ADAPTATION AND MALADAPTATION IN SELFING AND OUTCROSSING SPECIES: NEW MUTATIONS VERSUS STANDING VARIATION
Article first published online: 7 SEP 2012
No claim to original U.S. government works.
Volume 67, Issue 1, pages 225–240, January 2013
How to Cite
Glémin, S. and Ronfort, J. (2013), ADAPTATION AND MALADAPTATION IN SELFING AND OUTCROSSING SPECIES: NEW MUTATIONS VERSUS STANDING VARIATION. Evolution, 67: 225–240. doi: 10.1111/j.1558-5646.2012.01778.x
- Issue published online: 4 JAN 2013
- Article first published online: 7 SEP 2012
- Accepted manuscript online: 18 AUG 2012 01:20AM EST
- Received March 28, 2012, Accepted July 12, 2012
- 1970. Handbook of mathematical functions. Dover, New York . , and .
- 1955. Self-compatibility and establishment after “long-distance” dispersal. Evolution 9:347–348.
- 2008. Adaptation from standing genetic variation. Trends Ecol. Evol. 23:38–44. , and .
- 2011. Demographic signatures accompanying the evolution of selfing in Leavenworthia alabamica. Mol. Biol. Evol. 28:1717–1729. , , and .
- 1992. Effects of partial inbreeding on fixation rates and variation of mutant genes. Genetics 131:493–507. , and .
- 1992. Evolutionary rates in partially self-fertilizing species. Am. Nat. 140:126–148.
- 1993a. The effect of deleterious mutations on neutral molecular variation. Genetics 134:1289–1303. , , and .
- 2006. Evolution of plant breeding systems. Curr. Biol. 16:R726–R735.
- 1995. Quantitative genetics in plants: the effect of the breeding system on genetic variability. Evolution 49:911–920. , and .
- 1993b. Mutation accumulation in finite outbreeding and inbreeding populations. Genet. Res. 61:39–56. , , and .
- 2008. Patterns of molecular evolution in Caenorhabditis preclude ancient origins of selfing. Genetics 178:2093–2104. , , and .
- 1876. The different forms of flowers on plants of the same species. John Murray, London .
- 1878. The effects of cross and self-fertilization in the vegetal kingdom. John Murray, London . .
- 2002. Evolution, consequences and future of plant and animal domestication. Nature 418:700–707.
- 2010. Standing variation and new mutations both contribute to a fast response to selection for flowering time in maize inbreds. BMC Evol. Biol. 10:2. , , , , , , , , and .
- 2010. An integrative test of the dead-end hypothesis of selfing evolution in Triticeae (poaceae). Evolution 64:2855–2872. , , , , , , and .
- 1941. Average excess and average effect of a gene substitution. Ann. Eug. 11:53–63.
- 2002. Minor quantitative trait loci underlie floral traits associated with mating system divergence in Mimulus. Evolution 56:2138–2155. , , and .
- 2009. Recent speciation associated with the evolution of selfing in Capsella. Proc. Natl. Acad. Sci. USA 106:5241–5245. , , , , , and .
- 2007. Mating systems and the efficacy of selection at the molecular level. Genetics 177:905–916.
- 2012. Extinction and fixation times with dominance and inbreeding. Theor. Popul. Biol. 81:310–316. .
- 2009. A comparative view of the evolution of grasses under domestication. New Phytol. 183:273–290. , and .
- 2012. Genome evolution in outcrossing versus selfing versus asexual species. Methods Mol. Biol. 855:311–335. , and .
- 2010. Species selection maintains self-incompatibility. Science 330:493–495. , , , , , and .
- 2006. The genetic basis of floral traits associated with mating system evolution in Leptosiphon (Polemoniaceae): an analysis of quantitative trait loci. Evolution 60:491–504. , , and .
- 2009. Recent speciation of Capsella rubella from Capsella grandiflora, associated with loss of self-incompatibility and an extreme bottleneck. Proc. Natl. Acad. Sci. USA 106:5246–5251. , , , , , , and .
- 1927. A mathematical theory of natural and artificial selection, part V: selection and mutation. Proc. Camb. Phil. Soc. 28:838–844.
- 2008. Mating system and recombination affect molecular evolution in four Triticeae species. Genet. Res. 90:97–109. , , , , , , , and .
- 2005. Soft sweeps: molecular population genetics of adaptation from standing genetic variation. Genetics 169:2335–2352. , and .
- 2006. The distribution of plant mating systems: study bias against obligately outcrossing species. Evolution 60:1098–1103. , and .
- 2006. Ancient polymorphism reveals unidirectional breeding system shifts. Proc. Natl. Acad. Sci. USA 103:1359–1363. , , and .
- 2008. Loss of self-incompatibility and its evolutionary consequences. Int. J. Plant Sci. 169:93–104. , , and .
- 2002. A metapopulation perspective on genetic diversity and differentiation in partially self-fertilizing plants. Evolution 56:2368–2373.
