SEARCH

SEARCH BY CITATION

References

  • Abbott RJ. 1992. Plant invasions, interspecific hybridization and the evolution of new plant taxa. Trends in Ecology and Evolution 7: 401405.
  • Aizawa M, Yoshimaru H, Saito H, Katsuki T, Kawahara T, Kitamura K, Shi F, Kaji M. 2007. Phylogeography of a northeast Asian spruce, Picea jezoensis, inferred from genetic variation observed in organelle DNA markers. Molecular Ecology 16: 33933405.
  • Alsos IG, Alm T, Normand S, Brochmann C. 2009. Past and future range shifts and loss of diversity in dwarf willow (Salix herbacea L.) inferred from genetics, fossils and modelling. Global Ecology and Biogeography 18: 223239.
  • Avise JC, Nelson WS, Sugi H. 1994. A speciational history of “living fossils”: molecular evolutionary patterns in horseshoe crabs. Evolution 48: 19862001.
  • Axelrod DI, Al-Shehbaz I, Raven PH. 1998. History of the modern flora of China. In: Zhang AL, Wu SG, eds. Floristic characteristics and diversity of East Asian plants. Beijing, China: Higher Education Press; Berlin, Germany: Springer-Verlag, 4355.
  • Bean WJ. 1970. Trees & shrubs hardy in the British Isles. Vol. 1, 8th edn . London, UK: John Murray.
  • Carstens BC, Richards CL. 2007. Integrating coalescent and ecological niche modeling in comparative phylogeography. Evolution 61: 14391454.
  • Cerling TE, Harris JM, MacFadden BJ, Leakey MG, Quade J, Eisenmann V, Ehleringer JR. 1997. Global vegetation change through the Miocene/Pliocene boundary. Nature 389: 153158.
  • Chen C, Liu YH, Fu CX, Qiu YX. 2010. New microsatellite markers for the rare plant Cercidiphyllum japonicum and their utility for Cercidiphyllum magnificum. American Journal of Botany 97: e82e84.
  • Chung CH. 2007. Vegetation response to climate change on Jeju Island, South Korea, during the last deglaciation based on pollen record. Geosciences Journal 11: 147155.
  • Chen KM, Abbott RJ, Milne RI, Tian XM, Liu JQ. 2008. Phylogeography of Pinus tabulaeformis Carr. (Pinaceae), a dominant species of coniferous forest in northern China. Molecular Ecology 17: 42764288.
  • Clement M, Posada D, Crandall KA. 2000. TCS: a computer program to estimate gene genealogies. Molecular Ecology 9: 16571659.
  • Collins WD, Bitz CM, Blackmon ML, Bonan GB, Bretherton CS, Carton JA, Chang P, Doney SC, Hack JJ, Henderson TB et al. 2006. The Community Climate System Model version 3 (CCSM3). Journal of Climate 19: 21222143.
  • Comes HP, Abbott RJ. 2001. Molecular phylogeography, reticulation, and lineage sorting in Mediterranean Senecio sect. Senecio (Asteraceae). Evolution 55: 19431962.
  • Crane PR, Stockey RA. 1985. Growth and reproductive biology of Joffrea speirsii gen. et sp. nov., a Cercidiphyllum-like plant from the Late Paleocene of Alberta, Canada. Canadian Journal of Botany 63: 340364.
  • Currat M, Ruedi M, Petit RJ, Excoffier L. 2008. The hidden side of invasions: massive introgression by local genes. Evolution 62: 19081920.
  • Drummond A, Rambaut A. 2007. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evolutionary Biology 7: 214.
  • Drummond AJ, Ashton B, Cheung M, Heled J, Kearse M, Moir R, Stones-Havas S, Thierer T, Wilson A. 2009. Geneious v4. 8. [WWW document] URL http://www.geneious.com [accessed on 5 July 2010].
  • Drummond AJ, Nicholls GK, Rodrigo AG, Solomon W. 2002. Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data. Genetics 161: 13071320.
  • Du FK, Peng XL, Liu JQ, Lascoux M, Hu FS, Petit RJ. 2011. Direction and extent of organelle DNA introgression between two spruce species in the Qinghai-Tibetan Plateau. New Phytologist 192: 10241033.
  • Ellstrand NC, Schierenbeck K. 2000. Hybridization as a stimulus for the evolution of invasiveness in plants? Proceedings of the National Academy of Sciences, USA 97: 70437050.
