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  • Agarwal M , Hao Y , Kapoor A , Dong CH , Fujii H , Zheng X , Zhu JK . 2006 . A R2R3 type MYB transcription factor is involved in the cold regulation of CBF genes and in acquired freezing tolerance . Journal of Biological Chemistry 281 : 3763637645 .
  • Allen DJ , Ort DR . 2001 . Impacts of chilling temperatures on photosynthesis in warm-climate plants . Trends in Plant Science 6 : 3642 .
  • Bäckström S , Elfving N , Nilsson R , Wingsle G , Björklund S . 2007 . Purification of a plant mediator from Arabidopsis thaliana identifies PFT1 as the Med25 subunit . Molecular Cell 26 : 717729 .
  • Badawi M , Danyluk J , Boucho B , Houde M , Sarhan F . 2007 . The CBF gene family in hexaploid wheat and its relationship to the phylogenetic complexity of cereal CBFs . Molecular Genetics and Genomics 277 : 533554 .
  • Baker SS , Wilhelm KS , Thomashow MF . 1994 . The 5′-region of Arabidopsis thaliana cor15a has cis-acting elements that confer cold-, drought- and ABA-regulated gene expression . Plant Molecular Biology 24 : 701713 .
  • Bali R , Savino L , Ramirez DA , Tsvetkova NM , Bagatolli L , Tablin F , Crowe JH , Leidy C . 2009 . Macroscopic domain formation during cooling in the platelet plasma membrane: an issue of low cholesterol content . Biochimica et Biophysica Acta 1788 : 12291237 .
  • Batistic O , Waadt R , Steinhorst L , Held K , Kudla J . 2010 . CBL-mediated targeting of CIPKs facilitates the decoding of calcium signals emanating from distinct cellular stores . Plant Journal 61 : 211222 .
  • Berberich T , Harada M , Sugawara K , Kodama H , Iba K , Kusano T . 1998 . Two maize genes encoding omega-3 fatty acid desaturase and their differential expression to temperature . Plant Molecular Biology 36 : 297306 .
  • Bieniawska Z , Espinoza C , Schlereth A , Sulpice R , Hincha DK , Hannah MA . 2008 . Disruption of the Arabidopsis circadian clock is responsible for extensive variation in the cold-responsive transcriptome . Plant Physiology 147 : 263279 .
  • Boyce JM , Knight H , Deyholos M , Openshaw MR , Galbraith DW , Warren G , Knight MR . 2003 . The sfr6 mutant of Arabidopsis is defective in transcriptional activation via CBF/DREB1 and DREB2 and shows sensitivity to osmotic stress . Plant Journal 34 : 395406 .
  • Carpaneto A , Ivashikina N , Levchenko V , Krol E , Jeworutzki E , Zhu JK , Hedrich R . 2007 . Cold transiently activates calcium-permeable channels in Arabidopsis mesophyll cells . Plant Physiology 143 : 487494 .
  • Carvallo MA , Pino MT , Jeknic Z , Zou C , Doherty CJ , Shiu SH , Chen TH , Thomashow MF . 2011 . A comparison of the low temperature transcriptomes and CBF regulons of three plant species that differ in freezing tolerance: Solanum commersonii, Solanum tuberosum, and Arabidopsis thaliana . Journal of Experimental Botany 62 : 38073819 .
  • Catalá R , Santos E , Alonso JM , Ecker JR , Martínez-Zapater JM , Salinas J . 2003 . Mutations in the Ca2+/H+ transporter CAX1 increase CBF/DREB1 expression and the cold-acclimation response in Arabidopsis . The Plant Cell 15 : 29402951 .
  • Chen W , Provart NJ , Glazebrook J , Katagiri F , Chang HS , Eulgem T , Mauch F , Luan S , Zou G , Whitham SA et al. 2002 . Expression profile matrix of Arabidopsis transcription factor genes suggests their putative functions in response to environmental stresses . The Plant Cell 14 : 559574 .
  • Chinnusamy V , Ohta M , Kanrar S , Lee BH , Hong X , Agarwal M , Zhu JK . 2003 . ICE1: a regulator of cold-induced transcriptome and freezing tolerance in Arabidopsis . Genes & Development 17 : 10431054 .
  • Choi HI , Park HJ , Park JH , Kim S , Im MY , Seo HH , Kim YW , Hwang I , Kim SY . 2005 . Arabidopsis calcium-dependent protein kinase AtCPK32 interacts with ABF4, a transcriptional regulator of abscisic acid-responsive gene expression, and modulates its activity . Plant Physiology 139 : 17501761 .
  • Conaway RC , Conaway JW . 2011 . Origins and activity of the Mediator complex . Seminars in Cell & Developmental Biology 22 : 729734 .
  • Cook D , Fowler S , Fiehn O , Thomashow MF . 2004 . A prominent role for the CBF cold response pathway in configuring the low-temperature metabolome of Arabidopsis . Proceedings of the National Academy of Sciences, USA 101 : 1524315248 .
