Impact of SO2 on Arabidopsis thaliana transcriptome in wildtype and sulfite oxidase knockout plants analyzed by RNA deep sequencing
Article first published online: 1 OCT 2012
© 2012 The Authors. New Phytologist © 2012 New Phytologist Trust
Volume 196, Issue 4, pages 1074–1085, December 2012
How to Cite
Hamisch, D., Randewig, D., Schliesky, S., Bräutigam, A., Weber, A. P. M., Geffers, R., Herschbach, C., Rennenberg, H., Mendel, R. R. and Hänsch, R. (2012), Impact of SO2 on Arabidopsis thaliana transcriptome in wildtype and sulfite oxidase knockout plants analyzed by RNA deep sequencing. New Phytologist, 196: 1074–1085. doi: 10.1111/j.1469-8137.2012.04331.x
- Issue published online: 5 NOV 2012
- Article first published online: 1 OCT 2012
- Manuscript Accepted: 9 AUG 2012
- Manuscript Received: 29 MAY 2012
- Deutsche Forschungsgemeinschaft. Grant Numbers: HA3107/4, Re515/32
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Fig. S1 Scattered matrix plot presenting the distribution RPKM values for different comparisons between WT, WT[+], SO-KO and SO-KO[+].
Fig. S2 GO analysis of fivefold regulated transcripts.
Fig. S3 KEGG metabolic pathways of the four different comparison pairs using fivefold data.
Fig. S4 SO [At3G01910] splice variants and mRNA fragment mapping for WT, WT[+], SO-KO and SO-KO[+].
Fig. S5 SO [At3G01910] mRNA mapping for WT, WT[+], SO-KO and SO-KO[+].
|nph4331-sup-0002-TableS1.xls||application/msexcel||7843K||Table S1 Transcript raw data|
Table S2 Raw data for sulfur metabolism-associated genes
Table S3 RPKM values and fold-change calculations of highly regulated plant defensins (PDFs)
Table S4 RPKM values and fold-change calculations of highly regulated peroxidase genes
Table S5 Script for programming in R to execute DEGseq tool