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References

  • 1
    Habermehl, M.A. (1980) The Great Artesian Basin, Australia. BMR J. Aust. Geol. Geophys. 5, 938.
  • 2
    Habermehl, M.A. (1986) Regional groundwater movement, hydrochemistry and hydrocarbon migration in the Eromanga Basin. In: Contributions to the Geology and Hydrocarbon Potential of the Eromanga Basin (Gravestock, D.I., Moore, P.S. and Pitt, G.M., Eds.), pp. 353–376. Geol. Soc. Aust. Inc., Australia.
  • 3
    Mazor, E. and Nativ, R. (1994) Stagnant groundwater stored in isolated aquifers: implications related to hydraulic calculations and isotopic dating – Reply. J. Hydrol. 154, 409418.
  • 4
    Love, C., Patel, B.K.P., Nichols, P.D. and Stackebrandt, E. (1993) Desulfotomaculum australicum, sp. nov., a thermophilic sulfate-reducing bacterium isolated from the Great Artesian Basin of Australia. Syst. Appl. Microbiol. 16, 244251.
  • 5
    Andrews, K.T. and Patel, B.K.C. (1996) Fervidobacterium gondwanense sp. nov., a new thermophilic anaerobic bacterium isolated from nonvolcanically heated geothermal waters of the Great Artesian Basin of Australia. Int. J. Syst. Bacteriol. 46, 265269.
  • 6
    Redburn, A.C. and Patel, B.K.C. (1994) Desulfovibrio longreachii, sp. nov., a sulfate-reducing bacterium isolated from the Great Artesian Basin of Australia. FEMS Microbiol. Lett. 115, 3338.
  • 7
    Reysenbach, A., Wickham, G.S. and Pace, N.R. (1994) Phylogenetic analysis of the hyperthermophilic pink filament community in Octopus Spring, Yellowstone National Park. Appl. Environ. Microbiol. 60, 21132119.
  • 8
    Weller, R., Bateson, M.M., Heimbuch, B.K., Kopczynski, E.D. and Ward, D.M. (1992) Uncultivated cyanobacteria, Chloroflexus-like inhabitants, and spirochete-like inhabitants of a hot spring microbial mat. Appl. Environ. Microbiol. 58, 39643969.
  • 9
    Ward, D.M., Weller, R. and Bateson, M.M. (1990) 16S rRNA sequences reveal uncultured inhabitants of a well-studied thermal community. FEMS Microbiol. Rev. 75, 105116.
  • 10
    Bond, P.L., Hugenholtz, P., Keller, J. and Blackall, L. (1995) Bacterial community structures of phosphate and non-phosphate removing activated sludges from sequencing batch reactors. Appl. Environ. Microbiol. 61, 19101916.
  • 11
    DeLong, E.F., Franks, D.G. and Alldredge, A.L. (1993) Phylogenetic diversity of aggregate-attached vs. free-living marine bacterial assemblages. Limnol. Oceanogr. 38, 924934.
  • 12
    Fuhrman, J.A., McCallum, K. and Davis, A.A. (1993) Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific Oceans. Appl. Environ. Microbiol. 59, 12941302.
  • 13
    Haddad, A., Camacho, F., Durand, P. and Cary, S.C. (1995) Phylogenetic characterisation of the epibiotic bacteria associated with the hydrothermal vent polychaete Alvinella pompejana. Appl. Environ. Microbiol. 61, 16791687.
  • 14
    Liesack, W. and Stackebrandt, E. (1992) Occurrence of novel groups of the Domain Bacteria as revealed by analysis of genetic material isolated from an Australian terrestrial environment. J. Bacteriol. 174, 50725078.
  • 15
    Moyer, C.L., Dobbs, F.C. and Karl, D.M. (1994) Estimation of diversity and community structure through restriction fragment length polymorphism distribution analysis of Bacterial 16S rRNA genes from a microbial mat at an active, hydrothermal vent system, Loihi Seamount, Hawaii. Appl. Environ. Microbiol. 60, 871879.
  • 16
    Ruano, G., Pagliaro, E.M., Schwartz, T.R., Lamy, K., Messina, D., Gaensslen, R.E. and Lee, H.C. (1992) Heat-soaked PCR: an efficient method for DNA amplification with applications to forensic analysis. BioTechniques 13, 266274.
  • 17
    Maniatis, T., Fritsch, E.F. and Sambrook, J. (1982) Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.
  • 18
    Altschul, S.F., Gish, W., Miller, W., Myers, E.W. and Lipman, D.J. (1990) Basic local alignment search tool. J. Mol. Biol. 215, 403410.
  • 19
    Farrelly, V., Rainey, F.A. and Stackebrandt, E. (1995) Effect of genome size and rrn gene copy number on PCR amplification of 16S rRNA genes from a mixture of bacterial species. Appl. Environ. Microbiol. 61, 27982801.
  • 20
    Rainey, F.A., Ward, N., Sly, L.I.S. and Stackebrandt, E. (1994) Dependence on the taxon composition of clone libraries for PCR amplified, naturally occurring 16S rDNA, on the primer pair and the cloning system used. Experientia 50, 796797.
  • 21
    Grey, J.P. and Herwig, R.P. (1996) Phylogenetic analysis of the bacterial communities in marine sediments. Appl. Environ. Microbiol. 62, 40494059.
  • 22
    Suzuki, M.T. and Giovannoni, S.J. (1996) Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR. Appl. Environ. Microbiol. 62, 625630.
