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References

  • 1
    Wood, P.M. Nitrification as a bacterial energy source, in: J.I. Prosser (Ed.), Nitrification, IRL Press, Oxford/Washington, DC, p. 99.
  • 2
    Woese, C.R., Weisburg, W.G., Pasteur, B.J., Hahn, C.M., Tanner, R.S., Krieg, N.R., Koops, H.-P., Harms, H. and Stackebrandt, E. (1984) The phylogeny of purple bacteria: the beta subdivision. System. Appl. Microbiol. 5, 327336.
  • 3
    Macke, T.J., Ludwig, W. and Stackebrandt, E. (1984) The phylogeny of purple bacteria: the gamma subdivision. System. Appl. Microbiol. 6, 2533.
  • 4
    Head, I.M., Hiorns, W.D., Embley, T.M., McCarthy, A.J. and Saunders, J.R. (1993) The phylogeny of autotrophic ammonia-oxidising bacteria as determined by analysis of 16S ribosomal RNA gene sequences. J. Gen. Microbiol. 139, 11471153.
  • 5
    Teske, A., Regan, J.M., Toze, S., Rittman, B.E. and Stahl, D.A. (1994) Evolutionary relationships among ammonia and nitrite-oxidizing bacteria. J. Bacteriol. 176, 66236630.
  • 6
    McCaig, A.E., Embley, T.M. and Prosser, J.I. (1994) Molecular analysis of enrichment cultures of marine ammonia-oxidisers. FEMS Microbiol. Lett. 120, 363368.
  • 7
    Stehr, G., Bottcher, B., Dittberner, P., Rath, G. and Koops, H.-P. (1995) The ammonia-oxidizing nitrifying populations of the River Elbe estuary. FEMS Microbiol. Ecol. 17, 177186.
  • 8
    Utåker, J.B., Bakken, L., Jiang, Q.Q. and Nes, I.F. (1995) Phylogenetic analysis of seven new isolates of ammonia-oxidizing bacteria based on 16S rRNA gene sequences. System. Appl. Microbiol. 18, 549559.
  • 9
    Stephen, J.R., McCaig, A.E., Smith, Z., Prosser, J.I. and Embley, T.M. (1996) Molecular diversity of soil and marine 16S rRNA gene sequences related to β-subgroup ammonia-oxidizing bacteria. Appl. Environ. Microbiol. 62, 41474154.
  • 10
    Hiorns, W.D., Hastings, R.C., Head, I.M., McCarthy, A.J., Saunders, J.R., Pickup, R.W. and Hall, G.H. (1995) Amplification of 16S ribosomal RNA genes of the autotrophic ammonia-oxidising bacteria demonstrates the ubiquity of nitrosospiras in the environment. Microbiology 141, 27932800.
  • 11
    Voytek, M.A. and Ward, B.B. (1995) Detection of ammonia-oxidizing bacteria of the beta-subclass of the class Proteobacteria in aquatic samples with the PCR. Appl. Environ. Microbiol. 61, 14441450.
  • 12
    Wagner, M., Rath, G., Amann, R., Koops, H.-P. and Schleifer, K.-H. (1995) In situ identification of ammonia-oxidizing bacteria. Syst. Appl. Microbiol. 18, 251264.
  • 13
    Mobarry, B.K., Wagner, M., Urbain, V., Rittman, B.E. and Stahl, D.A. (1996) Phylogenetic probes for analyzing abundance and spatial organization of nitrifying bacteria. Appl. Environ. Microbiol. 61, 21562162.
  • 14
    McTavish, H., Fuchs, J.A. and Hooper, A.B. (1993) Sequence of the gene coding for ammonia monooxygenase in Nitrosomonas europaea. J. Bacteriol. 175, 24362444.
  • 15
    Holmes, A.J., Costello, A., Lidstrom, M.E. and Murrell, J.C. (1995) Evidence that particulate methane monooxygenase and ammonia monooxygenase may be evolutionarily related. FEMS Microbiol. Lett. 132, 203208.
  • 16
    Klotz, M.G. and Norton, J.M. (1994) Sequence of the ammonia monooxygenase subunit A-encoding gene from Nitrosospira sp. NpAV. Direct GenBank submission, accession No. U20644.
  • 17
    Klotz, M.G. and Norton, J.M. (1995) Nucleotide sequence of the gene encoding ammonia monooxygenase (amoA) from Nitrosospira multiformis (=Nitrosolobus multiformis). Direct GenBank submission, accession No. U15733.
  • 18
    Sinigalliano, C.D., Kuhn, D.N. and Jones, R.D. (1995) Amplification of the amoA gene from diverse species of ammonia-oxidizing bacteria and from an indigenous bacterial population from seawater. Appl. Environ. Microbiol. 61, 27022706.
