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References

  • 1
    Postgate, J.R. (1984) The Sulphate-Reducing Bacteria, 2nd Edn. Cambridge University Press, Cambridge.
  • 2
    Widdel, F. (1988) Microbiology and ecology of sulfate- and sulfur-reducing bacteria. In: Biology of Anaerobic Microorganisms (Zehnder, A.J.B., Ed.) pp. 469–585. Wiley, New York, NY.
  • 3
    Jørgensen, B.B. (1978) A comparison of method for the quantification of bacterial sulfate reduction in coastal marine sediments. III. Estimation from chemical and bacteriological field data. Geomicrobiol. J. 1, 4964.
  • 4
    Gibson, G.R., Parks, R.J. and Herbert, R.A. (1987) Evaluation of viable counting procedures for the enumeration of sulfate-reducing bacteria in estuarine sediments. J. Microbiol. Methods 7, 201211.
  • 5
    Jørgensen, B.B. and Bak, F. (1991) Pathways and microbiology of thiosulfate transformations and sulfate reduction in a marine sediment (Kattegat, Denmark). Appl. Environ. Microbiol. 57, 847856.
  • 6
    Woese, C.R. (1987) Bacterial evolution. Microbiol. Rev. 51, 221271.
  • 7
    Pace, N.R., Stahl, D.A., Lane, D.J. and Olsen, G.J. (1986) The analysis of microbial populations by ribosomal RNA sequences. Adv. Microb. Ecol. 9, 155.
  • 8
    Ward, D.M., Bateson, M.M., Weller, R. and Ruff-Roberts, A.L. (1992) Ribosomal RNA analysis of microorganisms as they occur in nature. Adv. Microb. Ecol. 12, 219286.
  • 9
    Stahl, D.A. (1986) Evolution, ecology, and diagnosis: unity in variety. BioTechnology 4, 623628.
  • 10
    DeLong, E.F., Wickham, G.S. and Pace, N.R. (1989) Phylogenetic strains: ribosomal RNA-based probes for the identification of single cells. Science 243, 13601363.
  • 11
    Amann, R.I., Krumholz, L. and Stahl, D.A. (1990) Fluorescent-oligonucleotide probing of whole cells for determinative, phylogenetic, and environmental studies in microbiology. J. Bacteriol. 172, 762770.
  • 12
    Stahl, D.A., Flesher, B., Mansfield, H.R. and Montgomery, L. (1988) Use of phylogenetically based hybridization probes for studies of ruminal microbial ecology. Appl. Environ. Microbiol. 54, 10791084.
  • 13
    Olsen, G.J., Lane, D.J., Giovannoni, S.J., Pace, N.R. and Stahl, D.A. (1986) Microbial ecology and evolution: A ribosomal RNA approach. Annu. Rev. Microbiol. 40, 337365.
  • 14
    Holben, W.E., Jansson, J.K., Chelm, B.K. and Tiedje, J.M. (1988) DNA probe method for the detection of specific microorganisms in the soil bacterial community. Appl. Environ. Microbiol. 54, 703711.
  • 15
    Sambrook, J., Fritsch, E.F. and Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual, 2nd Edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
  • 16
    Tsai, Y.-L. and Olson, B.H. (1991) Rapid method for direct extraction of DNA from soil and sediments. Appl. Environ. Microbiol. 57, 10701074.
  • 17
    Moran, M.A., Torsvik, V.L., Torsvik, T. and Hodson, R.E. (1993) Direct extraction and purification of rRNA for ecological studies. Appl. Environ. Microbiol. 59, 915918.
  • 18
    Ogram, A., Sun, W., Brockman, F.J. and Fredrickson, J.K. (1995) Isolation and characterization of RNA from low-biomass deep-subsurface sediments. Appl. Environ. Microbiol. 61, 763768.
  • 19
    Purdy, K.J., Embley, T.M., Takii, S. and Nedwell, D.B. (1996) Rapid extraction of DNA and rRNA from sediments by a novel hydroxyapatite spin-column method. Appl. Environ. Microbiol. 62, 39053907.
  • 20
    Li, J.-h., Takii, S., Kotakemori, R. and Hayashi, H. (1996) Sulfate reduction in profundal sediments in Lake Kizaki, Japan. Hydrobiologia 333, 201208.