  • Evanno G, Regnaut S, Goudet J. 2005. Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Molecular Ecology 14: 26112620.
  • Excoffier L, Foll M, Petit RJ. 2009. Genetic consequences of range expansions. Annual Review of Ecology, Evolution, and Systematics 40: 481501.
  • Excoffier L, Laval G, Schneider S. 2006. Arlequin ver. 3.1: an integrated software package for population genetics data analysis. Bern, Switzerland: Computational and Molecular Population Genetics Laboratory, Institute of Zoology, University of Bern.
  • Fishbein M, Hibsch-Jetter C, Soltis DE, Hufford L. 2001. Phylogeny of Saxifragales (angiosperms, eudicots): analysis of a rapid, ancient radiation. Systematic Biology 50: 817847.
  • Flint HL. 1997. Landscape plants for eastern North America, 2nd edn . New York, NY, USA: John Wiley and Sons.
  • Fu DZ, Endress PK. 2001. Cercidiphyllaceae. In: Wu ZY, Raven PH, eds. Flora of China, vol. 6. Beijing, China: Science Press; St. Louis, MO, USA: Missouri Botanical Garden Press, 126.
  • Fu YX. 1997. Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics 147: 915925.
  • Gao LM, Möller M, Zhang XM, Hollingsworth ML, Liu J, Mill RR, Gibby M, Li DZ. 2007. High variation and strong phylogeographic pattern among cpDNA haplotypes in Taxus wallichiana (Taxaceae) in China and North Vietnam. Molecular Ecology 16: 46844698.
  • Gong W, Chen C, Dobes C, Fu CX, Koch MA. 2008. Phylogeography of a living fossil: Pleistocene glaciations forced Ginkgo biloba L. (Ginkgoaceae) into two refuge areas in China with limited subsequent postglacial expansion. Molecular Phylogenetics and Evolution 48: 10941105.
  • Goudet J. 2001. FSTAT, version 2.9.3.2. A program to estimate and test gene diversities and fixation indices. [WWW document] URL http://www2.unil.ch/popgen/siftwares/fstat.htm. [accessed on 1 March 2007]
  • Graur D, Li WH. 2000. Fundamentals of molecular evolution, 2nd edn . Sunderland, MA, USA: Sinauer Associates Inc.
  • Griffiths M. 1994. Index of garden plants. Portland, OR, USA: Timber Press.
  • Guo WY, Yang JA, Gromyko D, Ablaev AG, Wang Q, Li CS. 2010. First record of Cercidiphylloxylon (Cercidiphyllaceae) from the Palaeocene of Fushun, NE China. Journal of Systematics and Evolution 48: 302308.
  • Harpending HC. 1994. Signature of ancient population growth in a low-resolution mitochondrial DNA mismatch distribution. Human Biology 66: 591600.
  • Harrison SP, Yu G, Takahara H, Prentice IC. 2001. Palaeovegetation (Communications arising): diversity of temperate plants in east Asia. Nature 413: 129130.
  • Hewitt G. 2000. The genetic legacy of the Quaternary ice ages. Nature 405: 907913.
  • Hijmans RJ, Cameron SE, Parra JL, Jones PG, Jarvis A. 2005. Very high resolution interpolated climate surfaces for global land areas. International Journal of Climatology 25: 19651978.
  • Hotta M. 1974. History and geography of plants. Tokyo, Japan: Sanseido. (in Japanese)
  • Isagi Y, Kudo M, Osumi K, Sato T, Sakio H. 2005. Polymorphic microsatellite DNA markers for a relictual angiosperm Cercidiphyllum japonicum Sieb. et Zucc. and their utility for Cercidiphyllum magnificum. Molecular Ecology Notes 5: 596598.
  • Jian S, Soltis PS, Gitzendanner MA, Moore MJ, Li R, Hendry TA, Qiu YL, Dhingra A, Bell CD, Soltis DE. 2008. Resolving an ancient, rapid radiation in Saxifragales. Systematic Biology 57: 3857.
  • Kay KM, Whittall JB, Hodges SS. 2006. A survey of ribosomal internal transcribed spacer substitution rates across angiosperms: an approximate molecular clock with life history effects. BMC Evolutionary Biology 6: 36.
  • Kikuchi R, Jae-Hong P, Takahashi H, Maki M. 2010. Disjunct distribution of chloroplast DNA haplotypes in the understory perennial Veratrum album ssp. oxysepalum (Melanthiaceae) in Japan as a result of ancient introgression. New Phytologist 188: 879891.
