These authors contributed equally to this work.
Plant genes involved in harbouring symbiotic rhizobia or pathogenic nematodes
Article first published online: 23 FEB 2012
© 2012 The Authors. New Phytologist © 2012 New Phytologist Trust
Volume 194, Issue 2, pages 511–522, April 2012
How to Cite
Damiani, I., Baldacci-Cresp, F., Hopkins, J., Andrio, E., Balzergue, S., Lecomte, P., Puppo, A., Abad, P., Favery, B. and Hérouart, D. (2012), Plant genes involved in harbouring symbiotic rhizobia or pathogenic nematodes. New Phytologist, 194: 511–522. doi: 10.1111/j.1469-8137.2011.04046.x
- Issue published online: 19 MAR 2012
- Article first published online: 23 FEB 2012
- Received: 13 October 2011, Accepted: 18 December 2011
Fig. S1 Laser microdissection of infected root tissues.
Fig. S2 MapMan representation of deregulated genes belonging to the ‘Mitochondrial electron transport’ functional category, using the mapping ‘Mt_AFFY_Mt3.0_0510.m02’.
Fig. S3 Number of probe sets deregulated in giant cells and surrounding cells classified into subcategories of the BIN class ‘Protein’ from the mapping ‘Mt_AFFY_Mt3.0_0510.m02’.
Table S1 Percentage of genes detected as expressed in Affymetrix gene chips
Table S2 Pearson correlation between biological replicates
Table S3 List of primers used for microarray validation by real-time PCR and promoter:GUS constructs
Table S4 List of statistically differentially expressed probe sets in at least one of our comparisons after Bonferroni correction (P < 0.05)
Table S5 List of nodule marker genes
Table S6 List of genes, possessing an orthologous gene in Arabidopsis, statistically differentially expressed in giant cells (GCs) and/or surrounding cells (SC) vs control cells from Medicago galls at 7-d post-infection relative to GC at 3 dpi from Arabidopsis (Barcala et al., 2010)
Table S7 Comparison between nodule zone II cells and whole-nodule transcriptomic data
Table S8 Nodule zone II cell-only deregulated processes
Table S9 List of deregulated probe sets coding for nodule-specific cysteine rich (NCR) or nodulins in nodule zone II cells, nodules at 10, 14 and 28 d post-infection
Table S10 Legume-specific genes deregulated in our analysis
Table S11 Differentially expressed transcription factor genes in our microarray experiments
Table S12 List of probe sets related to hormone metabolism and signalling deregulated in nodule zone II cells, giant cells and/or surrounding cells
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