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Table S1. Locations from which samples of nongeniculate coralline species examined were collected in the Ryukyu Islands, Japan.

Table S2. List of nongeniculate coralline species identified and sequenced in this study.

Table S3. List of additional SSU rDNA and psbA sequences used in this study.

Table S4. Summary of parsimony analysis and evolutionary model parameters (determined from a hierarchical likelihood ration test) for two genes and concatenated data sets.

Table S5. SSU r DNA sequence differences within species examined in this study. Regions of missing data were excluded from calculations.

Table S6. Major changes to the composition of the Mastophoroideae since Foslie (1903), Svedelius (1911), Setchell (1943), Johansen (1969), Johansen (1981), Woelkerling (1988), and Penrose and Chamberlain (1993). Shaded taxa are excluded from the subfamily.

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