SEARCH

SEARCH BY CITATION

References

  • Abramoff MD, Magelhaes PJ, Ram SJ. 2004. Image processing with ImageJ. Biophotonics International 11: 3642.
  • Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. 1990. Basic local alignment search tool. Journal of Molecular Biology 215: 403410.
  • Amtmann A, Sanders D. 1999. Mechanisms of Na+ uptake by plant cells. Advances in Botanical Research Incorporating Advances in Plant Pathology 29: 75112.
  • Andersson-Gunnerås S, Mellerowicz EJ, Love J, Segerman B, Ohmiya Y, Coutinho PM, Nilsson P, Henrissat B, Moritz T, Sundberg B. 2006. Biosynthesis of cellulose-enriched tension wood in Populus: global analysis of transcripts and metabolites identifies biochemical and developmental regulators in secondary wall biosynthesis. Plant Journal 45: 144165.
  • Arend M, Fromm J. 2007. Seasonal change in the drought response of wood cell development in poplar. Tree Physiology 27: 985992.
  • Bauer S, Grossmann S, Vingron M, Robinson PN. 2008. Ontologizer 2.0 – a multifunctional tool for GO term enrichment analysis and data exploration. Bioinformatics 24: 16501651.
  • Beniwal RS, Langenfeld-Heyser R, Polle A. 2010. Ectomycorrhiza and hydrogel protect hybrid poplar from water deficit and unravel plastic responses of xylem anatomy. Environmental and Experimental Botany 69: 189197.
  • Brinker M, Brosche M, Vinocur B, bo-Ogiala A, Fayyaz P, Janz D, Ottow EA, Cullmann AD, Saborowski J, Kangasjarvi J et al. 2010. Linking the salt transcriptome with physiological responses of a salt-resistant Populus species as a strategy to identify genes important for stress acclimation. Plant Physiology 154: 16971709.
  • Brosché M, Vinocur B, Alatalo ER, Lamminmaki A, Teichmann T, Ottow EA, Djilianov D, Afif D, Bogeat-Triboulot MB, Altman A et al. 2005. Gene expression and metabolite profiling of Populus euphratica growing in the Negev desert. Genome Biology 6: R101.
  • Brown DM, Zeef LAH, Ellis J, Goodacre R, Turner SR. 2005. Identification of novel genes in Arabidopsis involved in secondary cell wall formation using expression profiling and reverse genetics. Plant Cell 17: 22812295.
  • Chang S, Puryear J, Cairney J. 1993. A simple and efficient method for isolating RNA from pine trees. Plant Molecular Biology Reporter 11: 113116.
  • Chen S, Polle A. 2010. Salinity tolerance of Populus. Plant Biology 12: 317333.
  • Ding MQ, Hou PC, Shen X, Wang MJ, Deng SR, Sun J, Xiao F, Wang RG, Zhou XY, Lu CF et al. 2010. Salt-induced expression of genes related to Na+/K+ and ROS homeostasis in leaves of salt-resistant and salt-sensitive poplar species. Plant Molecular Biology 73: 251269.
  • Escalante-Perez M, Lautner S, Nehls U, Selle A, Teuber M, Schnitzler JP, Teichmann T, Fayyaz P, Hartung W, Polle A et al. 2009. Salt stress affects xylem differentiation of grey poplar (Populus × canescens). Planta 229: 299309.
  • FAO. 2006. World reference base for soil resources 2006. World Soil Recourses Reports No. 103. Food and Agriculture Organization of the United Nations. [WWW document] URL ftp://ftp.fao.org/agl/agll/docs/wsrr103e.pdf [accessed on 15 November 2011].
  • Fischer U, Polle A. 2010. Populus responses to abiotic stress. In: Jansson S, Bhalerao R, Groover A, eds. Genetics and genomics of Populus. Berlin, Germany: Springer Verlag, 225247.
  • Galvez DA, Landhausser SM, Tyree MT. 2011. Root carbon reserve dynamics in aspen seedlings: does simulated drought induce reserve limitation? Tree Physiology 31: 250257.
  • Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge YC, Gentry J et al. 2004. Bioconductor: open software development for computational biology and bioinformatics. Genome Biology 5: R80.
  • Gong QQ, Li PH, Ma SS, Rupassara SI, Bohnert HJ. 2005. Salinity stress adaptation competence in the extremophile Thellungiella halophila in comparison with its relative Arabidopsis thaliana. Plant Journal 44: 826839.
