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Figure S1. Distribution of harvesting dates for the common garden experiment.

Figure S2. An example of population structure correction.

Figure S3. Amino acid alignment of exon 1 of DOG1.

Table S1. Primers used to amplify and sequence the fragments for SNP discovery.

Table S2. Primer sequences used in the pyrosequencing assays.

Table S3. Minimum MSD values and their corresponding T values for different traits and samples.

Table S4. Polymorphic positions in the observed DOG1 haplotypes.

Table S5. Population means and genetic variation within populations for seed dormancy.

Table S6. Relationship between several environmental variables and seed dormancy (D25).

Table S7. Relationship between other phenotypic traits and summer precipitation.

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