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Additional Supporting Information may be found in the online version of this article:

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Table S1. Details of gene expression probes.

Table S2. Wnt sequences retrieved from the Amphioxus and chick genomes together with mouse orthologues (X indicates that this gene is not present in this species).

Table S3. Wnt2 gene expression in the chick.

Table S4. Wnt2 gene expression in the mouse.

Table S5. Wnt5 gene expression in the chick.

Table S6. Wnt5 gene expression in the mouse.

Table S7. Wnt7 gene expression in the chick.

Table S8. Wnt7 gene expression in the mouse.

Table S9. Wnt8 gene expression in the chick.

Table S10. Wnt8 gene expression in the mouse.

Table S11. Comparison of Wnt2 paralogue (Wnt2, Wnt2b) expression in the chick across HH20–HH26 (Similar =, Degree of difference *, **, **, as defined in Methods).

Table S12. Comparison of Wnt2 paralogue (Wnt2a, Wnt2b) expression in the mouse across TS15–TS19 (Similar =, Degree of difference *, **, ***).

Table S13. Comparison of Wnt2 orthologue expression in the chick and mouse at stages HH20–HH26 and TS15–TS19, respectively (Similar =, Degree of difference *, **, ***).

Table S14. Comparison of Wnt2b orthologue expression in the chick and mouse at stages HH20–HH26 and TS15–TS19, respectively (Similar =, degree of difference *, **, ***).

Table S15. Comparison of Wnt5 paralogue (Wnt5a, Wnt5b) expression in the chick across HH20–HH26 (Similar =, degree of difference *, **, ***).

Table S16. Comparison of Wnt5 paralogue (Wnt5a, Wnt5b) expression in the mouse across TS15–TS19 (Similar =, degree of difference *, **, ***).

Table S17. Comparison of Wnt5a orthologue expression in the chick and mouse at stages HH20–HH26 and TS15–TS19, respectively (Similar =, degree of difference *, **, ***).

Table S18. Comparison of Wnt5b orthologue expression in the chick and mouse at stages HH20–HH26 and TS15–TS19, respectively (Similar =, degree of difference *, **, ***).

Table S19. Comparison of Wnt7 paralogue (Wnt7a, Wnt7b) expression in the chick across HH20–HH26 (Similar =, degree of difference *, **, ***).

Table S20. Comparison of Wnt7 paralogue (Wnt7a, Wnt7b) expression in the mouse across TS15–TS19 (Similar =, degree of difference *, **, ***).

Table S21. Comparison of Wnt7a orthologue expression in the chick and mouse at stages HH20–HH26 and TS15–TS19, respectively (Similar =, degree of difference *, **, ***).

Table S22. Comparison of Wnt7b orthologue expression in the chick and mouse at stages HH20–HH26 and TS15–TS19, respectively (Similar =, degree of difference *, **, ***).

Table S23. Comparison of Wnt8 paralogue (Wnt8a, Wnt8b) expression in the chick across HH20–HH26 (Similar =, degree of difference *, **, ***).

Table S24. Comparison of Wnt8 paralogue (Wnt8a, Wnt8b) expression in the mouse across TS15–TS19 (Similar =, degree of difference *, **, ***).

Table S25. Comparison of Wnt8a orthologue expression in the chick and mouse at stages TS15–TS19 and HH20–HH26, respectively (Similar =, degree of difference *, **, ***).

Table S26. Comparison of Wnt8b orthologue expression in the chick and mouse at stages TS15–TS19 and HH20–HH26, respectively (Similar =, degree of difference *, **, ***).

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