  • Covington MF , Maloof JN , Straume M , Kay SA , Harmer SL . 2008 . Global transcriptome analysis reveals circadian regulation of key pathways in plant growth and development . Genome Biology 9 : R130 .
  • De Koninck P , Schulman H . 1998 . Sensitivity of CaM kinase II to the frequency of Ca2+ oscillations . Science 279 : 227230 .
  • Ding JP , Pickard BG . 1993 . Modulation of mechanosensitive calcium-selective cation channels by temperature . Plant Journal 3 : 713720 .
  • Dodd AN , Jakobsen MK , Baker AJ , Telzerow A , Hou SW , Laplaze L , Barrot L , Poethig RS , Haseloff J , Webb AA . 2006 . Time of day modulates low-temperature Ca signals in Arabidopsis . Plant Journal 48 : 962973 .
  • Doherty CJ , Van Buskirk HA , Myers SJ , Thomashow MF . 2009 . Roles for Arabidopsis CAMTA transcription factors in cold-regulated gene expression and freezing tolerance . The Plant Cell 21 : 972984 .
  • Dong CH , Agarwal M , Zhang Y , Xie Q , Zhu JK . 2006 . The negative regulator of plant cold responses, HOS1, is a RING E3 ligase that mediates the ubiquitination and degradation of ICE1 . Proceedings of the National Academy of Sciences, USA 103 : 82818286 .
  • Dong MA , Farre EM , Thomashow MF . 2011 . Circadian clock-associated 1 and late elongated hypocotyl regulate expression of the C-repeat binding factor (CBF) pathway in Arabidopsis . Proceedings of the National Academy of Sciences, USA 108 : 72417246 .
  • Dutilleul C , Benhassaine-Kesri G , Demandre C , Reze N , Launay A , Pelletier S , Renou JP , Zachowski A , Baudouin E , Guillas I . 2012 . Phytosphingosine-phosphate is a signal for AtMPK6 activation and Arabidopsis response to chilling . New Phytologist 194 : 181191 .
  • El Kayal W , Navarro M , Marque G , Keller G , Marque C , Teulieres C . 2006 . Expression profile of CBF-like transcriptional factor genes from Eucalyptus in response to cold . Journal of Experimental Botany 57 : 24552469 .
  • Fowler SG , Cook D , Thomashow MF . 2005 . Low temperature induction of Arabidopsis CBF1, 2, and 3 is gated by the circadian clock . Plant Physiology 137 : 961968 .
  • Fowler S , Thomashow MF . 2002 . Arabidopsis transcriptome profiling indicates that multiple regulatory pathways are activated during cold acclimation in addition to the CBF cold response pathway . The Plant Cell 14 : 16751690 .
  • Franklin KA , Whitelam GC . 2007 . Light-quality regulation of freezing tolerance in Arabidopsis thaliana . Nature Genetics 39 : 14101413 .
  • Gibson S , Arondel V , Iba K , Somerville C . 1994 . Cloning of a temperature-regulated gene encoding a chloroplast omega-3 desaturase from Arabidopsis thaliana . Plant Physiology 106 : 16151621 .
  • Gilmour SJ , Fowler SG , Thomashow MF . 2004 . Arabidopsis transcriptional activators CBF1, CBF2, and CBF3 have matching functional activities . Plant Molecular Biology 54 : 767781 .
  • Gilmour SJ , Hajela RK , Thomashow MF . 1988 . Cold acclimation of Arabidopsis thaliana . Plant Physiology 87 : 745750 .
  • Gilmour SJ , Sebolt AM , Salazar MP , Everard JD , Thomashow MF . 2000 . Overexpression of the Arabidopsis CBF3 transcriptional activator mimics multiple biochemical changes associated with cold acclimation . Plant Physiology 124 : 18541865 .
  • Gilmour SJ , Thomashow MF . 1991 . Cold acclimation and cold-regulated gene expression in ABA mutants of Arabidopsis thaliana . Plant Molecular Biology 17 : 12331240 .
  • Gilmour SJ , Zarka DG , Stockinger EJ , Salazar MP , Houghton JM , Thomashow MF . 1998 . Low temperature regulation of the Arabidopsis CBF family of AP2 transcriptional activators as an early step in cold-induced COR gene expression . Plant Journal 16 : 433443 .
  • Gulick PJ , Drouin S , Yu Z , Danyluk J , Poisson G , Monroy AF , Sarhan F . 2005 . Transcriptome comparison of winter and spring wheat responding to low temperature . Genome 48 : 913923 .
  • Guy CL , Haskell D . 1987 . Induction of freezing tolerance in spinach is associated with the synthesis of cold acclimation induced proteins . Plant Physiology 84 : 872878 .
  • Guy C , Kaplan F , Kopka J , Selbig J , Hincha DK . 2008 . Metabolomics of temperature stress . Physiologia Plantarum 132 : 220235 .