  • Kimura M. 1996. Quaternary paleogeography of the Ryukyu Arc. Journal of Geography 105: 259285.
  • Krassilov V. 2010. Cercidiphyllum and fossil allies: morphological interpretation and general problems of plant evolution and development. Russia: Pensoft Publishers.
  • Kubo M, Shimano K, Sakio H, Isagi Y, Ohno K. 2010. Difference between sprouting traits of Cercidiphyllum japonicum and C. magnificum. Journal of Forestry Research 15: 337340.
  • Li EX, Sun Y, Qiu YX, Guo JT, Comes HP, Fu CX. 2008. Phylogeography of two East Asian species in Croomia (Stemonaceae) inferred from chloroplast DNA and ISSR fingerprinting variation. Molecular Phylogenetics and Evolution 49: 702714.
  • Li JH, Dosmann MS, Del Tredici P, Andrews S. 2002. Systematic relationship of weeping Katsura based on nuclear ribosomal DNA sequences. HortScience 37: 595598.
  • Lindquist B. 1954. Notes on Cercidiphyllum magnificum Nakai. Botanisk Tidsskrift 51: 212219.
  • Liu KB. 1988. Quaternary history of the temperate forests of China. Quaternary Science Reviews 7: 120.
  • López-Pujol J, Zhao AM. 2004. China: a rich flora needed of urgent conservation. Orsis 19: 4989.
  • Lu AM. 1999. The geography of spermatophytic families and genera. Beijing, China: Science Press.
  • Magallón S, Crane PR, Herendeen PS. 1999. Phylogenetic pattern, diversity and diversification of eudicots. Annals of the Missouri Botanical Garden 86: 297372.
  • Mai DH. 1995. Tertiäre Vegetationsgeschichte. Jena, Germany: Gustav Fischer Verlag.
  • Manchester SR, Chen ZD, Lu AM, Uemura K. 2009. Eastern Asian endemic seed plant genera and their paleogeographic history throughout the Northern Hemisphere. Journal of Systematics and Evolution 47: 142.
  • Marske KA, Leschen RAB, Buckley TR. 2011. Reconciling phylogeography and ecological niche models for New Zealand beetles: looking beyond glacial refugia. Molecular Phylogenetics and Evolution 59: 89102.
  • Meyer HW, Manchester SR. 1997. Oligocene Bridge Creek Flora of the John Day Formation, Oregon. Berkeley, CA, USA: University of California Press.
  • Millien-Parra V, Jaeger JJ. 1999. Island biogeography of the Japanese terrestrial mammal assemblage: an example of a relict fauna. Journal of Biogeography 26: 959972.
  • Milne RI, Abbott RJ. 2000. Origin and evolution of invasive naturalized material of Rhododendron ponticum L. in the British Isles. Molecular Ecology 9: 541556.
  • Minder AM, Rothenbuehler C, Widmer A. 2007. Genetic structure of hybrid zones between Silene latifolia and Silene dioica (Caryophyllaceae): evidence for introgressive hybridization. Molecular Ecology 16: 25042516.
  • Nagalingum NS, Marshall CR, Quental TB, Rai HS, Little DP, Mathews S. 2011. Recent synchronous radiation of a living fossil. Science 334: 796799.
  • Nakai T. 1919. A new variety of Cercidiphyllum japonicum. Botanical Magazine (Tokyo) 33: 198.
  • Nei M. 1987. Molecular evolutionary genetics. New York, NY, USA: Columbia University Press.
  • Neiva J, Pearson GA, Valero M, Serrão EA. 2010. Surfing the wave on a borrowed board: range expansion and spread of introgressed organellar genomes in the seaweed Fucus ceranoides L. Molecular Ecology 19: 48124822.
  • Ohsawa M. 1993. Latitudinal pattern of mountain vegetation zonation in southern and eastern Asia. Journal of Vegetation Science 4: 1318.
  • Okaura T, Quang N, Ubukata M, Harada K. 2007. Phylogeographic structure and late Quaternary population history of the Japanese oak Quercus mongolica var. crispula and related species revealed by chloroplast DNA variation. Genes and Genetic Systems 82: 465477.
  • Onoe T. 1989. Palaeoenvironmental analysis based on the Pleistocene Shiobara flora in the Shiobara volcanic basin, central Japan. Report of Geological Survey of Japan 269: 1207.
