• 1
    de Bertoldi, M., Valdini, G. and Pera, A. (1983) The biology of composting: a review. Waste Manag. Res. 1, 157176.
  • 2
    Finstein, M.S. and Morris, M.L. (1975) Microbiology of municipal solid waste composting. Adv. Appl. Microbiol. 19, 113151.
  • 3
    Waksman, S.A., Cordon, T.C. and Hulpoi, N. (1939) Influence of temperature upon the microbiological population and decomposition processes in composts of stable manure. Soil Sci. 47, 83114.
  • 4
    Beffa, T., Blanc, M., Marilley, L., Lott Fischer, J., Lyon, P.-F. and Aragno, M. (1996) Taxonomic and metabolic microbial diversity during composting. In: The Science of Composting (de Bertoldi, M., Sequi, P., Lemmes, B. and Papi, T., Eds.), pp. 149–161. Blackie Academic and Professional, Glasgow, UK.
  • 5
    Nakasaki, K., Sasaki, M., Shoda, M. and Kubota, H. (1985) Change in microbial numbers during thermophilic composting of sewage sludge with reference to CO2 evolution rate. Appl. Environ. Microbiol. 49, 3741.
  • 6
    Strom, P.F. (1985) Effect of temperature on bacterial species diversity in thermophilic solid-waste composting. Appl. Environ. Microbiol. 50, 899905.
  • 7
    Beffa, T., Blanc, M. and Aragno, M. (1996) Obligately and facultatively autotrophic, sulfur- and hydrogen-oxidizing thermophilic bacteria isolated from hot composts. Arch. Microbiol. 165, 3440.
  • 8
    Beffa, T., Blanc, M., Lyon, P.-F., Vogt, G., Marchiani, M., Lott Fischer, J. and Aragno, M. (1996) Isolation of Thermus strains from hot composts (60 to 80°C). Appl. Environ. Microbiol. 62, 17231727.
  • 9
    Blanc, M., Marilley, L., Beffa, T., Aragno, M. (1997) Rapid identification of heterotrophic thermophilic spore-forming bacteria isolated from hot composts. Int. J. Syst. Bact. 47, 12461248.
  • 10
    Blanc, M. (1998) Biodiversité taxonomique et métabolique des communautés bactériennes hautement thermophiles dans les composts. Ph.D. dissertation. University of Neuchâtel, Switzerland.
  • 11
    Strom, P.F. (1985) Identification of thermophilic bacteria in solid-waste composting. Appl. Environ. Microbiol. 50, 906913.
  • 12
    Amann, R.I., Ludwig, W. and Schleifer, K.-H. (1995) Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev. 59, 143169.
  • 13
    Torsvik, V., Goksøyr, J. and Daae, F.L. (1990) High diversity in DNA of soil bacteria. Appl. Environ. Microbiol. 56, 782787.
  • 14
    Ward, D.M., Bateson, M.M., Weller, R. and Ruff-Roberts, A.L. (1992) Ribosomal RNA analysis of microorganisms as they occur in nature. Adv. Microbiol. Ecol. 12, 219286.
  • 15
    Fuhrman, J.A., McCallum, K. and Davis, A.A. (1993) Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific oceans. Appl. Environ. Microbiol. 59, 12941302.
  • 16
    Giovannoni, S.J., Britschgi, T.B., Moyer, C.L. and Field, K.G. (1990) Genetic diversity in Sargasso Sea bacterioplankton. Nature (Lond.) 345, 6063.
  • 17
    Bornemann, J., Skroch, P.W., O'Sullivan, K.M., Palus, J.A., Rumjanek, N.G., Jansen, J.L., Nienhuis, J. and Triplett, E.W. (1996) Molecular microbial diversity of an agricultural soil in Wisconsin. Appl. Environ. Microbiol. 62, 19351943.
  • 18
    Marilley, L., Vogt, G., Blanc, M. and Aragno, M. (1998) Bacterial diversity in the bulk soil and rhizosphere fractions of Lolium perenne and Trifolium repens as revealed by PCR profiles analysis of 16S rDNA. Plant Soil 198, 219224.
  • 19
    Moyer, C.L., Dobbs, F.C. and Karl, D.M. (1994) Estimation of diversity and community structure through restriction fragment length polymorphism distribution analysis of bacterial 16S rRNA genes from a microbiological mat at an active, hydrothermal vent system, Loihi Seamount, Hawaı¨. Appl. Environ. Microbiol. 60, 871879.
  • 20
    Rheims, H., Spröer, C., Rainey, F.A. and Stackebrandt, E. (1996) Molecular biological evidence for the occurrence of uncultured members of the actinomycete line of descent in different environments and geographical locations. Microbiology 142, 28632870.
  • 21
    Aragno, M. (1992) Thermophilic, aerobic, hydrogen-oxidizing (Knallgas) bacteria. In: The Prokaryotes (Balows, A., Trüper, H.G., Dworkin, M., Harder, W. and Schleifer, K.-H., Eds.), 2nd edn., pp. 3917–3933. Springer-Verlag, New York.
