EVIDENCE OF ADAPTATION FROM ANCESTRAL VARIATION IN YOUNG POPULATIONS OF BEACH MICE
Article first published online: 4 MAY 2012
© 2012 The Author(s). Evolution© 2012 The Society for the Study of Evolution.
Volume 66, Issue 10, pages 3209–3223, October 2012
How to Cite
Domingues, V. S., Poh, Y.-P., Peterson, B. K., Pennings, P. S., Jensen, J. D. and Hoekstra, H. E. (2012), EVIDENCE OF ADAPTATION FROM ANCESTRAL VARIATION IN YOUNG POPULATIONS OF BEACH MICE. Evolution, 66: 3209–3223. doi: 10.1111/j.1558-5646.2012.01669.x
- Issue published online: 1 OCT 2012
- Article first published online: 4 MAY 2012
- Accepted manuscript online: 17 APR 2012 01:40PM EST
- Received October 18, 2011 Accepted March 26, 2012
Table S1. Confusion matrix showing genotype call accuracy for quality cutoffs used to generate the two datasets.
Table S2. Demographic parameters inferred from each of the five beach mouse subspecies, using a second mainland population (FL-2) as the ancestral population.
Figure S1. ROC curves of the four genotype quality metrics (quality-by-depth, QD; site quality, QUAL; mapped read depth, DP; and genotype quality, GQ).
Figure S2. Results of Structure analysis performed using genome-wide SNP data (N = 2236 SNPs).
Figure S3. Genetic variation in a 5-kb region including Mc1r and surrounding regions in SRIBM (fixed for the derived mutation in Mc1r) and a mainland population.
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