• 1
    Akane A, Matsubara K, Nakamura H, Takahashi S, Kimura K. Identification of the heme compound copurified with deoxyribonucleic acid (DNA) from blood stains, a major inhibitor of polymerase chain reaction (PCR) amplification. J Forensic Sci 1994;39(2):36272.
  • 2
    Wilson IG. Inhibition and facilitation of nucleic acid amplification. Appl Environ Microbiol 1997;63(10):374151.
  • 3
    Moreira D. Efficient removal of PCR inhibitors using agarose-embedded DNA preparations. Nucleic Acids Res 1998;26(13):330910.
  • 4
    Kreader CA. Relief of amplification inhibition in PCR with bovine serum albumin or T4 gene 32 protein. Appl Environ Microbiol 1996;62(3):11026.
  • 5
    Wilde J, Eiden J, Yolken R. Removal of inhibitory substances from human fecal specimens for detection of group A rotaviruses by reverse transcriptase and polymerase chain reactions. J Clin Microbiol 1990;28(6):13007.
  • 6
    Jung JM, Comey CT, Baer DB, Budowle B. Extraction strategy for obtaining DNA from bloodstains for PCR amplification and typing of the HLA-DQ-alpha-gene. Int J Legal Med 1991;104:1458.
  • 7
    Greenspoon SA, Scarpetta MA, Drayton ML, Turek SA. QIAamp spin columns as a method of DNA isolation for forensic casework. J Forensic Sci 1998;43(5):102430.
  • 8
    Ye J, Ji A, Parra EJ, Zheng X, Jiang C, Zhao X, et al. A simple and efficient method for extracting DNA from old and burned bone. J Forensic Sci 2004;49(4):7549.
  • 9
    Graffy EA, Foran DR. A simplified method for mitochondrial DNA extraction from head hair shafts. J Forensic Sci 2005;50(5):111922.
  • 10
    Wallace DM. Precipitation of nucleic acids. Methods Enzymol 1987;152:418.
  • 11
    Makristathis A, Pasching E, Schütze K, Wimmer M, Rotter ML, Hirschl AM. Detection of Helicobacter pylori in stool specimens by PCR and antigen enzyme immunoassay. J Clin Microbiol 1998;36(9):27724.
  • 12
    Gur’ev SO,  Fedchenko VI, Zhdanov RI. New method of PCR amplification of two human minisatellite loci and reliable method of DNA isolation. Biull Eksp Biol Med 1999;127(3):35760.
  • 13
    Zink AR, Grabner W, Nerlich AG. Molecular identification of human tuberculosis in recent and historic bone tissue samples: the role of molecular techniques for the study of historic tuberculosis. Am J Phys Anthropol 2005;126(1):3247.
  • 14
    Miller DN, Bryant JE, Madsen EL, Ghiorse WC. Evaluation and optimization of DNA extraction and purification procedures for soil and sediment samples. Appl Environ Microbiol 1999;65(11):471524.
  • 15
    Shen WH, Hohn B. DMSO improves PCR amplification of DNA with complex secondary structure. Trends Genet 1992;8(7):227.
  • 16
    Sidhu MK, Liao MJ, Rashidbaigi A. Dimethyl sulfoxide improves RNA amplification. BioTechniques 1996;21(1):447.
  • 17
    Abu Al-Soud W, Rådström P. Capacity of nine thermostable DNA polymerases to mediate DNA amplification in the presence of PCR-inhibiting samples. Appl Environ Microbiol 1998;64(10):374853.
  • 18
    Katcher HL, Schwartz I. A distinctive property of Tth DNA polymerase: enzymatic amplification in the presence of phenol. BioTechniques 1994;16(1):8492.
  • 19
    Wiedbrauk DL, Werner JC, Drevon AM. Inhibition of PCR by aqueous and vitreous fluids. J Clin Microbiol 1995;33(10):26436.
  • 20
    Kim S, Labbe RG, Ryu S. Inhibitory effects of collagen on the PCR for detection of Clostridium perfringens. Appl Environ Microbiol 2000;66(3):12135.
  • 21
    Braithwaite D, Ito J. Compilation, alignment, and phylogenetic relationships of DNA polymerases. Nucleic Acids Res 1993;21(4):787802.
  • 22
    Pavlov A, Pavlova N, Kozyavkin S, Slesarev A. Recent developments in the optimization of thermostable DNA polymerases for efficient applications. Trends Biotechnol 2004;22(5):25360.
  • 23
    McDonald J, Hall A, Gasparutto D, Cadet J, Ballantyne J, Woodgate R. Novel thermostable Y-family polymerases: applications for the PCR amplification of damaged or ancient DNAs. Nucleic Acids Res 2006;34(4):110211.
  • 24
    Lundberg KS, Shoemaker DD, Adams MW, Short JM, Sorge JA, Mathur EJ. High-fidelity amplification using a thermostable DNA polymerase isolated from Pyrococcus furiosus. Gene 1991;108(1):16.
  • 25
    Myers TW, Gelfand DH. Reverse transcription and DNA amplification by a Thermus thermophilus DNA polymerase. Biochemistry 1991;30(31):76616.
  • 26
    Barnes WM. PCR amplification of up to 35-kb DNA with high fidelity and high yield from lambda bacteriophage templates. Proc Natl Acad Sci USA 1994;91(6):221620.
  • 27
    Kermekchiev MB, Tzekov A, Barnes WM. Cold-sensitive mutants of Taq DNA polymerase provide a hot start for PCR. Nucleic Acids Res 2003;31(21):613947.
