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Appendix S1. Results from all parameter combinations.

Appendix S2. Brownian motion models.

Appendix S3. Recovery of fit.

Figure S1. The fit of the model SRD as a function of input slope and intercept values.

Figure S2. A version of Figure 3 in the main text, based on the Brownian motion model.

Figure S3. A version of figure 4 in the main text, based on the Brownian motion model.

Figure S4. A version of figure 5 in the main text, based on the Brownian motion model.

Figure S5. The estimated slopes and intercepts of “Jablonski plots” fitted to simulated ancestor-descendant relationships, plotted against the true slope and intercept values in the model.

Figure S6. The relationships in the log-space model.

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