SEARCH

SEARCH BY CITATION

LITERATURE CITED

  • Affonso, E., and F. Rantin. 2005. Respiratory responses of the air-breathing fish Hoplosternum littorale to hypoxia and hydrogen sulfide. Comp. Biochem. Physiol. C 141:275280.
  • Alvarez del Villar, J. 1948. Descripción de una nueva especie de Mollienisia capturada en Baños del Azufre, Tabasco (Pisces, Poeciliidae). Anales de la Escuela Nacional de Ciencias Biológicas 5:275281.
  • Arendt, J., and D. Reznick. 2008. Convergence and parallelism reconsidered: what have we learned about the genetics of adaptation? Trends. Ecol. Evol. 23:2632.
  • Astall, C., S. Anderson, A. Taylor, and R. Atkinson. 1997. Comparative studies of the branchial morphology, gill area and gill ultrastructure of some thalassinidean mud-shrimps (Crustacea: Decapoda: Thalassinidea). J. Zool. 241:665688.
  • Bagarinao, T. 1992. Sulfide as an environmental factor and toxicant: tolerance and adaptations in aquatic organisms. Aquat. Toxicol. 24:2162.
  • Bagarinao, T., and R. D. Vetter. 1989. Sulfide tolerance and detoxification in shallow water marine fishes. Mar. Biol. 103:291302.
  • Bagarinao, T., and R. D. Vetter. 1993. Sulfide tolerance and adaptation in the California killifish, Fundulus parvipinnis, a salt marsh resident. J. Fish Biol. 42:729748.
  • Beatty, J. 2010. Reconsidering the importance of chance variation. Pp. 2144 in M.Pigliucci and G. B.Müller, eds. Evolution: the extended synthesis. MIT Press, Cambridge , MS .
  • Blount, Z. D., C. Z. Borland, and R. E. Lenski. 2008. Historical contingency and the evolution of a key innovation in an experimental population of Escherichia coli. Proc. Natl. Acad. Sci. USA 105:78997906.
  • Bond, A. N. 1960. An analysis of the response of salamander gills to changes in the oxygen concentration of the medium. Dev. Biol. 2:120.
  • Brauner, C. J., C. L. Ballantyne, D. J. Randall, and A. L. Val. 1995. Air-breathing in the armored catfish (Hoplosternum littorale) as an adaptation to hypoxic, acidic, and hydrogen sulfide-rich waters. Can. J. Zool. 73:739744.
  • Breden, F., M. B. Ptacek, M. Rashed, D. Taphorn, and C. A. Figueiredo. 1999. Molecular phylogeny of the live-bearing fish genus Poecilia (Cyprinodontiformes: Poeciliidae). Mol. Phylogenet. Evol. 12:95104.
  • Broughton, R. E., and J. R. Gold. 2000. Phylogenetic relationships in the North American cyprinid genus Cyprinella (Actinopterygii: Cyprinidae) based on sequences of the mitochondrial ND2 and ND4L genes. Copeia 2000:110.
  • Burggren, W. W., and A. Mwalukoma. 1983. Respiration during chronic hypoxia and hyperoxia in larval and adult bullfrogs (Rana catesbeiana): I. Morphological responses of lungs, skin, and gills. J. Exp. Biol. 105:191203.
  • Chapman, L. J., and K. G. Hulen. 2001. Implications of hypoxia for the brain size and gill morphometry of mormyrid fishes. J. Zool. 254:461472.
  • Chapman, L. J., J. Albert, and F. Galis. 2008. Developmental plasticity, genetic differentiation, and hypoxia-induced trade-offs in an African cichlid. Open Evol. J. 2:7588.
  • Chapman, L. J., C. A. Chapman, D. A. Brazeau, B. McLaughlin, and M. Jordan. 1999. Papyrus swamps, hypoxia, and faunal diversification: variation among populations of Barbus neumayeri. J. Fish Biol. 54:310327.
  • Chapman, L. J., F. Galis, and J. Shinn. 2000. Phenotypic plasticity and the possible role of genetic assimilation: hypoxia-induced trade-offs in the morphological traits of an African cichlid. Ecol. Lett. 3:387393.