- 2003. Early allelic selection in maize as revealed by ancient DNA. Science 302:1206–1208. , , , , , , and .
- 2006. Animals mix it up too: the distribution of self-fertilization among hermaphroditic animals. Evolution 60:1816–1824. , and .
- 1962. On the probability of fixation of mutant genes in a population. Genetics 47:713–719.
- 1980. Average time until fixation of a mutant allele in a finite population under continued mutation pressure: studies by analytical, numerical and pseudo-sampling methods. Proc. Natl. Acad. Sci. USA 77:522–526. .
- 1983. The neutral theory of molecular evolution. Cambridge Univ. Press, Cambridge , U.K . .
- 1969. The average number of generations until fixation of a mutant gene in a finite population. Genetics 61:763–771. , and .
- 1985. The evolution of self-fertilization and inbreeding depression in plants. I. Genetic models. Evolution 39:24–40. , and .
- 1995. Mutational meltdowns in sexual populations. Evolution 49:1067–1080. , , and .
- 2011. Fitness landscapes: an alternative theory for the dominance of mutation. Genetics 189:923–937. , , and .
- 1974. The hitch-hiking effect of a favourable gene. Genet Res. 23:23–35. , and .
- 2000. Linkage disequilibrium, gene trees and selfing: an ancestral recombination graph with partial self-fertilization. Genetics 154:923–929.
- 1997. The coalescent process with selfing. Genetics 146:1185–1195. , and
- 2010. The population genetics of beneficial mutations. Philos. Trans. R. Soc. Lond. B Biol. Sci. 365:1195–1201.
- 2001. Haldane's sieve and adaptation from the standing genetic variation. Genetics 157:875–884. , and .
- 2008. Population extinction and the genetics of adaptation. Am. Nat. 172:160–169. , and .
- 1997. The probability of fixation in populations of changing size. Genetics 146:723–733. , and .
- 1987. On the theory of partially inbreeding finite populations. I. Partial selfing. Genetics 117:353–360.
- 1992. On the theory of partially inbreeding finite populations. III. Fixation probabilities under partial selfing when heterozygotes are intermediate in viability. Genetics 131:979–985. , and .
- 2010. The genetics of human adaptation: hard sweeps, soft sweeps, and polygenic adaptation. Curr. Biol. 20:R208–R215. , , and .
- 2011. Reduced efficacy of natural selection on codon usage bias in selfing Arabidopsis and Capsella species. Genome Biol. Evol. 3:868–880. , , , , and .
- 2011. Cereal domestication and evolution of branching: evidence for soft selection in the Tb1 orthologue of pearl millet (Pennisetum glaucum[L.] R. Br.). PLoS One 6:e22404. , , , , , , , and .
- 2003. Selection and drift in subdivided populations: a straightforward method for deriving diffusion approximations and applications involving dominance, selfing and local extinctions. Genetics 165:2153–2166. , and .
- 1991. Intraspecific variation in population gene diversity and effective population size correlates with the mating system in plants. Proc. Natl. Acad. Sci. USA 88:4494–4497. , and .
- 2011. The selfing syndrome: a model for studying the genetic and evolutionary basis of morphological adaptation in plants. Ann. Bot. 107:1433–1443. , and .
- 2011. Genetics, evolution, and adaptive significance of the selfing syndrome in the genus Capsella. Plant Cell 23:3156–3171. , , , , , , and .
- 2010. Genome-wide evidence for efficient positive and purifying selection in Capsella grandiflora, a plant species with a large effective population size. Mol. Biol. Evol. 27:1813–1821. , , , and .
- 2012. Genetic architecture and adaptive significance of the selfing syndrome in Capsella. Evolution 5:1360–1374. , , , , and .
- 1957. Self fertilization and population variability in higher plants. Am. Nat. 91:337–354.
- 1974. Flowering plants. Evolution above the species level. The Belknap Press of Harvad Univ. Press, Cambridge, Massachusetts . .
- 2001. Is self-fertilization an evolutionary deed end? Revisiting an old hypothesis with genetic theories and a macroevolutionary approach. Am. J. Bot. 88:1143–1150. , and .
- 2011. On the fixation process of a beneficial mutation in a variable environment. Genetics 188:915–930. , and .
- 2002. Extinction time and age of an allele in a large finite population. Theor. Popul. Biol. 61:311–318. , and .
- 2007. Major regulatory genes in maize contribute to standing variation in teosinte (Zea mays ssp. parviglumis). Genetics 177:2349–2359. , , , , , , , and .
- 1996. The Mathematica book. Cambridge Univ. Press, Cambridge , U.K .
- 2002. Rates and patterns of molecular evolution in inbred and outbred Arabidopsis. Mol. Biol. Evol. 19:1407–1420. , , and .
- 2000. Domestication of plants in the old world. Oxford Univ. Press, Oxford , U.K . , and .