SEARCH

SEARCH BY CITATION

References

  • Aliscioni SS, Giussani LM, Zuloaga FO, Kellogg EA. 2003. A molecular phylogeny of Panicum (Poaceae: Paniceae): tests of monophyly and phylogenetic placement within the Panicoideae. American Journal of Botany 90: 796821.
  • Barker NP, Linder HP, Harley EH. 1995. Polyphyly of Arundinoideae (Poaceae): evidence from rbcL sequence data. Systematic Botany 20: 423435.
  • Barker NP, Linder HP, Harley EH. 1999. Sequences of the grass-specific insert in the chloroplast rpoC2 gene elucidate generic relationships of the Arundinoideae (Poaceae). Systematic Botany 23: 327350.
  • Bouchenak-Khelladi Y, Salamin N, Savolainen V, Forest F, van der Bank M, Chase MW, Hodkinson TR. 2008. Large multi-gene phylogenetic trees of the grasses (Poaceae): progress towards complete tribal and generic level sampling. Molecular Phylogenetics and Evolution 47: 488505.
  • Byrt CS, Grof CPL, Furbank RT. 2011. C4 plants as biofuel feedstocks: optimising biomass production and feedstock quality from a lignocellulosic perspective. Journal of Integrative Plant Biology 53: 120135.
  • Christin PA, Besnard G. 2009. Two independent C4 origins in Aristidoideae (Poaceae) revealed by the recruitment of distinct phosphoenolpyruvate carboxylase genes. American Journal of Botany 96: 22342239.
  • Christin PA, Besnard G, Samaritani E, Duvall MR, Hodkinson TR, Savolainen V, Salamin N. 2008. Oligocene CO2 decline promoted C4 photosynthesis in grasses. Current Biology 18: 3743.
  • Christin PA, Freckleton RP, Osborne CP. 2010. Can phylogenetics identify C4 origins and reversals? Trends in Ecology & Evolution 25: 403409.
  • Christin PA, Sage TL, Edwards EJ, Ogburn RM, Khoshravesh R, Sage RF. 2011. Complex evolutionary transitions and the significance of C3–C4 intermediate forms of photosynthesis in Molluginaceae. Evolution 65: 643660.
  • Christin PA, Salamin N, Savolainen V, Duvall MR, Besnard G. 2007. C4 photosynthesis evolved in grasses via parallel adaptive genetic changes. Current Biology 87: 12411247.
  • Christin PA, Salamin N, Vicentini A, Kellogg EA, Besnard G. 2009. Integrating phylogeny into studies of C4 variation in the grasses. Plant Physiology 149: 8287.
  • Clark LG, Zhang WP, Wendel JF. 1995. A phylogeny of the grass family (Poaceae) based on ndhF sequence data. Systematic Botany 20: 436460.
  • Clayton WD, Renvoize SA. 1986. Genera Graminum. Grasses of the world. Kew Bulletin, Additional Series 13: 1389.
  • Cousins AB, Badger MR, von Caemmerer S. 2008. C4 photosynthetic isotope exchange in NAD-ME and NADP-ME type grasses. Journal of Experimental Botany 59: 16951703.
  • Duvall MR, Davis JI, Clark LG, Noll JD, Goldman DH, Sánchez-Ken JG. 2007. Phylogeny of the grasses (Poaceae) revisited. Aliso 23: 237247.
  • Edwards EJ, Osborne CP, Stromberg CAE, Smith SA, C4 Grass consortium. 2010. The origins of C4 grasslands: integrating evolutionary and ecosystem science. Science 328: 587591.
  • Edwards EJ, Smith SA. 2010. Phylogenetic analyses reveal the shady history of C4 grasses. Proceedings of the National Academy of Sciences, USA 107: 25322537.
  • Fitzjohn RG, Maddison WP, Otto SP. 2009. Estimating trait-dependent speciation and extinction rates form incompletely resolved phylogenies. Systematic Biology 58: 595611.