  • Chapman, L. J., T. J. DeWitt, V. Tzenava, and J. Paterson. 2007. Interdemic variation in the gill morphology of a eurytopic African cichlid. Proceedings of the 9th International Symposium on Fish Physiology, Toxicology, and Water Quality EPA/600/R-07.010;209225.
  • Chen, K., and J. Morris. 1972. Kinetics of oxidation of aqueous sulfide by O2. Environ. Sci. Technol. 6:529537.
  • Clarke, B. 1975. Contribution of ecological genetics to evolutionary theory: detecting direct effects of natural selection on particular polymorphic loci. Genetics 79:101113.
  • Cline, J., and F. Richards. 1969. Oxygenation of hydrogen sulfide in seawater at constant salinity, temperature, and pH. Environ. Sci. Technol. 3:838843.
  • Cooper, D., W. Cooper, W. de Mello, E. Saltzman, and R. Zika. 1989. Variability of biogenic sulfur emissions from Florida wetlands. Pp. 3143 in E.Saltzman and W.Cooper, eds. Biogenic sulfur in the environment. American Chemical Society, Washington , DC .
  • Crispo, E., and L. J. Chapman. 2010. Geographic variation in phenotypic plasticity in response to dissolved oxygen in an African cichlid fish. J. Evol. Biol. 23:20912103.
  • Curtis, C., T. Bartholomew, F. Rose, and K. Dodgson. 1972. Detoxication of sodium 35S-sulphide in the rat. Biochem. Pharmacol. 21:23132321.
  • Dettman, J., J. Anderson, and L. Kohn. 2008. Divergent adaptation promotes reproductive isolation among experimental populations of the filamentous fungus Neurospora. BMC Evol. Biol. 8:35.
  • Dettman, J., C. Sirjusingh, L. Kohn, and J. Anderson. 2007. Incipient speciation by divergent adaptation and antagonistic epistasis in yeast. Nature 447:585588.
  • Dodd, D. M. B. 1989. Reproductive isolation as a consequence of adaptive divergence in Drosophila pseudoobscura. Evolution 43:13081311.
  • Dries, L. A. 2003. Peering through the looking glass at a sexual parasite: are Amazon mollies Red Queens? Evolution 57:13871396.
  • Endler, J. A. 1986. Natural selection in the wild. Princeton Univ. Press, Princeton , NJ .
  • Fontanier, M. E., and M. Tobler. 2009. A morphological gradient revisited: cave mollies vary not only in eye size. Environ. Biol. Fishes 86:285292.
  • Funk, D. J. 1998. Isolating a role for natural selection in speciation: host adaptation and sexual isolation in Neochlamisius bebbianae leaf beetles. Evolution 52:17441759.
  • Gavrilets, S., A. Vose, M. Barluenga, W. Salzburger, and A. Meyer. 2007. Case studies and mathematical models of ecological speciation. 1. Cichlids in a crater lake. Mol. Ecol. Fishes 16:28932909.
  • Gow, J. L., C. L. Peichel, and E. B. Taylor. 2007. Ecological selection against hybrids in natural populations of sympatric threespine sticklebacks. J Evol. Biol. 20:21732180.
  • Grieshaber, M. K., and S. Völkel. 1998. Animal adaptations for tolerance and exploitation of poisonous sulfide. Annu. Rev. Physiol. 60:3353.
  • Hatfield, T., and D. Schluter. 1999. Ecological speciation in sticklebacks: environment dependent hybrid fitness. Evolution 53:866873.
  • Hildebrandt, T. M., and M. Grieshaber. 2008. Three enzymatic activities catalyze the oxidation of sulfide to thiosulfate in mammalian and invertebrate mitochondria. FEBS J. 275:33523361.
  • Hohenlohe, P. A., S. Bassham, P. D. Etter, N. Stiffler, E. A. Johnson, and W. A. Cresko. 2010. Population genomics of parallel adaptation in threespined stickleback using sequenced RAD tags. PLoS Genet. 6:e1000862.
  • Hrbek, T., J. Seckinger, and A. Meyer. 2007. A phylogenetic and biogeographic perspective on the evolution of poeciliid fishes. Mol. Phylogenet. Evol. 43:986998.
  • Hubbs, C. 1959. Population analysis of a hybrid swarm between Gambusia affinis and G. heterochir. Evolution 13:236246.