  • 28
    Patel PH, Kawate H, Adman E, Ashbach M, Loeb LA. A single highly mutable catalytic site amino acid is critical for DNA polymerase fidelity. J Biol Chem 2001;276(7):504451.
  • 29
    Tabor S, Richardson CC. A single residue in DNA polymerases of the Escherichia coli DNA polymerase I family is critical for distinguishing between deoxy- and dideoxyribonucleotides. Proc Natl Acad Sci USA 1995;92(14):633943.
  • 30
    Li Y, Mitaxov V, Waksman G. Structure-based design of Taq DNA polymerases with improved properties of dideoxynucleotide incorporation. Proc Natl Acad Sci USA 1999;96(17):94916.
  • 31
    Villbrandt B, Sobek H, Frey B, Schomburg D. Domain exchange: chimeras of Thermus aquaticus DNA polymerase, Escherichia coli DNA polymerase I and Thermotoga neapolitana DNA polymerase. Protein Eng 2000;13(9):64554.
  • 32
    Pavlov AR, Belova GI, Kozyavkin SA, Slesarev AI. Helix-hairpin-helix motifs confer salt resistance and processivity on chimeric DNA polymerases. Proc Natl Acad Sci USA 2002;99(21):135105.
  • 33
    Davidson JF, Fox R, Harris DD, Lyons-Abbott S, Loeb LA. Insertion of the T3 DNA polymerase thioredoxin binding domain enhances the processivity and fidelity of Taq DNA polymerase. Nucleic Acids Res 2003;31(16):47029.
  • 34
    Wang Y, Prosen DE, Mei L, Sullivan JC, Finney M, Vander Horn PB. A novel strategy to engineer DNA polymerases for enhanced processivity and improved performance in vitro. Nucleic Acids Res 2004;32(3):1197207.
  • 35
    Edson SM, Ross JP, Coble MD, Parsons TJ, Barritt SM. Naming the dead—confronting the realities of rapid identification of degraded skeletal remains. Forensic Sci Rev 2004;16(1):6390.
  • 36
    Scholz M, Giddings I, Pusch CM. A polymerase chain reaction inhibitor of ancient hard and soft tissue DNA extracts is determined as human collagen type I. Anal Biochem 1998;259(2):2836.
  • 37
    Tsai YL, Olson BH. Rapid method for separation of bacterial DNA from humic substances in sediments for polymerase chain reaction. Appl Environ Microbiol 1992;58(7):22925.
  • 38
    Mutolo M. Molecular Identification of Pathogens in Ancient Skeletal Remains from Butrint and Diaporit, Albania [thesis]. East Lansing (MI): Michigan State University, 2006.
  • 39
    Lahiff S, Glennon M, O’Brien L, Lyng J, Smith T, Maher M, et al. Species-specific PCR for the identification of ovine, porcine and chicken species in meat and bone meal (MBM). Mol Cell Probes 2001;15(1):2735.
  • 40
    Wang MK, Chang TW, Huang MY. Iron oxides distribution in red soils of Taiwan. J Chin Agric Chem Soc 1993;31:22946.
  • 41
    Pai CW, Wang MK, Chiang HC, King HB, Hwong JL. Characterization of iron nodules in Ultisol of central Taiwan. Aust J Soil Res 2003;41(1):3346.
  • 42
    Stevenson FJ. Humus chemistry: genesis, composition, reactions. New York: Wiley & Sons, 1982.
  • 43
    Young CC, Burgho RL, Keim LG, Minak-Bernero M, Lute JR, Hinton SM. Polyvinylpyrrolidone-agarose gel electrophoresis purification of polymerase chain reaction-amplifiable DNA from soils. Appl Environ Microbiol 1993;59(6):19724.
  • 44
    Tebbe CC, Vahjen W. Interference of humic acids and DNA extracted directly from soil in detection and transformation of recombinant DNA from bacteria and a yeast. Appl Environ Microbiol 1993;59(8):265765.
  • 45
    Tuross N. The biochemistry of ancient DNA in bone. Experientia 1994;50(6):5305.
  • 46
    Cipollaro M, Di Bernado G, Forte A, Galano G, De Masi L, Galderisi U, et al. Histological analysis and ancient DNA amplification of human bone remains found in Caius Iulius Polybius house in Pompeii. Croat Med J 1999;40(3):3927.
  • 47
    Kolman CJ, Tuross N. Ancient DNA analysis of human populations. Am J Phys Anthropol 2000;111(1):523.
  • 48
    Sutlović D, Definis Gojanović M, Andelinović S, Gugić D, Primorac D. Taq polymerase reverses inhibition of quantitative real time polymerase chain reaction by humic acid. Croat Med J 2005;46(4):55662.
  • 49
    Giambernardi TA, Rodeck U, Klebe RJ. Bovine serum albumin reverses inhibition of RT-PCR by melanin. BioTechniques 1998;25(4):5646.
  • 50
    Abu Al-Soud W, Jönsson LJ, Rådström P. Identification and characterization of immunoglobulin G in blood as a major inhibitor of diagnostic PCR. J Clin Micriobiol 2000;38(1):34550.
  • 51
    Bickley J, Short JK, McDowell DG, Parkes HC. Polymerase chain reaction (PCR) detection of Listeria monocytogenes in diluted milk and reversal of PCR inhibition caused by calcium ions. Lett Appl Microbiol 1996;22(2):1538.
  • 52
    Thomas M, Wong Y, Thomas D, Ajaz M, Tsang V, Gallagher PJ, et al. Relation between direct detection of Chlamydia pneumoniae DNA in human coronary arteries at postmortem examination and histological severity (Stary grading) of associated atherosclerotic plaque. Circulation 1999;99(21):27336.