  • Haake V , Cook D , Riechmann JL , Pineda O , Thomashow MF , Zhang JZ . 2002 . Transcription factor CBF4 is a regulator of drought adaptation in Arabidopsis . Plant Physiology 130 : 639648 .
  • Han SC , Tang RH , Anderson LK , Woerner TE , Pei ZM . 2003 . A cell surface receptor mediates extracellular Ca2+ sensing in guard cells . Nature 425 : 196200 .
  • Hannah MA , Heyer AG , Hincha DK . 2005 . A global survey of gene regulation during cold acclimation in Arabidopsis thaliana . PLoS Genetics 1 : e26 .
  • Harmer SL , Hogenesch JB , Straume M , Chang HS , Han B , Zhu T , Wang X , Kreps JA , Kay SA . 2000 . Orchestrated transcription of key pathways in Arabidopsis by the circadian clock . Science 290 : 21102113 .
  • Hsieh TH , Lee JT , Yang PT , Chiu LH , Charng YY , Wang YC , Chan MT . 2002 . Heterology expression of the Arabidopsis C-repeat/dehydration response element binding factor 1 gene confers elevated tolerance to chilling and oxidative stresses in transgenic tomato . Plant Physiology 129 : 10861094 .
  • Ishitani M , Xiong L , Lee H , Stevenson B , Zhu JK . 1998 . HOS1, a genetic locus involved in cold-responsive gene expression in Arabidopsis . The Plant Cell 10 : 11511161 .
  • Ito Y , Katsura K , Maruyama K , Taji T , Kobayashi M , Seki M , Shinozaki K , Yamaguchi-Shinozaki K . 2006 . Functional analysis of rice DREB1/CBF-type transcription factors involved in cold-responsive gene expression in transgenic rice . Plant and Cell Physiology 47 : 141153 .
  • Jaglo KR , Kleff S , Amundsen KL , Zhang X , Haake V , Zhang JZ , Deits T , Thomashow MF . 2001 . Components of the Arabidopsis C-repeat/dehydration-responsive element binding factor cold-response pathway are conserved in Brassica napus and other plant species . Plant Physiology 127 : 910917 .
  • Jaglo-Ottosen KR , Gilmour SJ , Zarka DG , Schabenberger O , Thomashow MF . 1998 . Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance . Science 280 : 104106 .
  • James AB , Syed NH , Bordage S , Marshall J , Nimmo GA , Jenkins GI , Herzyk P , Brown JW , Nimmo HG . 2012 . Alternative splicing mediates responses of the Arabidopsis circadian clock to temperature changes . The Plant Cell 24 : 961981 .
  • Jeon J , Kim J . 2011 . FVE, an Arabidopsis homologue of the retinoblastoma-associated protein that regulates flowering time and cold response, binds to chromatin as a large multiprotein complex . Molecules and Cells 32 : 227234 .
  • Jin JB , Jin YH , Lee J , Miura K , Yoo CY , Kim WY , Van Oosten M , Hyun Y , Somers DE , Lee I et al. 2008 . The SUMO E3 ligase, AtSIZ1, regulates flowering by controlling a salicylic acid-mediated floral promotion pathway and through effects on FLC chromatin structure . Plant Journal 53 : 530540 .
  • Karashima Y , Talavera K , Everaerts W , Janssens A , Kwan KY , Vennekens R , Nilius B , Voets T . 2009 . TRPA1 acts as a cold sensor in vitro and in vivo . Proceedings of the National Academy of Sciences, USA 106 : 12731278 .
  • Kendall SL , Hellwege A , Marriot P , Whalley C , Graham IA , Penfield S . 2011 . Induction of dormancy in Arabidopsis summer annuals requires parallel regulation of DOG1 and hormone metabolism by low temperature and CBF transcription factors . The Plant Cell 23 : 25682580 .
  • Kidokoro S , Maruyama K , Nakashima K , Imura Y , Narusaka Y , Shinwari ZK , Osakabe Y , Fujita Y , Mizoi J , Shinozaki K et al. 2009 . The phytochrome-interacting factor PIF7 negatively regulates DREB1 expression under circadian control in Arabidopsis . Plant Physiology 151 : 20462057 .
  • Kilian J , Whitehead D , Horak J , Wanke D , Weinl S , Batistic O , D’Angelo C , Bornberg-Bauer E , Kudla J , Harter K . 2007 . The AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses . Plant Journal 50 : 347363 .
  • Kim HJ , Hyun Y , Park JY , Park MJ , Park MK , Kim MD , Lee MH , Moon J , Lee I , Kim J . 2004 . A genetic link between cold responses and flowering time through FVE in Arabidopsis thaliana . Nature Genetics 36 : 167171 .