  • Ip, Y. K., S. S. L. Kuah, and S. F. Chew. 2004. Strategies adopted by the mudskipper Boleophthalmus boddaerti to survive sulfide exposure in normoxia or hypoxia. Physiol. Biochem. Zool. 77:824837.
  • Johannesson, K. 2001. Parallel speciation: a key to sympatric divergence. Trends Ecol. Evol. 16:148153.
  • Johannesson, K., M. Panova, P. Kemppainen, C. André, E. Rolán-Alvarez, and R. K. Bultlin. 2010. Repeated evolution of reproductive isolation in a marine snail: unveiling mechanisms of speciation. Philos. Trans. R. Soc. B 365:17351747.
  • Jordan, D. S., and J. O. Snyder. 1899. Notes on a collection of fishes from the rivers of Mexico, with a description of twenty new species. Bull. US Fish Comm. 19:115147.
  • Kilias, G., S. N. Alahiotis, and M. Pelecanos. 1980. A multifactorial genetic investigation of speciation theory using Drosophila melanogaster. Evolution 34:730737.
  • Kimura, H. 2002. Hydrogen sulfide as a neuromodulator. Mol. Neurobiol. 26:1319.
  • Kocher, T. D., J. A. Conroy, K. R. McKaye, J. R. Stauffer, and S. F. Lockwood. 1995. Evolution of NADH dehydrogenase subunit 2 in East African cichlid fish. Mol. Phylogenet. Evol. 4:420432.
  • Langerhans, R. B. 2009. Trade-off between steady and unsteady swimming underlies predator-driven divergence in Gambusia affinis. J. Evol. Biol. 22:10571075.
  • Langerhans, R. B., and T. J. DeWitt. 2004. Shared and unique features of evolutionary diversification. Am. Nat. 164:335349.
  • Langerhans, R. B., M. Gifford, and E. Joseph. 2007. Ecological speciation in Gambusia fishes. Evolution 61:20562074.
  • Larkin, M. A., G. Blackshields, N. P. Brown, R. Chenna, P. A. McGettigan, H. McWilliam, F. Valentin, I. M. Wallace, A. Wilm, R. Lopez, et al. 2007. Clustal W and Clustal X version 2.0. Bioinformatics 23:29472948.
  • Lovatt Evans, C. 1967. The toxicity of hydrogen sulphide and other sulphides. Q. J. Exp. Physiol. 52:231248.
  • Lowry, D. B., R. C. Rockwood, and J. H. Willis. 2008. Ecological reproductive isolation of coast and inland races of Mimulus guttatus. Evolution 62:21962214.
  • Mani, G. S., and B. C. Clarke. 1990. Mutational order: a major stochastic process in evolution. Proc. R. Soc. Lond. B 240:2937.
  • Marcia, M., U. Ermler, G. Peng, and H. Michel. 2009. The structure of Aquifex aeolicus sulfide:quinone oxidoreductatse, a basis to understand sulfide detoxification and respiration. Proc. Natl. Acad. Sci. USA 106:96259630.
  • Mateos, M., O. I. Sanjur, and R. C. Vrijenhoek. 2002. Historical biogeography of the livebearing fish genus Poeciliopsis (Poeciliidae: Cyprinodontiformes). Evolution 56:972984.
  • Menzel, B. W., and R. M. Darnell. 1973. Systematics of Poecilia mexicana (Pisces, Poeciliidae) in Northern Mexico. Copeia 1973:225237.
  • Miller, R. R. 1966. Geographical distribution of Central American freshwater fishes. Copeia 1966:773802.
  • National Research Council. 1979. Hydrogen sulfide. Univ. Park Press, Baltimore , MD .
  • Nordlie, F. G. 2006. Physicochemical environments and tolerances of cyprinodontoid fishes found in estuaries and salt marshes of eastern North America. Rev. Fish Biol. Fish. 16:51106.
  • Nosil, P., B. Crespi, and C. Sandoval. 2002. Host-plant adaptation drives the parallel evolution of reproductive isolation. Nature 417:440443.
