 146: 623–635. , , , , , , , , .
- 1997. Accumulation of 19-kDa plasma membrane polypeptide during induction of freezing tolerance in wheat suspension-cultured cells by abscisic acid. Plant & Cell Physiology 38: 707–716. , , , .
- 2010. DREB2C interacts with ABF2, a bZIP protein regulating abscisic acid-responsive gene expression, and its overexpression affects abscisic acid sensitivity. Plant Physiology 153: 716–727. , , , , , , .
- 2004. Proteomic identification of annexins, calcium-dependent membrane binding proteins that mediate osmotic stress and abscisic acid signal transduction in Arabidopsis. Plant Cell 16: 1378–1391. , , , , , , .
- 2010. Identification of genes associated with bud dormancy release in Prunus persica by suppression subtractive hybridization. Tree Physiology 30: 655–666. , , , , , , .
- 2009. Dormancy-associated MADS genes from the EVG locus of peach (Prunus persica [L.] Batsch) have distinct seasonal and photoperiodic expression patterns. Journal of Experimental Botany 60: 3521–3530. , , , .
- 1998. Two transcription factors, DREB1 and DREB2, with an EREBP/AP2 DNA binding domain separate two cellular signal transduction pathways in drought- and low-temperature-responsive gene expression, respectively, in Arabidopsis. Plant Cell 10: 1391–1406. , , , , , , .
- 2010. H2O2 mediates the regulation of ABA catabolism and GA biosynthesis in Arabidopsis seed dormancy and germination. Journal of Experimental Botany 61: 2979–2990. , , , , .
- 2003. AFP is a novel negative regulator of ABA signaling that promotes ABI5 protein degradation. Genes and Development 17: 410–418. , , , .
- 2009. Transcript profiling in Vitis riparia during chilling requirement fulfillment reveals coordination of gene expression patterns with optimized bud break. Functional and Integrative Genomics 9: 81–96. , , , , , , .
- 2007. Co-ordinated gene expression during phases of dormancy release in raspberry (Rubus idaeus L.) buds. Journal of Experimental Botany 58: 1035–1045. , , , , , , , , , et al.
- 2006. Next station in microarray data analysis: GEPAS. Nucleic Acids Research 34: W486–W491. , , , , , , , , , et al.
- 2004. Overexpression of a zinc-finger protein gene from rice confers tolerance to cold, dehydration, and salt stress in transgenic tobacco. Proceedings of the National Academy of Sciences, USA 101: 6309–6314. , , .
- 2008. Development of ChillPeach genomic tools and identification of cold-responsive genes in peach fruit. Plant Molecular Biology 68: 379–397. , , , , , , , .
- 2009. Vernalization-induced flowering in cereals is associated with changes in histone methylation at the VERNALIZATION1 gene. Proceedings of the National Academy of Sciences, USA 106: 8386–8391. , , , , .
- 2008. H2O2 is involved in the dormancy-breaking effect of hydrogen cyanamide in grapevine buds. Plant Growth Regulation 55: 149–155. , , .
- 2007. Plant dormancy in the perennial context. Trends in Plant Science 12: 217–223. , .
- 2002. PtABI3 impinges on the growth and differentiation of embryonic leaves during bud set in poplar. Plant Cell 14: 1885–1901. , , , , , .
- 2007. A molecular timetable for apical bud formation and dormancy induction in poplar. Plant Cell 19: 2370–2390. , , , , , , , , .
- 2008. An efficient chromatin immunoprecipitation (ChIP) protocol for studying histone modifications in Arabidopsis plants. Nature Protocols 3: 1018–1025. , , .
- 1999. An improved RNA isolation method for plant tissues containing high levels of phenolic compounds or carbohydrates. Plant Molecular Biology Reporter 17: 11–17. , , , , .
- 2004. RNAPol-ChIP: a novel application of chromatin immunoprecipitation to the analysis of real-time gene transcription. Nucleic Acids Research 32: e88. , , , , , , , , , .
- 2006. The transcription factor FLC confers a flowering response to vernalization by repressing meristem competence and systemic signaling in Arabidopsis. Genes and Development 20: 898–912. , , , , , , , .
- 2006. KEEP ON GOING, a RING E3 ligase essential for Arabidopsis growth and development, is involved in abscisic acid signaling. Plant Cell 18: 3415–3428. , , , , .
- 2004. Vernalization in Arabidopsis thaliana is mediated by the PHD finger protein VIN3. Nature 427: 159–164. , .
- 2009. Cold-induced silencing by long antisense transcripts of an Arabidopsis Polycomb target. Nature 462: 799–802. , , , .
- 2008. Suppression subtractive hybridization and differential screening reveals endodormancy-associated expression of an SVP/AGL24-type MADS-box gene in lateral vegetative buds of Japanese apricot. Journal of American Society for Horticultural Science 133: 708–716. , , , , .
- 2011. Expressional regulation of PpDAM5 and PpDAM6, peach (Prunus persica) dormancy-associated MADS-box genes, by low temperature and dormancy-breaking reagent treatment. Journal of Experimental Botany 62: 3481–3488. , , , , , .