  • Kim HJ , Kim YK , Park JY , Kim J . 2002 . Light signalling mediated by phytochrome plays an important role in cold-induced gene expression through the C-repeat/dehydration responsive element (C/DRE) in Arabidopsis thaliana . Plant Journal 29 : 693704 .
  • Kim KN , Cheong YH , Grant JJ , Pandey GK , Luan S . 2003 . CIPK3, a calcium sensor-associated protein kinase that regulates abscisic acid and cold signal transduction in Arabidopsis . The Plant Cell 15 : 411423 .
  • Knight H , Brandt S , Knight MR . 1998 . A history of stress alters drought calcium signalling pathways in Arabidopsis . Plant Journal 16 : 681687 .
  • Knight H , Knight MR . 2000 . Imaging spatial and cellular characteristics of low temperature calcium signature after cold acclimation in Arabidopsis . Journal of Experimental Botany 51 : 16791686 .
  • Knight H , Mugford SG , Ulker B , Gao D , Thorlby G , Knight MR . 2009 . Identification of SFR6, a key component in cold acclimation acting post-translationally on CBF function . Plant Journal 58 : 97108 .
  • Knight H , Trewavas AJ , Knight MR . 1996 . Cold calcium signaling in Arabidopsis involves two cellular pools and a change in calcium signature after acclimation . The Plant Cell 8 : 489503 .
  • Knight H , Veale E , Warren GJ , Knight MR . 1999 . The sfr6 mutation in Arabidopsis suppresses low-temperature induction of genes dependent on the CRT/DRE sequence motif . The Plant Cell 11 : 875886 .
  • Knight H , Zarka DG , Okamoto H , Thomashow MF , Knight MR . 2004 . Abscisic acid induces CBF gene transcription and subsequent induction of cold-regulated genes via the CRT promoter element . Plant Physiology 135 : 17101717 .
  • Knight MR , Campbell AK , Smith SM , Trewavas AJ . 1991 . Transgenic plant aequorin reports the effects of touch and cold-shock and elicitors on cytoplasmic calcium . Nature 352 : 524526 .
  • Kornberg RD . 2005 . Mediator and the mechanism of transcriptional activation . Trends in Biochemical Sciences 30 : 235239 .
  • Kreps J , Budworth P , Goff S , Wang R . 2003 . Identification of putative plant cold responsive regulatory elements by gene expression profiling and a pattern enumeration algorithm . Plant Biotechnology Journal 1 : 345352 .
  • Kumar SV , Lucyshyn D , Jaeger KE , Alos E , Alvey E , Harberd NP , Wigge PA . 2012 . Transcription factor PIF4 controls the thermosensory activation of flowering . Nature 484 : 242245 .
  • Kumar SV , Wigge PA . 2010 . H2A.Z-containing nucleosomes mediate the thermosensory response in Arabidopsis . Cell 140 : 136147 .
  • Lång V , Mäntylä E , Welin B , Sundberg B , Palva ET . 1994 . Alterations in water status, endogenous abscisic acid content, and expression of rab18 gene during the development of freezing tolerance in Arabidopsis thaliana . Plant Physiology 104 : 13411349 .
  • Larkindale J , Knight MR . 2002 . Protection against heat stress-induced oxidative damage in Arabidopsis involves calcium, abscisic acid, ethylene, and salicylic acid . Plant Physiology 128 : 682695 .
  • Lazaro A , Valverde F , Pineiro M , Jarillo JA . 2012 . The Arabidopsis E3 ubiquitin ligase HOS1 negatively regulates CONSTANS abundance in the photoperiodic control of flowering . The Plant Cell 24 : 982999 .
  • Levitt J . 1980 . Responses of plants to environmental stress. Chilling, freezing, and high temperature stresses . New York, NY, USA : Academic Press .
  • Lewis BD , Karlin-Neumann G , Davis RW , Spalding EP . 1997 . Ca2+-activated anion channels and membrane depolarizations induced by blue light and cold in Arabidopsis seedlings . Plant Physiology 114 : 13271334 .
  • Li Y , Bjorklund S , Jiang YW , Kim YJ , Lane WS , Stillman DJ , Kornberg RD . 1995 . Yeast global transcriptional regulators Sin4 and Rgr1 are components of mediator complex/RNA polymerase II holoenzyme . Proceedings of the National Academy of Sciences, USA 92 : 1086410868 .
  • Liu HH , Tian X , Li YJ , Wu CA , Zheng CC . 2008 . Microarray-based analysis of stress-regulated microRNAs in Arabidopsis thaliana . RNA 14 : 836843 .
  • Liu Q , Kasuga M , Sakuma Y , Abe H , Miura S , Yamaguchi-Shinozaki Y , Shinozaki K . 1998 . Two transcription factors, DREB1 and DREB2, with an EREBP/AP2 DNA binding domain separate two cellular signal transduction pathways in drought- and low-temperature-responsive gene expression, respectively, in Arabidopsis . The Plant Cell 10 : 13911406 .