  • Ghannoum O, Evans JR, Chow WS, Andrews TJ, Conroy JP, von Caemmerer S. 2005. Faster Rubisco is the key to superior nitrogen use efficiency in NADP-ME relative to NAD-ME C4 grasses. Plant Physiology 137: 638650.
  • Giussani LM, Cota-Sanchez JH, Zuloaga FO, Kellogg EA. 2001. A molecular phylogeny of the grass subfamily Panicoideae (Poaceae) shows multiple origins of C4 photosynthesis. American Journal of Botany 88: 19932012.
  • GPWG (Grass Phylogeny Working Group). 2001. Phylogeny and subfamilial classification of the grasses (Poaceae). Annals of the Missouri Botanical Garden 88: 373457.
  • Hilu KW, Alice LA. 2001. A phylogeny of Chloridoideae (Poaceae) based on matK Sequences. Systematic Botany 26: 386405.
  • Hilu KW, Alice LA, Liang H. 1999. Phylogeny of Poaceae inferred from matK sequences. Annals of the Missouri Botanical Garden 86: 835851.
  • Hsiao C, Jacobs SWL, Chatterton NJ, Asay KH. 1999. A molecular phylogeny of the grass family (Poaceae) based on the sequences of nuclear ribosomal DNA (ITS). Australian Systematic Botany 11: 667688.
  • Ibrahim DG, Burke T, Ripley BS, Osborne CP. 2009. A molecular phylogeny of the genus Alloteropsis (Panicoideae, Poaceae) suggests an evolutionary reversion from C4 to C3 photosynthesis. Annals of Botany 103: 127136.
  • Ingram AL, Christin PA, Osborne CP. 2011. Molecular phylogenies disprove a hypothesized C4 reversion in Eragrostis walteri (Poaceae). Annals of Botany 107: 321325.
  • Kelchner SA. 2000. The evolution of noncoding chloroplast DNA and its application in plant systematics. Annals of the Missouri Botanical Garden 87: 482498.
  • Kellogg EA. 2000. The grasses: a case study in macroevolution. Annual Review of Ecology and Systematics 31: 217238.
  • Kellogg EA, Aliscioni S, Morrone O, Pensiero J, Zuloaga F. 2009. A phylogeny of Setaria (Poaceae, Panicoideae, Paniceae) and related genera based on the chloroplast gene ndhF. International Journal of Plant Sciences 170: 117131.
  • Maddison WP. 2006. Confounding asymmetries in evolutionary diversification and character change. Evolution 60: 17431746.
  • Maddison WP, Midford PE, Otto SP. 2007. Estimating a binary character’s effect on speciation and extinction. Systematic Biology 56: 701710.
  • Mathews S, Sharrock RA. 1996. The phytochrome gene family in grasses (Poaceae): a phylogeny and evidence that grasses have a subset of the loci found in dicot angiosperms. Molecular Biology and Evolution 13: 11411150.
  • McKown AD, Moncalvo JM, Dengler NG. 2005. Phylogeny of Flaveria (Asteraceae) and inference of C4 photosynthesis evolution. American Journal of Botany 92: 19111928.
  • Minin VN, Suchard MA. 2008. Fast, accurate and simulation-free stochastic mapping. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences 363: 39853995.
  • Morrone O, Aagesen L, Scataglini MA, Salariato DL, Denham SS, Chemisquy MA, Sede SM, Giussani LM, Kellogg EA, Zuloaga FO. 2011. Phylogeny of the Paniceae (Poaceae: Panicoideae): integrating plastid DNA sequences and morphology into a new classification. Cladistics, in press.
  • Morrone O, Denham SS, Aliscioni SS, Zuloaga FO. 2008. Parodiophyllochloa, a new genus segregated from Panicum (Paniceae, Poaceae) based on morphological and molecular data. Systematic Botany 33: 6676.
  • Morrone O, Scataglini MA, Zuloaga O. 2007. Cyphonanthus, a new genus segregated from Panicum (Poaceae: Panicoideae: Paniceae) based on morphological, anatomical and molecular data. Taxon 56: 521532.
  • Osborne CP, Freckleton RP. 2009. Ecological selection pressures for C4 photosynthesis in the grasses. Proceedings of the Royal Society Series B 276: 17531760.
