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Table S1. Allele frequencies at 20 sites in six marine protected areas (MPAs) along the east coast of Australia for the brooding coral Pocillopora damicornis, ordered by increasing latitude. Estimates of allele frequencies for One Tree Island and Lord Howe Island are from Ayre & Miller 2004 and Miller & Ayre 2004. Na=allelic diversity, Ho=Observed heterozygosity, He=expected heterozygosity, f=Wright's fixation index, Ng=number of unique genotypes. GO=observed genotypic diversity, GE=expected genotypic diversity. “na” indicates that GO:GE was not calculated due to insufficient allelic variation, values of GO:GE in bold are significantly <1 (p<0.05).

Table S2. Allele frequencies at ten sites within four MPAs along the east coast of Australia for the broadcast-spawning coral Goniastrea australensis, ordered by increasing latitude. Na=allelic diversity, Ho=Observed heterozygosity, He=expected heterozygosity, f=Wright's fixation index, Ng=number of unique genotypes.

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