  • 19
    Amann, R.I., Ludwig, W. and Schleifer, K.-H. (1995) Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev. 59, 143169.
  • 20
    Wickramasinghe, K.N., Rodgers, G.A. and Jenkinson, D.S. (1985) Transformations of nitrogen fertilizers in soil. Soil Biol. Biochem. 17, 625630.
  • 21
    Blouin, M., Bisaillon, J.-G., Beaudet, R. and Ishaque, M. (1989) Nitrification of swine waste. Can. J. Microbiol. 36, 273278.
  • 22
    St-Arnaud, S., Bisaillon, J.-G. and Beaudet, R. (1991) Microbiological aspects of ammonia-oxidation of swine waste. Can. J. Microbiol. 37, 918923.
  • 23
    Watson, S.W. and Mandel, M. (1971) Comparisons of the morphology and deoxyribonucleic acid components of 27 strains of nitrifying bacteria. J. Bacteriol. 107, 563569.
  • 24
    Costantini, E.A.C. and Spallacci, P. (1987) Variazioni pedologiche e risposta agronomica di alcuni colture irrigue e asciutte nella bassa pianura padana. Annali ISSDS, Firenze XVIII, 75–88.
  • 25
    Bruce, K.D., Hiorns, W.D., Hobman, J.L., Osborne, A.M., Strike, P. and Ritchie, D.A. (1992) Amplification of DNA from native populations of soil bacteria by using the polymerase chain reaction. Appl. Environ. Microbiol. 58, 34133416.
  • 26
    Young, C.C., Burghoff, R.L., Keim, L.G., Minak-bernero, V., Lute, J.R. and Hinton, S.M. (1993) Polyvinylpyrolidone-agarose gel electrophoresis purification of polymerase chain reaction-amplifiable DNA from soils. Appl. Environ. Microbiol. 59, 19721974.
  • 27
    Bremner, J.M. and Mulvaney, C.S. (1982) Nitrogen-total, in: A.L. Page, R.J. Miller, D.R. Keeney (Eds.), Methods of Soil Analysis, part. 2, Chemical and microbiological properties, 2nd ed., American Society of Agronomy/Soil Science Society of America, Madison, WI, USA, pp. 595–624.
  • 28
    Olsen, S.R. and Sommers, L.E. (1982) Phosphorus, in: A.L. Page, R.G. Miller, D.R. Keeney (Eds.), Methods of Soil Analysis, part 2, Chemical and microbiological properties, 2nd ed., American Society of Agronomy/Soil Science Society of America/Madison, WI, USA, pp. 403–430.
  • 29
    Edwards, U., Rogall, T., Blocker, H., Embe, M. and Bottger, E.C. (1989) Isolation and complete direct nucleotide determination of entire genes. Characterization of a gene coding for the 16S ribosomal RNA. Nucleic Acids Res. 17, 78437853.
  • 30
    Larsen, N., Olsen, G.J., Maidek, B.L., McCaughey, M.J., Overbeek, R., Macke, T.M., Marsh, T.L. and Woese, C.R. (1993) The ribosomal database project. Nucleic Acids Res. 21, 30213023.
  • 31
    Devereux, J., Haeberli, P. and Smithies, O. (1984) A comprehensive set of sequence-analysis programs for the VAX. Nucleic Acids Res. 12, 387395.
  • 32
    Hiorns, W.D. (1992) 16S ribosomal RNA-targeted probes for detection of autotrophic ammonia-oxidising bacteria. Ph.D. Thesis, University of Liverpool, UK.
  • 33
    Bjourson, A.J. and Cooper, J.E. (1992) Band-stab PCR: a simple technique for the purification of individual PCR products. Nucleic Acids Res. 20, 4675.
  • 34
    Pommerening-Roser, A., Rath, G. and Koops, H.-P. (1996) Phylogenetic diversity within the genus Nitrosomonas. Syst. Appl. Microbiol. 19, 344351.
  • 35
    Williams, S.T. (1985) Oligotrophy in soil: fact or fiction? in: M.M. Fletcher, G.D. Floodgate (Eds.), Bacteria in their Natural Environments, Academic Press, Orlando, FL, USA, pp. 81–110.
  • 36
    McCarthy, A.J. and Williams, S.T. (1992) Actinomycetes as agents of biodegradation in the environment – a review. Gene 115, 189192.
  • 37
    Belser, L.W. and Schmidt, E.L. (1978) Diversity in the ammonia-oxidizing nitrifier population of a soil. Appl. Environ. Microbiol. 36, 584588.
  • 38
    Watson, S.W., Graham, L.B., Remsen, C.C. and Volois, F.W. (1971) A lobular ammonia-oxidizing bacterium, Nitrosolobus multiformis nov. gen. nov. sp. Arch. Mikrobiol. 76, 183203.