Figure S1. The relationship between VAB and SN number and diameter in Los Sabinos cavefish, surface fish, and the F1 progeny of a surface fish × cavefish cross scatter plots showing the relationship between the SN number (A), diameter (B), and VAB, measured as the square root of NOA.

Figure S2. A model for the generation of disparity between mtDNA and nDNA by a paternal genetic effect on an adaptive behavior.

Figure S3. Probabilities for fixation of surface fish mtDNA in a cavefish population using population size and the number of introgressed surface fish as parameters.

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