  • 22
    Schneider, S. Internet site:
  • 23
    Lee, S.-Y., Bollinger, J., Bezdicek, D. and Ogram, A. (1996) Estimation of the abundance of an uncultured soil bacterial strain by a competitive quantitative PCR method. Appl. Environ. Microbiol. 62, 37873793.
  • 24
    Tsai, Y.-L. and Olson, B.H. (1991) Rapid method for direct extraction of DNA from soil and sediments. Appl. Environ. Microbiol. 57, 10701074.
  • 25
    Birnboim, H.C. and Doly, J. (1979) A rapid alkaline extraction procedure for screening recombinant plasmid DNA. Nucleic Acids Res. 7, 15131523.
  • 26
    Sambrook, J., Fritsch, E.F. and Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory Press, New York.
  • 27
    Shannon, C.E. and Weaver, W. (1949) The mathematical theory of communications. University of Illinois Press, Urbana, IL.
  • 28
    Altschul, S.F., Madden, T.L., Schäffer, A.A., Zhang, J., Zhang, Z., Miller, W. and Lipman, D.J. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25, 33893402.
  • 29
    Williams, R.A.D. and Da Costa, M.S. (1992) The genus Thermus and related microorganisms. In: The Prokaryotes (Balows, A., Trüper, H.G., Dworkin, M., Harder, W. and Schleifer, K.-H., Eds.), 2nd edn., pp. 3745–3753. Springer-Verlag, New York.
  • 30
    Oshima, T. and Imahori, K. (1974) Description of Thermus thermophilus (Yoshida and Oshima) comb. nov., a nonsporulating thermophilic bacterium from a Japanese thermal spa. Int. J. Syst. Bacteriol. 24, 102112.
  • 31
    Sharp, R.J., Riley, P.W. and White, D. (1991) Heterotrophic thermophilic bacteria. In: Thermophilic Bacteria (Kristjansson, J.K., Ed.), pp. 19–50. CRC Press, Boca Raton, FL.
  • 32
    White, D., Sharp, R.J. and Priest, F.G. (1993) A polyphasic taxonomic study of thermophilic bacilli from a wide geographical area. Antonie van Leeuwenhoek J. Microbiol. 64, 357386.
  • 33
    Nystrand, R. (1984) Saccharococcus thermophilus gen. nov., sp. nov. isolated from beet sugar extraction. Syst. Appl. Microbiol. 5, 204219.
  • 34
    Alfredsson, G.A., Kristjansson, J.K., Hjörleifsdottir, S., and Stetter, K.O. (1988) Rhodothermus marinus, gen. nov, sp. nov., a thermophilic halophilic bacterium from submarine hotsprings in Iceland. J. Gen. Microbiol. 134, 299306.
  • 35
    Rainey, F.A., Ward, N., Sly, L.I. and Stackebrandt, E. (1994) Dependence on the taxon composition of clone libraries for PCR amplified, naturally occurring 16S rDNA, on the primer pair and the cloning system used. Experientia 50, 796797.
  • 36
    Malik, M., Kain, J., Pettigrew, C. and Ogram, A. (1994) Purification and molecular analysis of microbial DNA from compost. J. Microbiol. Methods 20, 183196.
  • 37
    Reysenbach, A.-L., Giver, L.J., Wickham, G.S. and Pace, N.R. (1992) Differential amplification of rRNA genes by polymerase chain reaction. Appl. Environ. Microbiol. 58, 34173418.
  • 38
    Hellmann, B., Zelles, L., Palojärvi, A. and Bai, Q. (1997) Emission of climate-relevant trace gases and succession of microbial communities during open-windrow composting. Appl. Environ. Microbiol. 63, 10111018.
  • 39
    Herrmann, R.F. and Shann, J.F. (1997) Microbial community changes during the composting of municipal solid waste. Microbiol. Ecol. 33, 7885.
  • 40
    Moyer, C.L., Tiejde, J.M., Dobbs, F.C. and Karl, D.M. (1996) A computer-simulated restriction fragment length polymorphism analysis of bacterial small-subunit rRNA genes: efficacy of selected tetrameric restriction enzymes for studies of microbial diversity in nature. Appl. Environ. Microbiol. 62, 25012507.
  • 41
    Dugnani, L., Wyrsch, I., Gandolla, M. and Aragno, M. (1986) Biological oxidation of hydrogen in soils flushed with a mixture of H2, CO2, O2 and N2. FEMS Microbiol. Lett. 38, 347351.
  • 42
    Miller, F.C. (1989) Matrix water potential as an ecological determinant in compost, a substrate dense system. Microb. Ecol. 18, 5971.
  • 43
    Hay, J.C. and Kuchenrither, R.D. (1990) Fundamentals and application of windrow composting. J. Environ. Eng. 116, 746763.