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Appendix S1.The list of putative functional annotations of Alexandrium tamarense genes used in this study based on the Gene Ontology Database.

Fig. S1. Phylogeny of cytochrome b6-f complex iron-sulfur subunit that provides evidence of putative EGT among the Plantae lineages and other photosynthetic eukaryotes, including dinoflagellates. Non-parametric bootstrap support values ≥50% are shown at the nodes of the tree. Dinoflagellates are highlighted in bold-face. The lineages of dinoflagellates and Plantae constitute >70% of the lineages within the strongly supported clade (bootstrap 71%). The unit of branch length is in the number of substitutions per site.

Fig. S2. Phylogeny of triose-phosphate isomerase that shows evidence of putative E/HGT among chromalveolates. Non-parametric bootstrap support values ≥50% are shown at the nodes of the tree. Dinoflagellates are highlighted in bold-face. The unit of branch length is in the number of substitutions per site.

Table S1. The number of protein sequences in the database that was used for the phylogenomic analysis (based on phyla).

Table S2. Analysis of Alexandrium tamarense (Dinophyceae) genes reveals the remarkably complex evolutionary history of a microbial eukaryote.

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jpy1194_sm_TableS2.xls138KSupporting info item

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