  • Los DA , Murata N . 2000 . Regulation of enzymatic activity and gene expression by membrane fluidity . Science’s STKE 2000 : pe1 .
  • Ludwig AA , Romeis T , Jones JDG . 2004 . CDPK-mediated signalling pathways: specificity and cross-talk . Journal of Experimental Botany 55 : 181188 .
  • Lv DK , Bai X , Li Y , Ding XD , Ge Y , Cai H , Ji W , Wu N , Zhu YM . 2010 . Profiling of cold-stress-responsive miRNAs in rice by microarrays . Gene 459 : 3947 .
  • Mantyla E , Lang V , Palva ET . 1995 . Role of abscisic acid in drought-induced freezing tolerance, cold acclimation, and accumulation of LT178 and RAB18 proteins in Arabidopsis thaliana . Plant Physiology 107 : 141148 .
  • Marquez Y , Brown JW , Simpson C , Barta A , Kalyna M . 2012 . Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis . Genome Research 22 : 11841195 .
  • Martinière A , Shvedunova M , Thomson AJ , Evans NH , Penfield S , Runions J , McWatters HG . 2011 . Homeostasis of plasma membrane viscosity in fluctuating temperatures . New Phytologist 192 : 328337 .
  • Matteucci M , D’Angeli S , Errico S , Lamanna R , Perrotta G , Altamura MM . 2011 . Cold affects the transcription of fatty acid desaturases and oil quality in the fruit of Olea europaea L. genotypes with different cold hardiness . Journal of Experimental Botany 62 : 34033420 .
  • Mazars C , Thion L , Thuleau P , Graziana A , Knight MR , Moreau M , Ranjeva R . 1997 . Organization of cytoskeleton controls the changes in cytosolic calcium of cold-shocked Nicotiana plumbaginifolia protoplasts . Cell Calcium 22 : 413420 .
  • Medina J , Bargues M , Terol J , Perez-Alonso M , Salinas J . 1999 . The Arabidopsis CBF gene family is composed of three genes encoding AP2 domain-containing proteins whose expression is regulated by low temperature but not by abscisic acid or dehydration . Plant Physiology 119 : 463470 .
  • Mehlmer N , Wurzinger B , Stael S , Hofmann-Rodrigues D , Csaszar E , Pfister B , Bayer R , Teige M . 2010 . The Ca2+-dependent protein kinase CPK3 is required for MAPK-independent salt-stress acclimation in Arabidopsis . Plant Journal 63 : 484498 .
  • Meza-Basso L , Alberdi M , Raynal M , Ferrero-Cadinanos ML , Delseny M . 1986 . Changes in protein synthesis in rapeseed (Brassica napus) seedlings during a low temperature treatment . Plant Physiology 82 : 733738 .
  • Mikami K , Kanesaki Y , Suzuki I , Murata N . 2002 . The histidine kinase Hik33 perceives osmotic stress and cold stress in Synechocystis sp PCC 6803 . Molecular Microbiology 46 : 905915 .
  • Mikkelsen MD , Thomashow MF . 2009 . A role for circadian evening elements in cold-regulated gene expression in Arabidopsis . Plant Journal 60 : 328339 .
  • Minorsky PV , Spanswick RM . 1989 . Electrophysiological evidence for a role for calcium in temperature sensing by roots of cucumber seedlings . Plant, Cell and Environment 12 : 137143 .
  • Miura K , Jin JB , Lee J , Yoo CY , Stirm V , Miura T , Ashworth EN , Bressan RA , Yun DJ , Hasegawa PM . 2007 . SIZ1-mediated sumoylation of ICE1 controls CBF3/DREB1A expression and freezing tolerance in Arabidopsis . The Plant Cell 19 : 14031414 .
  • Mohapatra SS , Poole RJ , Dhindsa RS . 1987 . Changes in protein patterns and translatable messenger RNA populations during cold acclimation of alfalfa . Plant Physiology 84 : 11721176 .
  • Monroy AF , Sangwan V , Dhindsa RS . 1998 . Low temperature signal transduction during cold acclimation: protein phosphatase 2A as an early target for cold-inactivation . Plant Journal 13 : 653660 .
  • Monroy AF , Sarhan F , Dhindsa RS . 1993 . Cold-induced changes in freezing tolerance, protein phosphorylation, and gene expression (evidence for a role of calcium) . Plant Physiology 102 : 12271235 .
  • Murata N , Los DA . 1997 . Membrane fluidity and temperature perception . Plant Physiology 115 : 875879 .
  • Narsai R , Castleden I , Whelan J . 2010 . Common and distinct organ and stress responsive transcriptomic patterns in Oryza sativa and Arabidopsis thaliana . BMC Plant Biology 10 : 262 .
  • Narusaka Y , Nakashima K , Shinwari ZK , Sakuma Y , Furihata T , Abe H , Narusaka M , Shinozaki K , Yamaguchi-Shinozaki K . 2003 . Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis RD29A gene in response to dehydration and high-salinity stresses . Plant Journal 34 : 137148 .