  • 21
    Widdel, F. and Bak, F. (1992) Gram-negative mesotrophic sulfate-reducing bacteria. In: The Prokaryotes: A Handbook on The Biology of Bacteria: Ecophysiology, Isolation, Identification, Application, 2nd Edn. (Balows, A., Truper, H.G., Dworkin, M., Harder, W. and Schleifer, K.-H., Eds.), pp. 3353–3378. Springer-Verlag, New York.
  • 22
    Purdy, K.J., Nedwell, D.B., Embley, T.M. and Takii, S. (1997) Use of 16S rRNA-targeted oligonucleotide probes to investigate the occurrence and selection of sulfate-reducing bacteria in response to nutrient addition to sediment slurry microcosms from a Japanese estuary. FEMS Microbiol. Ecol. 24, 221234.
  • 23
    Amann, R.I., Stromley, J., Devereux, R., Key, R. and Stahl, D.A. (1992) Molecular and microscopic identification of sulphate-reducing bacteria in multispecies biofilms. Appl. Environ. Microbiol. 58, 614623.
  • 24
    Devereux, R., Kane, M.D., Winfrey, J. and Stahl, D.A. (1992) Genus- and group-specific hybridization probes for determinative and environmental studies of sulfate-reducing bacteria. Syst. Appl. Microbiol. 15, 601609.
  • 25
    Japan Weather Association (1996) Heavy Rain. In: Japan Weather Almanac 1996 (in Japanese). The Printing Bureau, The Ministry of Finance, Tokyo.
  • 26
    Giovannoni, S.J., Britschgi, T.B., Moyer, C.L. and Field, K.G. (1990) Genetic diversity in Sargasso Sea bacterioplankton. Nature 345, 6063.
  • 27
    Devereux, R., Winfrey, M.R., Winfrey, J. and Stahl, D.A. (1996) Depth profile of sulfate-reducing bacterial ribosomal RNA and mercury methylation in an estuarine sediment. FEMS Microbiol. Ecol. 20, 2331.
  • 28
    Amann, R.I., Binder, B.J., Olson, R.J., Chisholm, S.W., Devereux, R. and Stahl, D.A. (1990) Combination of 16S rRNA-tageted oligonucleotide probers with flow cytometry for analyzing mixed microbial populations. Appl. Environ. Microbiol. 56, 19191925.
  • 29
    Raskin, L., Amann, R.I., Poulsen, L.K., Ritmann, B.E. and Stahl, D.A. (1995) Use of ribosomal RNA-based molecular probes for characterization of complex microbial communities in anaerobic biofilms. Water Sci. Technol. 31, 261272.
  • 30
    Risatti, J.B., Capman, W.C. and Stahl, D.A. (1994) Community structure of a microbial mat: The phylogenetic dimension. Proc. Natl. Acad. Sci. USA 91, 1017310177.
  • 31
    Trimmer, M., Purdy, K.J. and Nedwell, D.B. (1997) Process measurement and phylogenetic analysis of the sulfate reducing bacterial communities of two contrasting benthic sites in the upper estuary of the Great Ouse, Norfolk, UK. FEMS Microbiol. Ecol. 24, 333342.
  • 32
    Peck, H.D. (1959) The ATP dependent reduction of sulfate with hydrogen in extracts of Desulfovibrio desulfuricans. Proc. Natl. Acad. Sci. USA 45, 701708.
  • 33
    Bak, F. and Pfennig, N. (1991) Sulfate-reducing bacteria in littoral sediment of Lake Constance. FEMS Microbiol. Ecol. 85, 4352.
  • 34
    Amann, R.I., Ludwig, W. and Schleifer, K.-H. (1995) Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev. 59, 143169.
  • 35
    Maaløe, O. and Kjellgard, N.O. (1966) Control of Macromolecular Synthesis: A Study of DNA, RNA, and Protein Synthesis in Bacteria. Benjamin, New York, NY.
  • 36
    Kemp, P.F., Lee, S. and LaRoche, J. (1993) Estimating the growth rate of slowly growing marine bacteria from RNA content. Appl. Environ. Microbiol. 59, 25942601.