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Fig. S1. Protein sequence alignment of angiosperm FAMA sequences. The bHLH domain is in blue, the SMF domain in green, the N-terminal extension to the bHLH is in purple and sites of high sequence conservation that are unique to FAMA are in red. Al=Arabidopsis lyrata, Cs=Cucumis sativus (cucumber), Vv=Vitis vinifera (grape), Rc=Ricinus communis (castor bean), Pt=Populus trichocarpa (poplar), Cp=Carica papaya (papaya), Os=Oryza sativa (rice), Sb=Sorghum bicolor and Zm=Zea mays (maize). The Arabidopsis sequence is in bold. Identical residues are marked with “*”, conservative substitutions with “:” and semi-conservative substitutions with “.”.

Fig. S2. Protein sequence alianment of angiosperm MUTE sequences. The bHLH domain is marked in blue and the SMF domain in green. Conserved region unique to MUTE is in orange. Al=Arabidopsis lyrata, Cs=Cucumis sativus (cucumber), Vv=Vitis vinifera (grape), Rc=Ricinus communis (castor bean), Pt=Populus trichocarpa (poplar), Cp=Carica papaya (papaya), Os=Oryza sativa (rice), Sb=Sorghum bicolor and Zm=Zea mays (maize). The Arabidopsis sequence is in bold. Identical residues are marked with “*”, conservative substitutions with “:” and semi-conservative substitutions with “.”.

Fig. S3. Protein sequence alignment of angiosperm SPCH sequences. The bHLH domain is marked in blue and the SMF domain in green. Residues in the MPK target domain that are highly conserved or that are full MAP kinase consensus phosphorylation sites are in gold. Al=Arabidopsis lyrata, Cs=Cucumis sativus (cucumber), Vv=Vitis vinifera (grape), Rc=Ricinus communis (castor bean), Pt=Populus trichocarpa (poplar), Cp=Carica papaya (papaya), Os=Oryza sativa (rice), Sb=Sorghum bicolor and Zm=Zea mays (maize). The Arabidopsis sequence is in bold. Identical residues are marked with “*”, conservative substitutions with “:” and semi-conservative substitutions with “.”.

Fig. S4. Protein sequence alignment of Selaginella and Physcomitrella subgroup Ia bHLHs to SPCH, MUTE and FAMA. The bHLH domain is marked in blue and the SMF domain in green and FAMA, MUTE and SPCH unique regions are red, orange and gold respectively. Boxes mark the basic and loop regions of the bHLH domain. Sm=Selaginella moellendorffii, Pp=Physcomitrella patens, Pg=Picea glauca The Arabidopsis sequences are in bold. Identical residues are marked with “*”, conservative substitutions with “:” and semi-conservative substitutions with “.”.

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Please note: Wiley Blackwell is not responsible for the content or functionality of any supporting information supplied by the authors. Any queries (other than missing content) should be directed to the corresponding author for the article.