  • Nilsson-Leissner G . 1929 . Death from low temperature and resistance of plants to cold . Quarterly Review of Biology 4 : 113117 .
  • Nishida I , Murata N . 1996 . Chilling sensitivity in plants and cyanobacteria: the crucial contribution of membrane lipids . Annual Review of Plant Physiology and Plant Molecular Biology 47 : 541568 .
  • Novillo F , Alonso JM , Ecker JR , Salinas J . 2004 . CBF2/DREB1C is a negative regulator of CBF1/DREB1B and CBF3/DREB1A expression and plays a central role in stress tolerance in Arabidopsis . Proceedings of the National Academy of Sciences, USA 101 : 39853990 .
  • Novillo F , Medina J , Salinas J . 2007 . Arabidopsis CBF1 and CBF3 have a different function than CBF2 in cold acclimation and define different gene classes in the CBF regulon . Proceedings of the National Academy of Sciences, USA 104 : 2100221007 .
  • Orvar BL , Sangwan V , Omann F , Dhindsa RS . 2000 . Early steps in cold sensing by plant cells: the role of actin cytoskeleton and membrane fluidity . Plant Journal 23 : 785794 .
  • Palusa SG , Ali GS , Reddy AS . 2007 . Alternative splicing of pre-mRNAs of Arabidopsis serine/arginine-rich proteins: regulation by hormones and stresses . Plant Journal 49 : 10911107 .
  • Park HC , Kim H , Koo SC , Park HJ , Cheong MS , Hong H , Baek D , Chung WS , Kim DH , Bressan RA et al. 2010 . Functional characterization of the SIZ/PIAS-type SUMO E3 ligases, OsSIZ1 and OsSIZ2 in rice . Plant, Cell and Environment 33 : 19231934 .
  • Park HJ , Park HC , Lee SY , Bohnert HJ , Yun DJ . 2011 . Ubiquitin and ubiquitin-like modifiers in plants . Journal of Plant Biology 54 : 275285 .
  • Pavangadkar K , Thomashow MF , Triezenberg SJ . 2010 . Histone dynamics and roles of histone acetyltransferases during cold-induced gene regulation in Arabidopsis . Plant Molecular Biology 74 : 183200 .
  • Peier AM , Moqrich A , Hergarden AC , Reeve AJ , Andersson DA , Story GM , Earley TJ , Dragoni I , McIntyre P , Bevan S et al. 2002 . A TRP channel that senses cold stimuli and menthol . Cell 108 : 705715 .
  • Pennycooke JC , Cheng H , Roberts SM , Yang Q , Rhee SY , Stockinger EJ . 2008 . The low temperature-responsive, Solanum CBF1 genes maintain high identity in their upstream regions in a genomic environment undergoing gene duplications, deletions, and rearrangements . Plant Molecular Biology 67 : 483497 .
  • Plieth C . 1999 . Temperature sensing by plants: calcium-permeable channels as primary sensors – a model . Journal of Membrane Biology 172 : 121127 .
  • Plieth C , Hansen UP , Knight H , Knight MR . 1999 . Temperature sensing by plants: the primary characteristics of signal perception and calcium response . Plant Journal 18 : 491497 .
  • Pokorná J , Schwarzerová K , Zelenková S , Petrášek J , Janotová I , Apková V , Opatrny Z . 2004 . Sites of actin filament initiation and reorganization in cold-treated tobacco cells . Plant, Cell & Environment 27 : 641653 .
  • Polisensky DH , Braam J . 1996 . Cold-shock regulation of the Arabidopsis TCH genes and the effects of modulating intracellular calcium levels . Plant Physiology 111 : 12711279 .
  • Prasad TK , Anderson MD , Martin BA , Stewart CR . 1994 . Evidence for chilling-induced oxidative stress in maize seedlings and a regulatory role for hydrogen peroxide . The Plant Cell 6 : 6574 .
  • Provart NJ , Gil P , Chen W , Han B , Chang HS , Wang X , Zhu T . 2003 . Gene expression phenotypes of Arabidopsis associated with sensitivity to low temperatures . Plant Physiology 132 : 893906 .
  • Qin F , Sakuma Y , Li J , Liu Q , Li YQ , Shinozaki K , Yamaguchi-Shinozaki K . 2004 . Cloning and functional analysis of a novel DREB1/CBF transcription factor involved in cold-responsive gene expression in Zea mays L . Plant and Cell Physiology 45 : 10421052 .
  • Ranf S , Grimmer J , Poschl Y , Pecher P , Chinchilla D , Scheel D , Lee J . 2012 . Defense-related calcium signaling mutants uncovered via a quantitative high-throughput screen in Arabidopsis thaliana . Molecular Plant 5 : 115130 .