  • Osborne CP, Visser V, Chapman S, Barker A, Freckleton RP, Salamin N, Simpson D, Uren V. 2011. GrassPortal: an online ecological and evolutionary data facility. [WWW document]. URL http://www.grassportal.org [accessed on 1 June 2011].
  • Pagel M. 1999. The maximum likelihood approach to reconstructing ancestral character states of discrete characters on phylogenies. Systematic Biology 48: 612622.
  • Peterson PM, Romaschenko K, Barker NP, Linder HP. 2011. Centropodieae and Ellisochloa, a new tribe and genus in Chloridoideae (Poaceae). Taxon 60: 11131122.
  • Peterson PM, Romaschenko K, Johnson G. 2010. A phylogeny and classification of the Muhlenbergiinae (Poaceae: Chloridoideae: Cynodonteae) based on plastid and nuclear DNA sequences. American Journal of Botany 97: 15321554.
  • Pirie MD, Lloyd KM, Lee WG, Linder HP. 2010. Diversification of Chionochloa (Poaceae) and biogeography of the New Zealand Southern Alps. Journal of Biogeography 37: 379392.
  • Rambaut A, Drummond AJ. 2007. Tracer v1.4. [WWW document]. URL http://beadt.bio.ed.ac.uk/Tracer. [accessed on 1 August 2011].
  • Roalson EH. 2011. Origins and transitions in photosynthetic pathway types in monocots: a review and reanalysis. In: Raghavendra AS, Sage RF, eds. C4 photosynthesis and related CO2 concentrating mechanisms. Dordrecht, the Netherlands: Springer, 319338.
  • Ronquist F, Huelsenbeck JP. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 15721574.
  • Saarela JM, Liu Q, Peterson PM, Soreng RJ, Paszko B. 2010. Phylogenetics of the grass ‘Aveneae-Type Plastid DNA Clade’ (Poaceae: Pooideae, Poeae) based on plastid and nuclear ribosomal DNA sequence data. In: Seberg O, Petersen G, Barfod AS, Davis J, eds. Diversity, phylogeny, and evolution in the monocotyledons. Aarhus, Denmark: Aarhus University Press, 557586.
  • Sage RF. 2004. The evolution of C4 photosynthesis. New Phytologist 161: 341370.
  • Salamin N, Hodkinson TR, Savolainen V. 2002. Building supertrees: an empirical assessment using the grass family (Poaceae). Systematic Biology 51: 136150.
  • Salariato DL, Zuloaga FO, Giussani LM, Morrone O. 2010. Molecular phylogeny of the subtribe Melinidinae (Poaceae: Panicoideae: Paniceae) and evolutionary trends in the homogenization of inflorescences. Molecular Phylogenetics and Evolution 56: 355369.
  • Sánchez-Ken JG, Clark LG, Kellogg EA, Kay EE. 2007. Reinstatement and emendation of subfamily Micrairoideae (Poaceae). Systematic Botany 32: 7180.
  • Sanderson MJ. 2003. R8s: inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock. Bioinformatics 19: 301302.
  • Schneider J, Doring E, Hilu KW, Roser M. 2009. Phylogenetic structure of the grass subfamily Pooideae based on comparison of plastid matK gene-3’trnK exon and nuclear ITS sequences. Taxon 58: 405424.
  • Sede SM, Morrone O, Giussani LM, Zuloaga FO. 2008. Phylogenetic studies in the Paniceae (Poaceae): a realignment of section Lorea of Panicum. Systematic Botany 33: 284300.
  • Sede SM, Zuloaga FO, Morrone O. 2009. Phylogenetic studies in the Paniceae (Poaceae-Panicoideae): Ocellochloa, a new genus from the New World. Systematic Botany 34: 684692.
  • Shimodaira H, Hasegawa M. 1999. Comparisons of log-likelihoods with applications to phylogenetic inference. Molecular Biology and Evolution 16: 11141116.