  • Ornelas-Garcia, C. P., O. Dominguez-Dominguez, and I. Doadrio. 2008. Evolutionary history of the fish genus Astyanax Baird & Girard (1854) (Actinopterygii, Characidae) in Mesoamerica reveals multiple morphological homoplasies. BMC Evol. Biol. 8:340.
  • Peters, N., G. Peters, J. Parzefall, and H. Wilkens. 1973. Über degenerative und konstruktive Merkmale bei einer phylogenetisch jungen Höhlenform von Poecilia sphenops (Pisces, Poeciliidae). Int. Rev. der Gesamten Hydrobiol. 58:417436.
  • Petersen, L. 1977. The effect of inhibitors on the oxygen kinetics of cytochome c oxidase. Biochim. Biophys. Acta. 460:299307.
  • Plath, M., and I. Schlupp. 2008. Parallel evolution leads to reduced shoaling behavior in two cave dwelling populations of Atlantic mollies (Poecilia mexicana, Poeciliidae, Teleostei). Environ. Biol. Fishes 82:289297.
  • Plath, M., and M. Tobler. 2010. Subterranean fishes of Mexico (Poecilia mexicana, Poeciliidae). Pp. 283332 in E.Trajano, M. E.Bichuette and B. G.Kapoor, eds. The biology of subterranean fishes. Science Publishers, Enfield , NH .
  • Plath, M., S. Hauswaldt, K. Moll, M. Tobler, F. Garcia de Leon, I. Schlupp, and R. Tiedemann. 2007a. Local adaptation and pronounced genetic differentiation in an extremophile fish, Poecilia mexicana, inhabiting a Mexican cave with toxic hydrogen sulfide. Mol. Ecol. 16:967976.
  • Plath, M., M. Tobler, R. Riesch, F. J. Garcia de Leon, O. Giere, and I. Schlupp. 2007b. Survival in an extreme habitat: the role of behaviour and energy limitation. Naturwissenschaften 94:991996.
  • Plath, M., C. Hermann, R. Schröder, R. Riesch, M. Tobler, F. J. Garcia de Leon, I. Schlupp, and R. Tiedemann. 2010a. Locally adapted fish populations maintain small-scale genetic differentiation despite perturbation by a catastrophic flood event. BMC Evol. Biol. 10:256.
  • Plath, M., R. Riesch, A. Oranth, J. Dzienko, N. Karau, A. Schiessl, S. Stadler, A. Wigh, C. Zimmer, L. Arias-Rodriguez, et al. 2010b. Complementary effects of natural and sexual selection against immigrants maintains differentiation between locally adapted fish. Naturwissenschaften 97:769774.
  • Posada, D. 2008. jModelTest: phylogenetic model averaging. Mol. Biol. Evol. 25:12531256.
  • Price, T., I. J. Lovette, E. Bermingham, H. L. Gibbs, and A. D. Richman. 2000. The imprint of history on North American and Asian warblers. Am. Nat. 156:354367.
  • Ptacek, M. B. 2002. Patterns of inheritance of mating signals in interspecific hybrids between sailfin and shortfin mollies (Poeciliidae: Poecilia: Mollienesia). Genetica 116:329342.
  • Rambaut, A., and A. J. Drummond. 2007. Tracer v1.4. Available from http://beast.bio.ed.ac.uk/Tracer.
  • Reiffenstein, R., W. Hulbert, and S. Roth. 1992. Toxicology of hydrogen sulfide. Annu. Rev. Pharmacool. Toxicol. 1992:109134.
  • Richmond, J. Q., and T. W. Reeder. 2002. Evidence for parallel ecological speciation in scincid lizards of the Eumeces skiltonianus species group (Squamata : Scincidae). Evolution 56:14981513.
  • Ricklefs, R. E., and D. Schluter. 1993. Species diversity: regional and historical influences. Pp. 350363 in R. E.Ricklefs and D.Schluter, eds. Species diversity in ecological communities. University of Chicago Press, Chicago , IL .
  • Riesch, R., M. Plath, and I. Schlupp. 2010. Toxic hydrogen sulfide and dark caves: life-history adaptations in a livebearing fish (Poecilia mexicana, Poeciliidae). Ecology 91:14941505.
  • Roast, S., and M. Jones. 2003. Morphometrics and gill function in Gammarus duebeni (Peracarida: Amphipoda) inhabiting a sewage treatment works. Mar. Ecol. Prog. Ser. 260:189194.