  • Robinson SJ , Parkin IA . 2008 . Differential SAGE analysis in Arabidopsis uncovers increased transcriptome complexity in response to low temperature . BMC Genomics 9 : 434 .
  • Saijo Y , Hata S , Kyozuka J , Shimamoto K , Izui K . 2000 . Over-expression of a single Ca2+-dependent protein kinase confers both cold and salt/drought tolerance on rice plants . Plant Journal 23 : 319327 .
  • Sakai A , Larcher W . 1987 . Frost survival of plants. Responses and adaptation to freezing stress . Ecological Studies 62 : 321 .
  • Sangwan V , Foulds I , Singh J , Dhindsa RS . 2001 . Cold activation of Brassica napus BN115 promter is mediated by structural changes in membranes and cytoskeleton and requires Ca2+ influx . Plant Journal 27 : 112 .
  • Sasaki K , Kim MH , Imai R . 2007 . Arabidopsis COLD SHOCK DOMAIN PROTEIN2 is a RNA chaperone that is regulated by cold and developmental signals . Biochemical and Biophysical Research Communications 364 : 633638 .
  • Scrase-Field SA , Knight MR . 2003 . Calcium: just a chemical switch? Current Opinion in Plant Biology 6 : 500506 .
  • Shan DP , Huang JG , Yang YT , Guo YH , Wu CA , Yang GD , Gao Z , Zheng CC . 2007 . Cotton GhDREB1 increases plant tolerance to low temperature and is negatively regulated by gibberellic acid . New Phytologist 176 : 7081 .
  • Sheen J . 1996 . Ca2+-dependent protein kinases and stress signal transduction in plants . Science 274 : 19001902 .
  • Shinozaki K , Yamaguchi-Shinozaki K . 1996 . Molecular responses to drought and cold stress . Current Opinion in Biotechnology 7 : 161167 .
  • Shinwari ZK , Nakashima K , Miura S , Kasuga M , Seki M , Yamaguchi-Shinozaki K , Shinozaki K . 1998 . An Arabidopsis gene family encoding DRE/CRT binding proteins involved in low-temperature-responsive gene expression . Biochemical and Biophysical Research Communications 250 : 161170 .
  • Stitt M , Hurry V . 2002 . A plant for all seasons: alterations in photosynthetic carbon metabolism during cold acclimation in Arabidopsis . Current Opinion in Plant Biology 5 : 199206 .
  • Stockinger EJ , Gilmour SJ , Thomashow MF . 1997 . Arabidopsis thaliana CBF1 encodes an AP2 domain-containing transcriptional activator that binds to the C-repeat/DRE, a cis-acting DNA regulatory element that stimulates transcription in response to low temperature and water deficit . Proceedings of the National Academy of Sciences, USA 94 : 10351040 .
  • Strahl BD , Allis CD . 2000 . The language of covalent histone modifications . Nature 403 : 4145 .
  • Strand A , Hurry V , Gustafsson P , Gardestrom P . 1997 . Development of Arabidopsis thaliana leaves at low temperatures releases the suppression of photosynthesis and photosynthetic gene expression despite the accumulation of soluble carbohydrates . Plant Journal 12 : 605614 .
  • Struhl K . 1998 . Histone acetylation and transcriptional regulatory mechanisms . Genes & Development 12 : 599606 .
  • Sung S , Amasino RM . 2005 . Remembering winter: toward a molecular understanding of vernalization . Annual Review of Plant Biology 56 : 491508 .
  • Sunkar R , Li YF , Jagadeeswaran G . 2012 . Functions of microRNAs in plant stress responses . Trends in Plant Science 17 : 196203 .
  • Sunkar R , Zhu JK . 2004 . Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis . The Plant Cell 16 : 20012019 .
  • Suzuki M , Ketterling MG , McCarty DR . 2005 . Quantitative statistical analysis of cis-regulatory sequences in ABA/VP1- and CBF/DREB1-regulated genes of Arabidopsis . Plant Physiology 139 : 437447 .
  • Tähtiharju S , Sangwan V , Monroy AF , Dhindsa RS , Borg M . 1997 . The induction of KIN genes in cold-acclimating Arabidopsis thaliana. Evidence of a role for calcium . Planta 203 : 442447 .
  • Teige M , Scheikl E , Eulgem T , Doczi R , Ichimura K , Shinozaki K , Dangl JL , Hirt H . 2004 . The MKK2 pathway mediates cold and salt stress signaling in Arabidopsis . Molecular Cell 15 : 141152 .
  • Thomashow MF . 1994 . Arabidopsis thaliana as a model for studying mechanisms of plant cold tolerance . In : Meyerowitz EM , Somerville CR , eds . Arabidopsis . New York, NY, USA : Cold Spring Harbor Laboratory Press , 807834 .
  • Thomashow MF . 1999 . Plant cold acclimation: freezing tolerance genes and regulatory mechanisms . Annual Review of Plant Physiology 50 : 571599 .
