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References

  • 1
    Ward, D.M., Weller, R. and Bateson, M.M. (1990) 16S rRNA sequences reveal numerous uncultured microorganisms in a natural community. Nature 345, 6365.
  • 2
    Torsvik, V., Goksoyr, J. and Daae, F.L. (1990) High diversity of DNA of soil bacteria. Appl. Environ. Microbiol. 56, 782787.
  • 3
    Giovannoni, S.J., Britschgi, T.B., Moyer, C.L. and Field, K.G. (1990) Genetic diversity in sargasso sea bacterioplankton. Nature 345, 6063.
  • 4
    Stackebrandt, E., Liesack, W. and Goebel, B.M. (1993) Bacterial diversity in a soil sample from a subtropical Australian environment as determined by 16S rDNA analysis. FASEB J. 7, 232236.
  • 5
    Moyer, C.L., Dobbs, F.C. and Karl, D.M. (1994) Estimation of diversity and community structure through restriction fragment length polymorphism distribution analysis of bacterial 16S rRNA genes from a microbial mat at an active, hydrothermal vent system, Loihi Seamount, Hawaii. Appl. Environ. Microbiol. 60, 871879.
  • 6
    Muyzer, G., de Waal, E.C. and Uitterlinden, A.G. (1993) Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl. Environ. Microbiol. 59, 695700.
  • 7
    Reysenbach, A.-L., Giver, L.J., Wickham, G.S. and Pace, N.R. (1992) Differential amplification of rRNA genes by polymerase chain reaction. Appl. Environ. Microbiol. 58, 34173418.
  • 8
    Wilson, K.H. and Blitchington, R.B. (1996) Human colonic biota studied by ribosomal DNA sequence analysis. Appl. Environ. Microbiol. 62, 22732278.
  • 9
    Chandler, D.P., Fredrickson, J.K. and Brockman, F.J. (1997) Effect of PCR template concentration on the composition and distribution of total community 16S rDNA clone libraries. Mol. Ecol. 6, 475482.
  • 10
    Møller, S., Pedersen, A.R., Poulsen, L.K., Arvin, E. and Molin, S. (1996) Activity and three-dimensional distribution of toluene degrading Pseudomonas putida in a multispecies biofilm assessed by quantitative in situ hybridization and scanning confocal laser microscopy. Appl. Environ. Microbiol. 62, 46324640.
  • 11
    Bertani, G. (1951) Studies on lysogenesis. I. The mode of phage liberation by lysogenic Escherichia coli. J. Bacteriol. 62, 293300.
  • 12
    Grimberg, J., Maguire, S. and Belluscio, L. (1989) A simple method for the preparation of plasmid and chromosomal E. coli DNA. Nucleic Acids Res. 17, 8893.
  • 13
    Brosius, J., Palmer, M.L., Kennedy, P.J. and Noller, H.F. (1978) Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli. Proc. Natl. Acad. Sci. USA 75, 48014805.
  • 14
    Teske, A., Wawer, C., Muyzer, G. and Ramsing, N.B. (1996) Distribution of sulfate-reducing bacteria in a stratified fjord (Mariager Fjord, Denmark) as evaluated by most-probable-number counts and denaturing gradient gel electrophoresis of PCR-amplified ribosomal DNA fragments. Appl. Environ. Microbiol. 62, 14051415.
  • 15
    Don, R.H., Cox, P.T., Wainwright, B.J., Baker, K. and Mattick, J.S. (1991) ‘‘Touchdown’’ PCR to circumvent spurious priming during gene amplification. Nucleic Acids Res. 19, 4008.
  • 16
    Lane, D.J. (1991) 16S/23S rRNA sequencing. In: Nucleic Acid Techniques in Bacterial Systematics (Stackebrandt, E. and Goodfellow, M., Eds.), pp. 115–175. John Wiley and Sons, New York.
  • 17
    Altschul, S.F., Gish, W., Miller, W., Myers, E.W. and Lipmaan, D.J. (1990) Basic local alignment search tool. J. Mol. Biol. 215, 403410.
  • 18
    Farrelly, V., Rainey, F.A. and Stackebrandt, E. (1995) Effect of genome size and rrn gene copy number on PCR amplification of 16S rRNA genes from a mixture of bacterial species. Appl. Environ. Microbiol. 61, 27982801.
  • 19
    Suzuki, M.T. and Giovannoni, S.J. (1996). Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR. Appl. Environ. Microbiol. 62, 625630.
  • 20
    Pomp, D. and Medrano, J.F. (1991) Organic solvents as facilitators of polymerase chain reaction. BioTechniques 10, 5859.