  • Guan Y, Nothnagel EA. 2004. Binding of arabinogalactan proteins by Yariv phenylglycoside triggers wound-like responses in Arabidopsis cell cultures. Plant Physiology 135: 13461366.
  • Hacke UG, Sperry JS. 2001. Functional and ecological xylem anatomy. Perspectives in Plant Ecology Evolution and Systematics 4: 97115.
  • Hacke UG, Sperry JS, Pockman WT, Davis SD, McCulloch KA. 2001. Trends in wood density and structure are linked to prevention of xylem implosion by negative pressure. Oecologia 126: 457461.
  • Heinrichs H, Brumsack HJ, Lotfield N, König N. 1986. Verbessertes Druckaufschlussystem für biologische und anorganische Materialien. Zeitschrift für Pflanzenernährung und Bodenkunde 149: 350353.
  • Hewitt EJ, Smith TA. 1975. Plant mineral nutrition. London, UK: English U.P.
  • Holtta T, Vesala T, Peramaki M, Nikinmaa E. 2002. Relationships between embolism, stem water tension, and diameter changes. Journal of Theoretical Biology 215: 2338.
  • Huang ZL, Meilan R, Woeste K. 2009. A KNAT3-like homeobox gene from Juglans nigra L., JnKNAT3-like, highly expressed during heartwood formation. Plant Cell Reports 28: 17171724.
  • Humphrey TV, Bonetta DT, Goring DR. 2007. Sentinels at the wall: cell wall receptors and sensors. New Phytologist 176: 721.
  • Irizarry RA, Hobbs B, Collin F, Beazer-Barclay YD, Antonellis KJ, Scherf U, Speed TP. 2003. Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics 4: 249264.
  • Irvine J, Grace J. 1997. Continuous measurements of water tensions in the xylem of trees based on the elastic properties of wood. Planta 202: 455461.
  • Janssonius H. 1950. The vessels in the wood of Javan mangrove trees. Blumea 6: 465469.
  • Janz D, Behnke K, Schnitzler JP, Kanawati B, Schmitt-Kopplin P, Polle A. 2010. Pathway analysis of the transcriptome and metabolome of salt sensitive and tolerant poplar species reveals evolutionary adaption of stress tolerance mechanisms. BMC Plant Biology 10: 150.
  • Johnson KL, Jones BJ, Bacic A, Schultz CJ. 2003. The fasciclin-like arabinogalactan proteins of Arabidopsis. A multigene family of putative cell adhesion molecules. Plant Physiology 133: 19111925.
  • Junghans U, Langenfeld-Heyser R, Polle A, Teichmann T. 2004. Effect of auxin transport inhibitors and ethylene on the wood anatomy of poplar. Plant Biology 6: 2229.
  • Junghans U, Polle A, Duchting P, Weiler E, Kuhlman B, Gruber F, Teichmann T. 2006. Adaptation to high salinity in poplar involves changes in xylem anatomy and auxin physiology. Plant, Cell & Environment 29: 15191531.
  • Kozlowski TT. 1997. Responses of woody plants to flooding and salinity. Tree Physiology Monographs 1: 129.
  • Kundzewicz ZW, Mata LJ, Arnell NW, Döll P, Kabat P, Jiménez B, Miller KA, Oki T, Sen Z, Shiklomanov IA. 2007. Freshwater resources and their management. In: Parry ML, Canziani OF, Palutikof JP, van der Linden PJ, Hanson CE, eds. Climate Change 2007: impacts, adaptation and vulnerability. Contribution of Working Group II to the Fourth Assessment Report of the Intergovernmental Panel on Climate Change. Cambridge, UK: Cambridge University Press, 173210.
  • Lafarguette F, Leple JC, Dejardin A, Laurans F, Costa G, Lesage-Descauses MC, Pilate G. 2004. Poplar genes encoding fasciclin-like arabinogalactan proteins are highly expressed in tension wood. New Phytologist 164: 107121.
  • Langer K, Ache P, Geiger D, Stinzing A, Arend M, Wind C, Regan S, Fromm J, Hedrich R. 2002. Poplar potassium transporters capable of controlling K+ homeostasis and K+-dependent xylogenesis. Plant Journal 32: 9971009.
  • Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R et al. 2007. Clustal W and clustal X version 2.0. Bioinformatics 23: 29472948.