  • Rohlf, F. 2004. tpsDig. Available from http://life.bio.sunysb.edu/morph/ (accessed June 30, 2010).
  • Rohlf, F. 2005. tpsRegr. Available from http://life.bio.sunysb.edu/morph/ (accessed June 30, 2010).
  • Rohlf, F. 2007. tpsRelw. Available from http://life.bio.sunysb.edu/morph/ (accessed June 30, 2010).
  • Ronquist, F., and J. P. Huelsenbeck. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:15721574.
  • Rosales Lagarde, L., P. J. Boston, A. Campbell, and K. W. Stafford. 2006. Possible structural connection between Chichón Volcano and the sulfur-rich springs of Villa Luz Cave (a. k. a. Cueva de las Sardinas), Southern Mexico. Assoc. Mexican Cave Stud. Bull. 19:177184.
  • Rosen, D., and R. Bailey. 1963. The poeciliid fishes (Cyprinodontiformes), their structure, zoogeography and systematics. Bull. Am. Mus. Nat. Hist. 126:1176.
  • Rosenthal, G. G., X. F. de la Rosa Reyna, S. Kazianis, M. J. Stephens, D. C. Morizot, M. J. Ryan, and F. J. García de León. 2003. Dissolution of sexual signal complexes in a hybrid zone between the swordtails Xiphophorus birchmanni and Xiphophorus malinche (Poeciliidae). Copeia 2003:299307.
  • Rundle, H. D., and P. Nosil. 2005. Ecological speciation. Ecol. Lett. 8:336352.
  • Rundle, H. D., L. Nagel, J. Boughman, and D. Schluter. 2000. Natural selection and parallel speciation in sympatric sticklebacks. Science 287:306308.
  • Russell, S. T., and A. E. Magurran. 2006. Intrinsic reproductive isolation between Trinidadian populations of the guppy, Poecilia reticulata. J. Evol. Biol. 19:12941303.
  • Ryan, P., P. Bloomer, C. Moloney, T. Grant, and W. Delport. 2007. Ecological speciation in south Atlantic island finches. Science 315:14201422.
  • Schluter, D. 2000. The ecology of adaptive radiation. Oxford Univ. Press, Oxford .
  • Schluter, D. 2009. Evidence for ecological speciation and its alternative. Science 323:737741.
  • Schluter, D., and L. M. Nagel. 1995. Parallel speciation by natural selection. Am. Nat. 146:292301.
  • Schmidt, T., J. Bielawski, and J. Gold. 1998. Molecular phylogenetics and evolution of the cytochrome b gene in the cyprinid genus Lythrurus (Actinopterygii: Cypriniformes). Copeia 1998:1422.
  • Shahak, Y., and G. Hauska. 2008. Sulfide oxidation from cyanobacteria to humans: sulfide-quinone oxidoreductase (SQR). Pp. 319335 in R.Hell, C.Dahl, D. B.Knaff and L.T, eds. Advances in photosynthesis and respiration. Springer, Heidelberg .
  • Shimodaira, H. 2002. An approximately unbiased test of phylogenetic tree selection. Syst. Biol. 51:492508.
  • Shimodaira, H., and M. Hasegawa. 2001. CONSEL: for assessing the confidence of phylogenetic tree selection. Bioinformatics 17:12461247.
  • Stamatakis, A. 2006. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22:26883690.
  • Stamatakis, A. 2008. A rapid bootstrap algorithm for the RAxML web servers. Syst. Biol. 57:758771.
  • Stapley, J., J. Reger, P. G. D. Feulner, C. Smadja, J. Galindo, R. Ekblom, C. Bennison, A. D. Ball, A. P. Beckerman, and J. Slate. 2010. Adaptation genomics: the next generation. Trends Ecol. Evol. 25:705712.
  • Steindachner, F. 1863. Beiträge zur Kentniss der Sciaenoiden Brasiliens und der Cyprinodonten Mejicos. Sitzungsberichte der Mathematisch-Naturwissenschaftlichen Cl der Kaiserlichen Akad. der Wiss. 48:162185.