  • Sinha NR, Kellogg EA. 1996. Parallelism and diversity in multiple origins of C4 photosynthesis in the grass family. American Journal of Botany 83: 14581470.
  • Soreng RJ, Davis JI. 1998. Phylogenetics and character evolution in the grass family (Poaceae): simultaneous analysis of morphological and chloroplast DNA restriction site character sets. Botanical Review 64: 185.
  • Stamatakis A. 2006. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22: 26882690.
  • Still CJ, Berry JA, Collatz GJ, DeFries RS. 2003. Global distribution of C3 and C4 vegetation: carbon cycle implications. Global Biogeochemical Cycles 17: 1006.
  • Sungkaew S, Stapleton C, Salamin N, Hodkinson TR. 2009. Non-monophyly of the woody bamboos (Bambuseae; Poaceae): a multi-gene region phylogenetic analysis of Bambusoideae s.s. Journal of Plant Research 122: 95108.
  • Tang L, Zou XH, Achoundong G, Potgieter C, Second G, Zhang DY, Ge S. 2010. Phylogeny and biogeography of the rice tribe (Oryzeae): evidence from combined analysis of 20 chloroplast fragments. Molecular Phylogenetics and Evolution 54: 266277.
  • Taylor SH, Franks PI, Hulme SP, Spriggs E, Christin PA, Edwards EJ, Woodward FI, Osborne CP. 2011a. Photosynthetic pathway and ecological adaptation explain stomatal trait diversity amongst grasses. New Phytologist. doi: 10.1111/j.1469-8137.2011.03935.x
  • Taylor SH, Ripley BS, Woodward FI, Osborne CP. 2011b. Drought limitation of photosynthesis differs between C3 and C4 grass species in a comparative experiment. Plant, Cell & Environment 34: 6575.
  • Teerawatananon A, Jacobs SWL, Hodkinson TR. 2011. Phylogenetics of Panicoideae (Poaceae) based on chloroplast and nuclear DNA sequences. Telopea 13: 115142.
  • Thompson JD, Higgins DG, Gibson TJ. 1994. ClustalW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and matrix choice. Nucleic Acids Research 22: 46734680.
  • Tropicos. 2011. Tropicos.org. Missouri Botanical Garden. [WWW document]. URL http://www.tropicos.org. [accessed on 15 August 2010].
  • Vicentini A, Barber JC, Aliscioni SS, Giussani LM. 2008. The age of the grasses and clusters of origins of C4 photosynthesis. Global Change Biology 12: 29632977.
  • Watson L, Dallwitz MJ. 1992 onwards . The grass genera of the world: descriptions, illustrations, identification, and information retrieval; including synonyms, morphology, anatomy, physiology, phytochemistry, cytology, classification, pathogens, world and local distribution, and references. Version: 23 April 2010. [WWW document]. URL: http://delta-intkey.com/grass.
  • Zuloaga FO, Giussani LM, Morrone O. 2006. On the taxonomic position of Panicum aristellum (Poaceae: Panicoideae: Paniceae). Systematic Botany 31: 497505.
  • Zuloaga FO, Giussani LM, Morrone O. 2007b. Hopia, a new monotypic genus segregated from Panicum (Poaceae). Taxon 56: 145156.
  • Zuloaga FO, Morrone O, Davidse G, Pennington SJ. 2007a. Classification and biogeography of Panicoideae (Poaceae) in the New World. In: Columbus JT, Friar EA, Hamilton CW, Porter JM, Prince LM, Simpson MG, eds. Monocots: comparative biology and evolution – Poales. California, CA, USA: Rancho Santa Ana Botanic Garden, 503529.
  • Zuloaga FO, Morrone O, Scataglini MA. 2011. Monograph of Trichanthecium, a new genus segregated from Panicum (Poaceae, Paniceae) based on morphological and molecular data. Systematic Botany Monographs, in press.
  • Zuloaga FO, Scataglini MA, Morrone O. 2010. A phylogenetic evaluation of Panicum sects. Agrostoidea, Megista, Prionita and Tenera (Panicoideae, Poaceae): two new genera, Stephostachys and Sorengia. Taxon 59: 15351546.