  • Palumbi SR, Cipriano F, Hare MP. 2001. Predicting nuclear gene coalescence from mitochondrial data: the three-times rule. Evolution 55: 859868.
  • Peterson AT, Nakazawa Y. 2008. Environmental data sets matter in ecological niche modelling: an example with Solenopsis invicta and Solenopsis richteri. Global Ecology and Biogeography 17: 135144.
  • Petit RJ, Bialozyt R, Garnier-Gere P, Hampe A. 2004. Ecology and genetics of tree invasions: from recent introductions to Quaternary migrations. Forest Ecology and Management 197: 117137.
  • Petit RJ, Excoffier L. 2009. Gene flow and species delimitation. Trends in Ecology and Evolution 24: 386393.
  • Phillips SJ, Anderson RP, Schapire RE. 2006. Maximum entropy modeling of species geographic distributions. Ecological Modelling 190: 231259.
  • Phillips SJ, Dudík M. 2008. Modeling of species distributions with Maxent: new extensions and a comprehensive evaluation. Ecography 31: 161175.
  • Pigg KB, Ickert-Bond SM, Wen J. 2004. Anatomically preserved Liquidambar (Altingiaceae) from the middle Miocene of Yakima Canyon, Washington State, USA, and its biogeographic implications. American Journal of Botany 91: 499509.
  • Posada D, Crandall KA. 1998. MODELTEST: testing the model of DNA substitution. Bioinformatics 14: 817818.
  • Pritchard JK, Wen X, Falush D. 2009. Documentation for Structure software: Version 2.3 [WWW document] URL http://pritch.bsd.uchicago.edu/structure_software/release_versions/v2.3.2/structure_doc.pdf. [accessed on 1 August 2009]
  • Qiu YX, Fu CX, Comes HP. 2011. Plant molecular phylogeography in China and adjacent regions: tracing the genetic imprints of Quaternary climate and environmental change in the world’s most diverse temperate flora. Molecular Phylogenetics and Evolution 59: 225244.
  • Qiu YX, Guan BC, Fu CX, Comes HP. 2009a. Did glacials and/or interglacials promote allopatric incipient speciation in East Asian temperate plants? Phylogeographic and coalescent analyses on refugial isolation and divergence in Dysosma versipellis. Molecular Phylogenetics and Evolution 51: 281293.
  • Qiu YX, Qi XS, Jin XF, Tao XY, Fu CX, Naiki A, Comes HP. 2009b. Population genetic structure, phylogeography, and demographic history of Platycrater arguta (Hydrangeaceae) endemic to East China and South Japan, inferred from chloroplast DNA sequence variation. Taxon 58: 12261241.
  • Qiu YX, Sun Y, Zong M, Zhang XP, Lee J, Murata J, Fu CX, Comes HP. 2009c. Molecular phylogeography of East Asian Kirengeshoma (Hydrangeaceae) in relation to Quaternary climate change and landbridge configurations. New Phytologist 183: 480495.
  • Rambaut A, Drummond AJ. 2009. Tracer v1.5 [WWW document] URL http://tree.bio.ed.ac.uk/software/tracer/ (accessed on 20 March 2010).
  • Raymond M, Rousset F. 1995. GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism. Journal of Heredity 86: 248249.
  • Rieseberg LH, Kim SC, Randell RA, Whitney KD, Gross BL, Lexer C, Clay K. 2007. Hybridization and the colonization of novel habitats by annual sunflowers. Genetica 129: 149165.
  • Rogers AR. 1995. Genetic evidence for a Pleistocene population explosion. Evolution 49: 608615.
  • Rogers AR, Harpending H. 1992. Population growth makes waves in the distribution of pairwise genetic differences. Molecular Biology and Evolution 9: 552569.
  • Rozas J, Sánchez-De I, Barrio JC, Messeguer X, Rozas R. 2003. DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19: 24962497.
  • Sakaguchi S, Sakurai S, Yamasaki M, Isagi Y. 2010. How did the exposed seafloor function in postglacial northward range expansion of Kalopanax septemlobus? Evidence from ecological niche modelling. Ecological Research 25: 11831195.
  • Schaal BA, Hayworth DA, Olsen KM, Rauscher JT, Smith WA. 1998. Phylogeographic studies in plants: problems and prospects. Molecular Ecology 7: 465474.
  • Schneider S, Excoffier L. 1999. Estimation of demographic parameters from the distribution of pairwise differences when the mutation rates vary among sites: application to human mitochondrial DNA. Genetics 152: 10791089.