  • Leplé JCC, Brasileiro ACM, Michel MF, Delmotte F, Jouanin L. 1992. Transgenic poplars – expression of chimeric genes using 4 different constructs. Plant Cell Reports 11: 137141.
  • Liphschitz N, Waisel Y. 1970. The effect of water stresses on radial growth of Populus euphratica Oliv. La Yaaran 20: 5363.
  • Love J, Bjorklund S, Vahala J, Hertzberg M, Kangasjarvi J, Sundberg B. 2009. Ethylene is an endogenous stimulator of cell division in the cambial meristem of Populus. Proceedings of the National Academy of Sciences, USA 106: 59845989.
  • Lukowitz W, Nickle TC, Meinke DW, Last RL, Conklin PL, Somerville CR. 2001. Arabidopsis cyt1 mutants are deficient in a mannose-1-phosphate guanylyltransferase and point to a requirement of N-linked glycosylation for cellulose biosynthesis. Proceedings of the National Academy of Sciences, USA 98: 22622267.
  • Luo ZB, Janz D, Jiang XN, Gobel C, Wildhagen H, Tan YP, Rennenberg H, Feussner I, Polle A. 2009a. Upgrading root physiology for stress tolerance by ectomycorrhizas: insights from metabolite and transcriptional profiling into reprogramming for stress anticipation. Plant Physiology 151: 19021917.
  • Luo ZB, Li K, Jiang XN, Polle A. 2009b. Ectomycorrhizal fungus (Paxillus involutus) and hydrogels affect performance of Populus euphratica exposed to drought stress. Annals of Forest Science 66: 106.
  • Ma S, Gong Q, Bohnert HJ. 2006. Dissecting salt stress pathways. Journal of Experimental Botany 57: 10971107.
  • MacMillan CP, Mansfield SD, Stachurski ZH, Evans R, Southerton SG. 2010. Fasciclin-like arabinogalactan proteins: specialization for stem biomechanics and cell wall architecture in Arabidopsis and Eucalyptus. Plant Journal 62: 689703.
  • Maggio A, Zhu JK, Hasegawa PM, Bressan RA. 2006. Osmogenetics: Aristotle to Arabidopsis. Plant Cell 18: 15421557.
  • Munns R, Tester M. 2008. Mechanisms of salinity tolerance. Annual Review of Plant Biology 59: 651681.
  • Nicholas KB, Nicholas HB Jr, Deerfield DWI. 1997. GeneDoc: analysis and visualization of genetic variation. EMBnet.news 4: 14.
  • Ohashi-Ito K, Fukuda H. 2010. Transcriptional regulation of vascular cell fates. Current Opinion in Plant Biology 13: 670676.
  • Ottow EA, Polle A, Brosche M, Kangasjarvi J, Dibrov P, Zorb C, Teichmann T. 2005. Molecular characterization of PeNhaD1: the first member of the NhaD Na+/H+ antiporter family of plant origin. Plant Molecular Biology 58: 7588.
  • Page RDM. 1996. TreeView: an application to display phylogenetic trees on personal computers. Computer Applications in the Biosciences 12: 357358.
  • Persson S, Wei HR, Milne J, Page GP, Somerville CR. 2005. Identification of genes required for cellulose synthesis by regression analysis of public microarray data sets. Proceedings of the National Academy of Sciences, USA 102: 86338638.
  • Pfaffl MW. 2001. A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Research 29: e45.
  • Pfaffl MW, Horgan GW, Dempfle L. 2002. Relative expression software tool (REST©) for group-wise comparison and statistical analysis of relative expression results in real-time PCR. Nucleic Acids Research 30: e36.
  • Plomion C, Pionneau C, Brach J, Costa P, Bailleres H. 2000. Compression wood-responsive proteins in developing xylem of maritime pine (Pinus pinaster Ait.). Plant Physiology 123: 959969.
  • Qin YM, Hu CY, Pang Y, Kastaniotis AJ, Hiltunen JK, Zhu YX. 2007. Saturated very-long-chain fatty acids promote cotton fiber and Arabidopsis cell elongation by activating ethylene biosynthesis. Plant Cell 19: 36923704.
  • Qiu Q, Ma T, Hu QJ, Liu BB, Wu YX, Zhou HH, Wang Q, Wang J, Liu JQ. 2011. Genome-scale transcriptome analysis of the desert poplar, Populus euphratica. Tree Physiology 31: 452461.