  • Strecker, U., V. H. Faundez, and H. Wilkens. 2004. Phylogeography of surface and cave Astyanax (Teleostei) from Central and North America based on cytochrome b sequence data. Mol. Phylogenet. Evol. 33:469481.
  • Swofford, D. 1998. PAUP*: phylogenetic analysis using parsimony (and other methods). Sinauer Associates, Sunderland , MA .
  • Szabo, C. 2007. Hydrogen sulphide and its therapeutic potential. Nat. Rev. Drug Discovery 6:917935.
  • Tavaré, S. 1986. Some probabilistic statistical problems in the analysis of DNA sequences. Lect. Mathematics Life Sci. 17:5786.
  • Theissen, U., M. Hoffmeister, M. Grieshaber, and W. Martin. 2003. Single eubacterial origin of eukaryotic sulfide:quinone oxidoreductase, a mitochondrial enzyme conserved from the early evolution of eukaryotes during anoxic and sulfidic times. Mol. Biol. Evol. 20:15641574.
  • Thibert-Plante, X., and A. P. Hendry. 2009. Five questions on ecological speciation addressed with individual-based simulations. J. Evol. Biol. 22:109123.
  • Timmerman, C. M., and L. J. Chapman. 2004. Hypoxia and interdemic variation in Poecilia latipinna. J. Fish Biol. 65:635650.
  • Tobler, M., and M. Plath. 2011. Living in extreme habitats. Pp. 120127 in J.Evans, A.Pilastro and I.Schlupp, eds. Ecology and evolution of poeciliid fishes. Univ. of Chicago Press, Chicago .
  • Tobler, M., I. Schlupp, K. Heubel, R. Riesch, F. J. Garcia de Leon, O. Giere, and M. Plath. 2006. Life on the edge: hydrogen sulfide and the fish communities of a Mexican cave and surrounding waters. Extremophiles 10:577585.
  • Tobler, M., T. J. DeWitt, I. Schlupp, F. J. Garcia de Leon, R. Herrmann, P. Feulner, R. Tiedemann, and M. Plath. 2008a. Toxic hydrogen sulfide and dark caves: phenotypic and genetic divergence across two abiotic environmental gradients in Poecilia mexicana. Evolution 62:26432649.
  • Tobler, M., R. Riesch, F. J. Garcia de Leon, I. Schlupp, and M. Plath. 2008b. Two endemic and endangered fishes, Poecilia sulphuraria (Alvarez, 1948) and Gambusia eurystoma Miller, 1975 (Poeciliidae, Teleostei), as only survivors in a small sulfidic habitat. J. Fish Biol. 72:523533.
  • Tobler, M., R. Riesch, C. M. Tobler, and M. Plath. 2009a. Compensatory behaviour in response to sulfide-induced hypoxia affects time budgets, feeding efficiency, and predation risk. Evol. Ecol. Res. 11:935948.
  • Tobler, M., R. Riesch, C. M. Tobler, T. Schulz-Mirbach, and M. Plath. 2009b. Natural and sexual selection against immigrants maintains differentiation among micro-allopatric populations. J. Evol. Biol. 22:22982304.
  • Van Dover, C. L. 2000. The ecology of deep-sea hydrothermal vents. Princeton Univ. Press, Princeton , NJ .
  • Via, S., A. C. Bouck, and S. Skillman. 2000. Reproductive isolation between divergent races of pea aphids on two hosts. II. Selection against migrants and hybrids in the parental environments. Evolution 54:16261637.
  • Whitehead, A., D. A. Triant, D. Champlin, and D. Nacci. 2010. Comparative transcriptomics implicates mechanisms of evolved pollution tolerance in a killifish populations. Mol. Ecol. 19:51865203.
  • Wolf, J. B. W., J. Lindell, and N. Backström. 2010. Speciation genetics: current status and evolving approaches. Philos. Trans. R. Soc. B 365:17171733.
  • Wood, T. E., J. M. Burke, and L. H. Rieseberg. 2005. Parallel genotypic adaptation: when evolution repeats itself. Genetica 123:157170.
  • Yang, Z. 2006. Computational molecular evolution. Oxford Univ. Press, New York , NY .
  • Zwickl, D. J. 2006. Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion. Univ. of Texas at Austin, Austin , TX .