  • Soltis DE, Soltis PS. 1997. Phylogenetic relationships in Saxifragaceae sensu lato: a comparison of topologies based on 18S rDNA and rbcL sequences. American Journal of Botany 84: 504522.
  • Sugahara K, Kaneko Y, Ito S, Yamanaka K, Sakio H, Hoshizaki K, Suzuki W, Yamanaka N, Setoguchi H. 2011. Phylogeography of Japanese horse chestnut (Aesculus turbinata) in the Japanese Archipelago based on chloroplast DNA haplotypes. Journal of Plant Research 124: 7583.
  • Swets JA. 1988. Measuring the accuracy of diagnostic systems. Science 240: 12851293.
  • Tagane S, Hiramatsu M, Okubo H. 2008. Hybridization and asymmetric introgression between Rhododendron eriocarpum and R. indicum on Yakushima Island, southwest Japan. Journal of Plant Research 121: 387395.
  • Tajima F. 1989. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123: 585595.
  • Takahashi T, Tani N, Taira H, Tsumura Y. 2005. Microsatellite markers reveal high allelic variation in natural populations of Cryptomeria japonica near refugial areas of the last glacial period. Journal of Plant Research 118: 8390.
  • Takhtajan AL. 1969. Flowering plants: origin and dispersal. Edinburgh, UK: Oliver and Boyd.
  • Tanai T. 1981. Geological notes on the fossil localities. In: Nishida M, ed. A report of the paleobotanical survey to southern Chile. Chiba, Japan: Chiba University, 1030.
  • Tang CQ, Ohsawa M. 2002. Tertiary relic deciduous forests on a humid subtropical mountain, Mt. Emei, Sichuan, China. Folia Geobotanica 37: 93106.
  • Tsukada M. 1988. Japan. In: Huntley B, Webb T III, eds. Vegetation history. Dordrecht, the Netherlands: Kluwer, 459518.
  • Uemura K. 1991. Middle Miocene plant megafossil assemblages from Onnebetsu and Niupu in the Nayoro area, Hokkaido. Memoirs of the National Science Museum, Tokyo 24: 1726.
  • Wan T, Zhang JM. 2002. The growth law of the individual from artificial community of 10-year-old Cercidiphyllum japonicum. Journal of Sichuan Forestry Science and Technology 23: 3438. (in Chinese)
  • Wang HS. 1988. A study on the distribution and origin of endemic genera of spermatophytes in China. In: Whyte P, Aigner JS, Jablonski NG, Taylor G, Walker D, Wang PX, Chak-Lam S, eds. The palaeoenvironment of East Asia from the Mid-Tertiary. Proceedings of the 2nd conference, vol. 1. Hong Kong, China: Centre of Asia Studies, University of Hong Kong, 605620.
  • Weir BS, Cockerham CC. 1984. Estimating F-statistics for the analysis of population structure. Evolution 38: 13581370.
  • Winkler MG, Wang PK. 1993. The Late-Quaternary vegetation and climate of China. In: Wright HE, Kutzbach JE, Webb T III, Ruddiman WE, Street-Perrott FA, Bartlein PJ, eds. Global climates since the Last Glacial Maximum. London, UK: University of Minnesota Press, 265293.
  • Wu CA, Campbell DR. 2005. Cytoplasmic and nuclear markers reveal contrasting patterns of spatial genetic structure in a natural Ipomopsis hybrid zone. Molecular Ecology 14: 781792.
  • Yu G, Chen X, Ni J, Cheddadi R, Guiot J, Han H, Harrison SP, Huang C, Ke M, Kong Z et al. 2000. Palaeovegetation of China: a pollen data-based synthesis for the mid-Holocene and last glacial maximum. Journal of Biogeography 27: 635664.
  • Zachos J, Pagani M, Sloan L, Thomas E, Billups K. 2001. Trends, rhythms, and aberrations in global climate 65 Ma to present. Science 292: 686693.
  • Zachos JC, Dickens GR, Zeebe RE. 2008. An early Cenozoic perspective on greenhouse gas warming and carbon-cycle dynamics. Nature 451: 279283.
  • Zhang ZY, Zheng XM, Ge S. 2007. Population genetic structure of Vitex negundo (Verbenaceae) in Three-Gorge Area of the Yangtze River: the riverine barrier to seed dispersal in plants. Biochemical Systematics and Ecology 35: 506516.