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Fig. S1 Bootstrap SSU–LSU tree with expanded archaeal taxa

Fig. S2 MULTIDIVTIME (MDT) control parameters.

Fig. S3 Alternative branching relationships of Methanopyrus obtained by MB analyses: (A) Methanopyrus (red) branching basal in the Euryarchaeota, obtained using the conservative 55-gene dataset; (B) Methanopyrus branching after the Thermococcales, obtained with the 86-gene dataset; (C) Methanopyrus branching in the Methanococclaes and Methanobacteriales, obtained with the 100-gene dataset.

Fig. S4 Exploring how changing the root maximum age affects inferred ages of internal nodes.

Fig. S5 Node ages for alternative tree topologies.

Table S1 Sequences in concatenated dataset.

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Please note: Wiley Blackwell is not responsible for the content or functionality of any supporting information supplied by the authors. Any queries (other than missing content) should be directed to the corresponding author for the article.