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References

  • [1]
    Mavingui, P, Laguerre, G, Berge, O, Heulin, T (1992) Genetic and phenotypic diversity of Bacillus polymyxa in soil and in the wheat rhizosphere. Appl. Environ. Microbiol. 58, 18941903.
  • [2]
    Latour, X, Corberand, T, Laguerre, G, Allard, F, Lemanceau, P (1996) The composition of fluorescent Pseudomonad population associated with roots is influenced by plant and soil type. Appl. Environ. Microbiol. 62, 24492456.
  • [3]
    Wayne, L.G.D, Brenner, D.J, Colwell, R.R, Grimont, P.A.D, Kandler, O, Krichevsky, M.I, Moore, L.H, Moore, W.E.C, Murray, R.G.E, Stackebrandt, E, Starr, M.P, Trüper, H.G (1987) Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int. J. Syst. Bacteriol. 37, 463464.
  • [4]
    Welsh, J, McClelland, M (1990) Fingerprinting genomes using PCR with arbitrary primers. Nucleic Acids Res. 18, 72137218.
  • [5]
    Williams, J.G.K, Kubelick, A.R, Livak, K.J, Rafalski, J.A, Tingey, S.V (1990) Polymorphism generated by arbitrary primed PCR in the mouse: application to strain identification and genetic mapping. Nucleic Acids Res. 18, 65316535.
  • [6]
    De Bruijn, F.J (1992) Use of repetitive (repetitive extragenic palindromic and enterobacterial repetitive intergenic consensus) sequences and the polymerase chain reaction to fingerprint the genomes of Rhizobium meliloti isolates and other soil bacteria. Appl. Environ. Microbiol. 58, 21802187.
  • [7]
    Versalovic, J, Koeuth, T, Lupski, J.R (1991) Distribution of repetitive DNA sequences in eubacteria and application to fingerprinting of bacterial genomes. Nucleic Acids Res. 23, 68236831.
  • [8]
    Versalovic, J, Schneider, M, De Bruijn, F.J, Lupski, J.R (1994) Genomic fingerprinting of bacteria using repetitive sequence-based polymerase chain reaction. Methods Mol. Cell. Biol. 5, 2540.
  • [9]
    De Vos, P, Hogers, R, Bleeker, M, Reijans, M, Van De Lee, T, Hornes, M, Frijters, A, Pot, J, Peleman, J, Kuiper, M, Zabeau, M (1995) AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res. 23, 44074414.
  • [10]
    Scortichini, M (1989) Occurrence in soil and primary infections of Pseudomonas corrugata Roberts and Scarlett. J. Phytopathol. 125, 3340.
  • [11]
    Scarlett, C.M, Fletcher, J.T, Roberts, P, Lelliott, R.A (1978) Tomato pith necrosis caused by Pseudomonas corrugata nov. sp. Ann. Appl. Biol. 88, 105114.
  • [12]
    Lukezic, F.L (1979) Pseudomonas corrugata, a pathogen of tomato isolated from symptomless alfalfa roots. Phytopathology 97, 2731.
  • [13]
    Ryder, M.H, Rovira, A.D (1993) Biological control of take-all of glasshouse-grown wheat using strains of Pseudomonas corrugata isolated from wheat field soil. Soil Biol. Biochem. 25, 311320.
  • [14]
    Sutra, L, Siverio, F, Lopez, M.M, Hunault, G, Bollet, C, Gardan, L (1997) Taxonomy of Pseudomonas strains isolated from tomato pith necrosis: emended description of Pseudomonas corrugata and proposal of three unnamed fluorescent Pseudomonas genome species. Int. J. Syst. Bacteriol. 47, 10201033.
  • [15]
    Frey, P, Frey-Klett, P, Garbaye, J, Berge, O, Heulin, T (1997) Metabolic and genotypic fingerprinting of fluorescent pseudomonads associated with the Douglas Fir-Laccaria bicolor mycorrhizosphere. Appl. Environ. Microbiol. 63, 18521860.
  • [16]
    Marilley, L, Vogt, G, Blanc, M, Aragno, M (1998) Bacterial diversity in the bulk soil and rhizosphere fractions of Lolium perenne and Trifolium repens as revealed by PCR restriction analyzis of 16S rDNA. Plant Soil 198, 219224.
  • [17]
    Lemanceau, P, Corberand, T, Gardan, L, Latour, X, Laguerre, G, Boeufgras, J.-M, Alabouvette, C (1995) Effect of two plant species, flax (Linum usitatissinum L.) and tomato (Lycopersicon esculentum Mill.), on the diversity of soilborne populations of fluorescent pseudomonads. Appl. Environ. Microbiol. 61, 10041012.
  • [18]
    Barriuso, E, Houot, S (1996) Rapid mineralization of the S-triazine ring of atrazine in soils in relation to soil management. Soil Biol. Biochem. 28, 13411348.
