Comparative proteomics of the recently and recurrently formed natural allopolyploid Tragopogon mirus (Asteraceae) and its parents
Article first published online: 3 AUG 2012
© 2012 The Authors. New Phytologist © 2012 New Phytologist Trust
Volume 196, Issue 1, pages 292–305, October 2012
How to Cite
Koh, J., Chen, S., Zhu, N., Yu, F., Soltis, P. S. and Soltis, D. E. (2012), Comparative proteomics of the recently and recurrently formed natural allopolyploid Tragopogon mirus (Asteraceae) and its parents. New Phytologist, 196: 292–305. doi: 10.1111/j.1469-8137.2012.04251.x
- Issue published online: 24 AUG 2012
- Article first published online: 3 AUG 2012
- Received: 22 April 2012, Accepted: 22 June 2012
- cell basis;
- isobaric tag for relative and absolute quantification (iTRAQ);
- quantitative additivity;
- •We examined the proteomes of the recently formed natural allopolyploid Tragopogon mirus and its diploid parents (T. dubius, T. porrifolius), as well as a diploid F1 hybrid and synthetic T. mirus.
- •Analyses using iTRAQ LC-MS/MS technology identified 476 proteins produced by all three species. Of these, 408 proteins showed quantitative additivity of the two parental profiles in T. mirus (both natural and synthetic); 68 proteins were quantitatively differentially expressed.
- •Comparison of F1 hybrid, and synthetic and natural polyploid T. mirus with the parental diploid species revealed 32 protein expression changes associated with hybridization, 22 with genome doubling and 14 that had occurred since the origin of T. mirus c. 80 yr ago. We found six proteins with novel expression; this phenomenon appears to start in the F1 hybrid and results from post-translational modifications.
- •Our results indicate that the impact of hybridization on the proteome is more important than is polyploidization. Furthermore, two cases of homeolog-specific expression in T. mirus suggest that silencing in T. mirus was not associated with hybridization itself, but occurred subsequent to both hybridization and polyploidization. This study has shown the utility of proteomics in the analysis of the evolutionary consequences of polyploidy.