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References

  • 1
    Myers, R.M., Fischer, S.G., Lerman, L.S. and Maniatis, T. (1985) Nearly all single base substitutions in DNA fragments joined to a GC-clamp can be detected by denaturing gradient gel electrophoresis. Nucleic Acid Res. 13, 31313145.
  • 2
    Muyzer, G., De Waal, E.C. and Uitterlinden, A.G. (1993) Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction amplified genes coding for 16S rRNA. Appl. Environ. Microbiol. 59, 695700.
  • 3
    Muyzer, G. and de Waal, E.C. (1994) Determination of the genetic diversity of microbial communities using DGGE analysis of PCR-amplified 16S rDNA. In: Microbial Mats-structure, Development and Environmental Significance (Stal, L.J. and Caumette, P. Eds.), NATO ASI Series G35, pp. 207–214. Springer, Berlin.
  • 4
    Wawer, C. and Muyzer, G. (1995) Genetic diversity of Desulfovibrio spp. in environmental samples analyzed by denaturing gradient gel electrophoresis of [NiFe] hydrogenase gene fragments. Appl. Environ. Microbiol. 61, 22032210.
  • 5
    Ferris, M.J., Muyzer, G. and Ward, D.M. (1996) Denaturing gradient gel electrophoresis profiles of 16S rRNA-defined populations inhabiting a hot spring microbial mat community. Appl. Environ. Microbiol. 62, 340346.
  • 6
    Teske, A., Wawer, C., Muyzer, G. and Ramsing, N.B. (1996) Distribution of sulfate-reducing bacteria in a stratified Fjord (Mariager Fjord, Denmark) as evaluated by most-probable-number counts and denaturing gradient gel electrophoresis of PCR-amplified ribosomal DNA fragments. Appl. Environ. Microbiol. 62, 14051415.
  • 7
    Muyzer, G., Teske, A., Wirsen, C.O. and Jannasch, H.W. (1995) Phylogenetic relationships of Thiomicrospira species and their identification in deep-sea hydrothermal vent samples by denaturing gradient gel electrophoresis of 16S rDNA fragments. Arch. Microbiol. 164, 165172.
  • 8
    Beringer, J.E. (1974) R factor transfer in Rhizobium leguminosarum. J. Gen. Microbiol. 84, 188198.
  • 9
    Lemanceau, P., Corberand, T., Gardan, L., Latour, X., Laguerre, G., Boeufgras, J.M. and Alabouvette, C. (1994) Effect of two plant species, Flax (Linum usitatissinum L.) and Tomato (Lycopersicon esculentum Mill.), on the diversity of soilborne populations of Fluorescent Pseudomonads. Appl. Environ. Microbiol. 61, 1004–1012.
  • 10
    Sambrook, J., Fritsch, E.F. and Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual, 2nd Edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
  • 11
    Higgins, D.G. and Sharp, P.M. (1988) Clustal: a package for performing multiple alignment on a micro-computer. Gene 73, 237244.
  • 12
    Lerman, L.S. and Silverstein, K. (1987) Computational simulation of DNA melting and its application to denaturing gradient gel electrophoresis. Methods Enzymol. 155, 482501.
  • 13
    Lane, D.J. (1991) 16S/23S rRNA sequencing. In: Nucleic Acid Techniques in Bacterial Systematic (Stackebrandt, E. and Goodfellow, M., Eds.), pp. 115–175. Chichester G.B.
  • 14
    Yanagi, M. and Yamasato, K. (1993) Phylogenetic analysis of the family Rhizobiaceae and related bacteria by sequencing of 16S rRNA gene using PCR and DNA sequence. FEMS Microbiol. Lett. 107, 115120.
  • 15
    Farrelly, V., Rainey, F.A. and Stackebrandt, E. (1995) Effect of genome size and rrn gene copy number on PCR amplification of 16S rRNA genes from a mixture of bacterial species. Appl. Environ. Microbiol. 61, 27982801.
  • 16
    Laguerre, G., Allard, M.R., Revoy, F. and Amarger, N. (1994) Rapid identification of Rhizobia by restriction fragment length polymorphism analysis of PCR-amplified 16S rRNA genes. Appl. Environ. Microbiol. 60, 5663.
  • 17
    Willems, A. and Collins, D. (1993) Phylogenetic analysis of Rhizobia and Agrobacteria based on 16S rRNA gene sequence. Int. J. Syst. Bacteriol. 43, 305313.
  • 18
    Amarger, N., Macheret, V. and Laguerre, G. (1997) Two new species of Rhizobium isolated from Phaseolus vulgaris nodules, Rhizobium gallicum sp. nov. and Rhizobium giardinii sp. nov. Int. J. Syst. Bacteriol., in press.
  • 19
    De Lajudie, P., Willems, A., Pot, B., Dewettinck, D., Maestrojuam, G., Neyra, M., Collins, M.D., Dreyfus, B., Kersters, K. and Gillis, M. (1994) Polyphasic taxonomy of rhizobia. Emendation of the genus Sinorhizobium and description of Sinorhizobium meliloti comb. nov., Sinorhizobium saheli sp. nov., and Sinorhizobium teranga sp. nov. Int. J. Syst. Bacteriol. 44, 715733.
  • 20
    Brusseau, G.A., Bulygine, E.S. and Hanson, R.S. (1994) Phylogenetic analysis and development of probes for differentiating methylotrophic bacteria. Appl. Environ. Microbiol. 60, 626636.
  • 21
    Skerman, V.B.D., Mc Gowan, K. and Sneath, P.H.A. (1980) Approved lists of bacterial names. Int. J. Syst. Bacteriol. 30, 225420.