These authors contributed equally to this work.
Comparative transcriptome analysis of transporters, phytohormone and lipid metabolism pathways in response to arsenic stress in rice (Oryza sativa)
Version of Record online: 27 APR 2012
© 2012 The Authors. New Phytologist © 2012 New Phytologist Trust
Volume 195, Issue 1, pages 97–112, July 2012
How to Cite
Yu, L.-j., Luo, Y.-f., Liao, B., Xie, L.-j., Chen, L., Xiao, S., Li, J.-t., Hu, S.-n. and Shu, W.-s. (2012), Comparative transcriptome analysis of transporters, phytohormone and lipid metabolism pathways in response to arsenic stress in rice (Oryza sativa). New Phytologist, 195: 97–112. doi: 10.1111/j.1469-8137.2012.04154.x
- Issue online: 24 MAY 2012
- Version of Record online: 27 APR 2012
- Received: 6 February 2012, Accepted: 14 March 2012
Fig. S1 Schematic representation of the experimental procedure for transcriptome profiling of the rice response to As(III).
Fig. S2 Arsenic content in rice after As(III) treatment.
Fig. S3 Global patterns of 10 samples of gene expression.
Fig. S4 Number of differentially expressed genes (DEGs) modulated in response to As(III) treatments of varying times and dosages.
Fig. S5 Comparison of Illumina sequencing data and qRT-PCR results.
Table S1 List of primers used for qRT-PCR analysis
Table S2 Summary of mapping reads of the mRNA-seq
Table S3 List of 2081 differentially expressed genes (DEGs) both root and shoot samples
Table S4 List of differentially expressed genes (DEGs) encoding As transporter proteins
Table S5 KEGG pathways enriched in differentially expressed genes (DEGs)
Table S6 List of differentially expressed genes (DEGs) in JA biosynthesis and signaling pathways.
Table S7 List of differentially expressed genes (DEGs) in phytohormone biosynthesis and signaling pathways
Table S8 List of differentially expressed genes (DEGs) in lipid metabolism
Table S9 Summary of mapping reads of the miRNA-seq
Table S10 Expression profiling of miRNA and their target mRNA
Table S11 List of differentially expressed genes (DEGs) encoding rice transcription factors (TFs)
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