  • Rana R, Mueller G, Naumann A, Polle A. 2008. FTIR spectroscopy in combination with principal component analysis or cluster analysis as a tool to distinguish beech (Fagus sylvatica L.) trees grown at different sites. Holzforschung 62: 530538.
  • Rennenberg H, Schneider S, Weber P. 1996. Analysis of uptake and allocation of nitrogen and sulphur compounds by trees in the field. Journal of Experimental Botany 47: 14911498.
  • Rice-Evans CA, Miller J, Paganga G. 1997. Antioxidant properties of phenolic compounds. Trends in Plant Science 2: 152159.
  • Rutledge CB, Douglas GC. 1988. Culture of meristem tips and micropropagation of 12 commercial clones of poplar in vitro. Physiologia Plantarum 72: 367373.
  • Sato K, Suzuki R, Nishikubo N, Takenouchi S, Ito S, Nakano Y, Nakaba S, Sano Y, Funada R, Kajita S et al. 2010. Isolation of a novel cell wall architecture mutant of rice with defective Arabidopsis COBL4 ortholog BC1 required for regulated deposition of secondary cell wall components. Planta 232: 257270.
  • Schreiber SG, Hacke UG, Hamann A, Thomas BR. 2011. Genetic variation of hydraulic and wood anatomical traits in hybrid poplar and trembling aspen. New Phytologist 190: 150160.
  • Seifert GJ, Blaukopf C. 2010. Irritable walls: the plant extracellular matrix and signaling. Plant Physiology 153: 467478.
  • Shi HZ, Kim Y, Guo Y, Stevenson B, Zhu JK. 2003. The Arabidopsis SOS5 locus encodes a putative cell surface adhesion protein and is required for normal cell expansion. Plant Cell 15: 1932.
  • Sjödin A, Street NR, Sandberg G, Gustafsson P, Jansson S. 2009. The Populus Genome Integrative Explorer (PopGenIE): a new resource for exploring the Populus genome. New Phytologist 182: 10131025.
  • Sperry JS, Meinzer FC, McCulloh KA. 2008. Safety and efficiency conflicts in hydraulic architecture: scaling from tissues to trees. Plant, Cell & Environment 31: 632645.
  • Street NR, Skogstrom O, Sjodin A, Tucker J, Rodriguez-Acosta M, Nilsson P, Jansson S, Taylor G. 2006. The genetics and genomics of the drought response in Populus. Plant Journal 48: 321341.
  • Teichmann T, Bolu-Arianto WH, Olbrich A, Langenfeld-Heyser R, Gobel C, Grzeganek P, Feussner I, Hansch R, Polle A. 2008. GH3 :: GUS reflects cell-specific developmental patterns and stress-induced changes in wood anatomy in the poplar stem. Tree Physiology 28: 13051315.
  • Timell TE. 1986. Compression wood in gymnosperms. Berlin, Germany: Springer.
  • Truernit E, Siemering KR, Hodge S, Grbic V, Haseloff J. 2006. A map of KNAT gene expression in the Arabidopsis root. Plant Molecular Biology 60: 120.
  • Tusher VG, Tibshirani R, Chu G. 2001. Significance analysis of microarrays applied to the ionizing radiation response. Proceedings of the National Academy of Sciences, USA 98: 51165121.
  • Tyree MT, Ewers FW. 1991. The hydraulic architecture of trees and other woody plants. New Phytologist 119: 345360.
  • Ward JH. 1963. Hierarchical grouping to optimize an objective function. Journal of the American Statistical Association 58: 236.
  • Wind C, Arend M, Fromm J. 2004. Potassium-dependent cambial growth in poplar. Plant Biology 6: 3037.
  • Yeh TF, Braun JL, Goldfarb B, Chang HM, Kadla JF. 2006. Morphological and chemical variations between juvenile wood, mature wood, and compression wood of loblolly pine (Pinus taeda L.). Holzforschung 60: 18.
  • Zhang Y, Sederoff RR, Allona I. 2000. Differential expression of genes encoding cell wall proteins in vascular tissues from vertical and bent loblolly pine trees. Tree Physiology 20: 457466.
  • Zhou GW, Taylor G, Polle A. 2011. FTIR-ATR-based prediction and modelling of lignin and energy contents reveals independent intra-specific variation of these traits in bioenergy poplars. Plant Methods 7: 9.
  • Zimmermann MH. 1983. Xylem structure and the ascent of sap. Berlin, Heidelberg, New York, Tokyo: Springer Verlag.