  • [19]
    Achouak, W., Sutra, L., Heulin, T., L., Meyer, J.-M., Fromin, N., Degraeve, S., Christen, R. and Gardan, L. (2000) Description of Pseudomonas brassicacearum sp. nov. and Pseudomonas thivervalensis sp. nov., two root-associated bacteria isolated from Arabidopsis thaliana and Brassica napus. Int. J. Syst. Evol. Microbiol. 50, (in press).
  • [20]
    Gouzou, L, Burtin, G, Bartoli, F, Heulin, T (1993) Effect of inoculation with Bacillus polymyxa on soil aggregation in the wheat rhizosphere: preliminary examination. Geoderma 56, 479491.
  • [21]
    Mavingui, P, Berge, O, Heulin, T (1990) Immunotrapping of Bacillus polymyxa in soil and in the rhizosphere of wheat. Symbiosis 9, 215221.
  • [22]
    Sambrook, J., Fritsch, E.F. and Maniatis, T. (1989) Molecular cloning: A laboratory manual. Cold Spring Harbor Laboratory Press.
  • [23]
    Gould, W.D, Hagedorn, C, Bardinelli, T.R, Zablotowicz, R.M (1985) New selective media for enumeration and recovery of fluorescent pseudomonads from various habitats. Appl. Environ. Microbiol. 49, 2832.
  • [24]
    Heulin, T, Guckert, A, Balandreau, J (1987) Stimulation of root exudation of rice seedlings by Azospirillum strains: carbon budget under gnotobiotic conditions. Biol. Fertil. Soils 4, 914.
  • [25]
    Hulton, C.S.J, Higgins, C.F, Sharp, P.M (1991) ERIC sequences: a novel family of repetitive elements in the genomes of Escherichia coli, Salmonella typhimurium and other enterobacteria. Mol. Microbiol. 5, 825834.
  • [26]
    Weisburg, W.G.S, Barns, M, Pelletier, D.A, Lane, D.J (1991) 16S ribosomal DNA amplification for phylogenic study. J. Bacteriol. 173, 697703.
  • [27]
    Laguerre, G, Rigottier-Gois, L, Lemanceau, P (1994) Fluorescent Pseudomonas species categorized by using Polymerase Chain Reaction/restriction fragment analyzis of 16S rDNA. Mol. Ecol. 3, 479487.
  • [28]
    Mehta, C. and Patel, N. (1997) StatXact for Windows: statistical software for exact nonparametric inference. Cytel Software Corporation, Cambridge, MA.
  • [29]
    Kosman, E (1996) Difference and diversity of plant pathogen populations: a new approach for measuring. Phytopathology 86, 11521155.
  • [30]
    Magurran, A.E. (1988) Ecological Diversity and its Measurement. Princeton University Press, Princeton, NJ.
  • [31]
    Tipper, J.C (1979) Rarefaction and rarefiction - the use and abuse of a method in paleoecology. Paleobiology 5, 423434.
  • [32]
    Louvrier, P, Laguerre, G, Amarger, N (1995) Semiselective medium for isolation of Rhizobium leguminosarum from soils. Soil Biol. Biochem. 27, 919924.
  • [33]
    Louvrier, P, Laguerre, G, Amarger, N (1996) Distribution of symbiotic genotypes in Rhizobium leguminosarum biovar viciae populations isolated directly from soils. Appl. Environ. Microbiol. 62, 42024205.
  • [34]
    Laguerre, G, Mavingui, P, Allard, M.-R, Charnay, M.-P, Louvrier, P, Mazurier, S.-I, Rigottier-Gois, L, Amarger, N (1996) Typing of rhizobia by PCR DNA fingerprinting and PCR-restriction fragment length polymorphism analysis of chromosomal and symbiotic gene regions: application to Rhizobium leguminosarum and its different biovars. Appl. Environ. Microbiol. 62, 20292036.
  • [35]
    Vaneechoutte, M, Rossau, R, De Vos, P, Gillis, M, Janssens, D, Paepe, N, De Rouck, A, Fiers, T, Claeys, G, Kersters, K (1992) Rapid identification of bacteria of the Comamonadaceae with amplified ribosomal DNA-restriction analysis (ARDRA). FEMS Microbiol. Lett. 93, 227234.
  • [36]
    Giraffa, G, DeVecchi, P, Rossetti, L (1998) Note: identification of Lactobacillus delbrueckii subspecies bulgaricus and subspecies lactis dairy isolates by amplified rDNA restriction analysis. J. Appl. Microbiol. 85, 918924.
  • [37]
    Dijkshoorn, L, Van Harsselaar, B, Tjernberg, I, Bouvet, P.J, Vaneechoutte, M (1998) Evaluation of amplified ribosomal DNA restriction analysis for identification of Acinetobacter genomic species. Syst. Appl. Microbiol. 21, 3339.
  • [38]
    Hassink, J, Lebbink, J, van Veen, J.A (1991) Microbial biomass and activity of a reclaimed polder soil under conventional or reduced-input farming system. Soil Biol. Biochem. 23, 507513.
  • [39]
    Atlas, R.M, Horowitz, A, Krichevsky, M, Bej, A.K (1991) Response of microbial population to environmental disturbance. Microb. Ecol. 22, 249256.