  • 23
    Liesack, W., Weyland, H. and Stackebrandt, E. (1991) Potential risks of gene amplification by PCR as determined by 16S rDNA analysis of a mixed-culture of strict barophilic bacteria. Microbiol. Ecol. 21, 191198.
  • 24
    Robison-Cox, J.F., Bateson, M.M. and Ward, D.M. (1995) Evaluation of nearest-neighbour methods for detection of chimeric small-subunit rRNA sequences. Appl. Environ. Microbiol. 61, 12401245.
  • 25
    Moyer, C.L., Dobbs, F.C. and Karl, D.M. (1995) Phylogenetic diversity of the Bacterial community from a microbial mat at an active hydrothermal vent system, Loihi Seamount, Hawaii. Appl. Environ. Microbiol. 61, 15551562.
  • 26
    Amann, R., Ludwig, W. and Schleifer, K.H. (1994) Identification of uncultured Bacteria: a challenging task for molecular taxonomists. ASM News 60, 360365.
  • 27
    Moyer, C.L., Tiedje, J.M., Dobbs, F.C. and Karl, D.M. (1996) A computer-simulated restriction fragment length polymorphism analysis of bacterial small-subunit rRNA genes: efficacy of selected tetrameric restriction enzymes for studies of microbial diversity in nature. Appl. Environ. Microbiol. 62, 25012507.
  • 28
    Rochelle, P.A., Cragg, B.A., Fry, J.C., Parkes, R.J. and Weightman, A.J. (1994) Effect of sample handling on estimation of bacterial diversity in marine sediments by 16S rRNA gene sequence analysis. FEMS Microbiol. Ecol. 15, 215226.
  • 29
    Fox, E.F., Wisotzkey, J.D. and Jurtshuk, P. (1992) How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity. Int. J. Syst. Bacteriol. 42, 166170.
  • 30
    Saul, D.J., Rodrigo, A.G., Reeves, R.A., Williams, L.C., Borges, K.M., Morgan, H.W. and Bergquist, P.L. (1993) Phylogeny of twenty Thermus isolates constructed from 16S rRNA gene sequence data. Int. J. Syst. Bacteriol. 43, 754760.
  • 31
    Olsen, G.J., Woese, C.R. and Overbeek, R. (1994) The winds of (evolutionary) change: breathing new life into microbiology. J. Bacteriol. 176, 16.
  • 32
    Zharkikh, A. and Li, W.H. (1992) Statistical properties of bootstrap estimation of phylogenetic variability from nucleotide sequences. I. Four taxa with a molecular clock. Mol. Biol. Evol. 9, 11191147.
  • 33
    Ferris, M.J., Ruff-Roberts, A.L., Kopczynski, E.D., Bateson, M.M. and Ward, D.M. (1996) Enrichment culture and microscopy conceal diverse thermophilic Synechococcus populations in a single hot spring microbial mat habitat. Appl. Environ. Microbiol. 62, 10451050.
  • 34
    Cohen, Y. (1989) Photosynthesis in cyanobacterial mats and its relation to the sulfur cycle: a model for microbial sulfur interactions. In: Microbial Mats: Physiological Ecology of Benthic Microbial Communities (Cohen, Y. and Rosenberg, E., Eds.), pp. 22–36. American Society for Microbiology, Washington, DC.
  • 35
    Lonergan, D.J., Jenter, H.L., Coates, J.D., Phillips, E.J.P., Schmidt, T.M. and Lovley, D.R. (1996) Phylogenetic analysis of dissimilatory Fe(III)-reducing bacteria. J. Bacteriol. 178, 24022408.
  • 36
    Durand, P., Reysenbach, A.-L., Prieur, D. and Pace, N. (1993) Isolation and characterisation of Thiobacillus hydrothermalis sp. nov., a mesophilic obligately chemolithotrophic bacterium isolated from a deep-sea hydrothermal vent in Fiji Basin. Arch. Microbiol. 159, 3944.
  • 37
    Denman, S., Hampson, K. and Patel, B.K.C. (1991) Isolation of strains of Thermus aquaticus from the Australian Artesian Basin and a simple and rapid procedure for the preparation of their plasmids. FEMS Microbiol. Lett. 82, 7378.
  • 38
    Nold, S.C. and Ward, D.M. (1995) Diverse Thermus species inhabit a single hot spring microbial mat. Syst. Appl. Microbiol. 18, 274278.
  • 39
    Huber, R., Wilharm, T., Huber, D., Trincone, A., Burggraf, S., Koenig, H., Rachel, R., Rockinger, I., Fricke, H. and Stetter, K.O. (1992) Aquifex pyrophilus gen. nov. sp. nov., represents a novel group of marine hyperthermophilic hydrogen-oxidising bacteria. Syst. Appl. Microbiol. 15, 340351.
  • 40
    Stackebrandt, E., Liesack, W. and Goebel, B.M. (1993) Bacterial diversity in a soil sample from a subtropical Australian environment as determined by 16S rDNA analysis. J. Fed. Am. Soc. Exp. Biol. 7, 232236.
  • 41
    Nold, S.C., Kopczynski, E.D. and Ward, D.M. (1996) Cultivation of aerobic chemoorganotrophic proteobacteria and gram-positive bacteria from a hot spring microbial mat. Appl. Environ. Microbiol. 62, 39173921.
  • 42
    Santegoeds, C.M., Nold, S.C. and Ward, D.M. (1996) Denaturing gradient gel electrophoresis used to monitor the enrichment culture of aerobic chemoorganotrophic bacteria from a hot spring cyanobacterial mat. Appl. Environ. Microbiol. 62, 39223928.