  • Townley HE , Knight MR . 2002 . Calmodulin as a potential negative regulator of Arabidopsis COR gene expression . Plant Physiology 128 : 11691172 .
  • Uemura M , Steponkus PL . 1989 . Effect of cold acclimation on the incidence of two forms of freezing injury in protoplasts isolated from rye leaves . Plant Physiology 91 : 11311137 .
  • Vlachonasios KE , Thomashow MF , Triezenberg SJ . 2003 . Disruption mutations of ADA2b and GCN5 transcriptional adaptor genes dramatically affect Arabidopsis growth, development, and gene expression . The Plant Cell 15 : 626638 .
  • Vogel JT , Zarka DG , Van Buskirk HA , Fowler SG , Thomashow MF . 2005 . Roles of the CBF2 and ZAT12 transcription factors in configuring the low temperature transcriptome of Arabidopsis . Plant Journal 41 : 195211 .
  • Warren G , McKown R , Marin A , Teutonico R . 1996 . Isolation of mutations affecting the development of freezing tolerance in Arabidopsis thaliana (L.) Heynh . Plant Physiology 111 : 10111019 .
  • Wathugala DL , Richards SA , Knight H , Knight MR . 2011 . OsSFR6 is a functional rice orthologue of SENSITIVE TO FREEZING-6 and can act as a regulator of COR gene expression, osmotic stress and freezing tolerance in Arabidopsis . New Phytologist 191 : 984995 .
  • Webb MS , Uemura M , Steponkus PL . 1994 . A comparison of freezing injury in oat and rye: two cereals at the extremes of freezing tolerance . Plant Physiology 104 : 467478 .
  • Weiser CJ . 1970 . Cold resistance and injury in woody plants: knowledge of hardy plant adaptations to freezing stress may help us to reduce winter damage . Science 169 : 12691278 .
  • Whalley HJ , Sargeant AW , Steele JF , Lacoere T , Lamb R , Saunders NJ , Knight H , Knight MR . 2011 . Transcriptomic analysis reveals calcium regulation of specific promoter motifs in Arabidopsis . The Plant Cell 23 : 40794095 .
  • White PJ . 2009 . Depolarization-activated calcium channels shape the calcium signatures induced by low-temperature stress . New Phytologist 183 : 68 .
  • Winfield MO , Lu C , Wilson ID , Coghill JA , Edwards KJ . 2009 . Cold- and light-induced changes in the transcriptome of wheat leading to phase transition from vegetative to reproductive growth . BMC Plant Biology 9 : 55 .
  • Winfield MO , Lu C , Wilson ID , Coghill JA , Edwards KJ . 2010 . Plant responses to cold: transcriptome analysis of wheat . Plant Biotechnology Journal 8 : 749771 .
  • Wurzinger B , Mair A , Pfister B , Teige M . 2011 . Cross-talk of calcium-dependent protein kinase and MAP kinase signaling . Plant Signal & Behavior 6 : 812 .
  • Xi J , Qiu YJ , Du LQ , Poovaiah BW . 2012 . Plant-specific trihelix transcription factor AtGT2L interacts with calcium/calmodulin and responds to cold and salt stresses . Plant Science 185 : 274280 .
  • Yamaguchi-Shinozaki K , Shinozaki K . 1994 . A novel cis-acting element in an Arabidopsis gene is involved in responsiveness to drought, low-temperature, or high-salt stress . The Plant Cell 6 : 251264 .
  • Yoshida S , Uemura M . 1984 . Protein and lipid compositions of isolated plasma membranes from orchard grass (Dactylis glomerata L.) and changes during cold acclimation . Plant Physiology 75 : 3137 .
  • Zarka DG , Vogel JT , Cook D , Thomashow MF . 2003 . Cold induction of Arabidopsis CBF genes involves multiple ICE (inducer of CBF expression) promoter elements and a cold-regulatory circuit that is desensitized by low temperature . Plant Physiology 133 : 910918 .
  • Zhang C , Guy CL . 2006 . In vitro evidence of Hsc70 functioning as a molecular chaperone during cold stress . Plant Physiology and Biochemistry 44 : 844850 .
  • Zhang J , Xu Y , Huan Q , Chong K . 2009 . Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response . BMC Genomics 10 : 449 .
  • Zhang X , Fowler SG , Cheng H , Lou Y , Rhee SY , Stockinger EJ , Thomashow MF . 2004 . Freezing-sensitive tomato has a functional CBF cold response pathway, but a CBF regulon that differs from that of freezing-tolerant Arabidopsis . Plant Journal 39 : 905919 .
  • Zhu J , Jeong JC , Zhu Y , Sokolchik I , Miyazaki S , Zhu JK , Hasegawa PM , Bohnert HJ , Shi H , Yun DJ et al. 2008 . Involvement of Arabidopsis HOS15 in histone deacetylation and cold tolerance . Proceedings of the National Academy of Sciences, USA 105 : 49454950 .