• [1]
    Whitehead, R. (1989) Ulcerative colitis. In: Gastrointestinal and Oesophageal Pathology (Whitehead, R., Ed.), pp. 522–531. Churchill Livingstone, New York.
  • [2]
    Jain, S.K., Peppercorn, M.A. (1997) Inflammatory bowel disease and colon cancer; a review. Dig. Dis. Sci. 15, 243252.
  • [3]
    Targan, S.R., Murphy, L.K. (1995) Clarifying the causes of Crohn's. Nature Med. 1, 12411243.
  • [4]
    Cho, J.H., Nicolae, D.L., Gold, L.H., Fields, C.T., LaBuda, M.C., Rohal, P.M., Pickles, M.R., Oin, L., Fu, Y., Mann, J.S., Kirschner, B.S., Jabs, E.W., Weber, J., Hanauer, S.B., Bayless, T.M., Brant, S.R. (1998) Identification of novel susceptibility loci for inflammatory bowel disease on chromosomes 1p, 3q, and 4q: evidence for epistasis between 1p and IBD1. Proc. Natl. Acad. Sci. USA 95, 75027507.
  • [5]
    Sartor, R.B. (1997) Pathogenesis and immune mechanisms of chronic inflammatory bowel diseases. Am. J. Gastroenterol. 92, 5S11S.
  • [6]
    Matsuda, H., Fuijama, Y., Andoh, A., Ushijama, T., Kajinami, T., Bamba, T. (2000) Characterisation of antibody responses against rectal mucosa-associated bacterial flora in patients with ulceritive colitis. J. Gastroenterol. Hepatol. 15, 6168.
  • [7]
    Postgate, J.R. (1984) The Sulphate-reducing Bacteria, 2nd edn. Cambridge University Press, Cambridge.
  • [8]
    Barton, L.L. (1995) Ecology of sulphate-reducing bacteria. In: Sulphate-reducing Bacteria (Barton, L.L., Ed.), pp. 217–241. Plenum Press, New York.
  • [9]
    Gibson, G.R., Cummings, J.H., Macfarlane, G.T. (1991) Growth and activities of sulphate-reducing bacteria in gut contents of healthy subjects and patients with ulcerative colitis. FEMS Microbiol. Ecol. 86, 103112.
  • [10]
    Pitcher, M.C.L., Beatty, E.R., Cummings, J.H. (2000) The contribution of sulphate-reducing bacteria and 5-aminosalicylic acid to feacal sulphide in patients with ulcerative colitis. Gut 46, 6472.
  • [11]
    Loubinoux, J., Mory, F., Pereira, I.A., Le Faou, A.E. (2000) Bacteremia caused by a strain of Desulfovibrio related to the provisionally named Desulfovibrio fairfieldensis. J. Clin. Microbiol. 38, 931934.
  • [12]
    Shukla, S.K., Reed, K.D. (2000) Desulfovibrio desulfuricans bacteremia in a dog. J. Clin. Microbiol. 38, 17011702.
  • [13]
    Hristova, K.R., Mau, M., Zheng, D., Aminov, R.I., Mackie, R.I., Gaskins, H.R., Raskin, L. (2000) Desulfotomaculum genus and subgenus-specific 16S rRNA hybridization probes for environmental studies. Appl. Environ. Microbiol. 2, 143159.
  • [14]
    Deplancke, B., Hristova, K.R., Oakley, H.A., McCracken, V.J., Aminov, R., Mackie, R.I., Gaskins, H.R. (2000) Molecular ecological analysis of the succession and diversity of sulfate-reducing bacteria in the mouse gastrointestinal tract. Appl. Environ. Microbiol. 66, 21662174.
  • [15]
    Roediger, W.E.W., Moore, J., Babidge, W. (1997) Colonic sulfide in pathogenesis and treatment of ulcerative colitis. Dig. Dis. Sci. 42, 15711579.
  • [16]
    Wyatt, J., Vogelsang, H., Hubl, W., Waldhoer, T., Lochs, H. (1992) Intestinal permeability and the prediction of relapse in Crohn's disease. Lancet 341, 14371439.
  • [17]
    Gibson, G.R., Macfarlane, G.T., Cummings, J.H. (1993) Sulphate reducing bacteria and hydrogen metabolism in the human large intestine. Gut 34, 437439.
  • [18]
    Richardson, C.J., Magee, E.A.M., Cummings, J. (2000) A new method for the determination of sulphide in gastrointestinal contents and whole blood by microdistillation and ion chromatography. Clin. Chim. Acta 293, 115125.
  • [19]
    Zinkevich, V., Kang, H., Bogdarina, I., Hill, M.A., Beech, I.B. (1996) The characterisation of exopolymers produced by different species of marine sulphate-reducing bacteria. Int. Biodeter. Biodegrad. 37, 163172.
  • [20]
    Beech, I.B. and Tapper, R. (1999) Exopolymers of sulphate-reducing bacteria. In: Microbial Extracellular Polymeric Substances: Characterisation, Structure and Function (Wingender, J., Neu, T.R. and Flemming, H.-C., Eds.), pp. 119–126. Springer-Verlag, New York.
  • [21]
    Beech, I.B., Zinkevich, V., Tapper, R., Avci, R. (1999) Study of the interaction of exopolymers produced by sulphate-reducing bacteria with iron using X-ray photoelectron spectroscopy and time-of-flight secondary ionisation mass spectrometry. J. Microbiol. Methods 36, 310.
  • [22]
    Sutherland, I.W. (1985) Biosynthesis and composition of Gram negative bacterial extracellular and wall polysaccharides. Annu. Rev. Microbiol. 39, 243262.
  • [23]
    Sartor, R.B. (1997) Pathogenesis and immune mechanisms of chronic inflammatory bowel diseases. Am. J. Gastroenterol. 92, 5S11S.
  • [24]
    Amman, R.L., Stromley, J., Devereux, R., Key, R., Stahl, D.A. (1992) Molecular and microscopic identification of sulphate-reducing bacteria in multispecies biofilms. Appl. Environ. Microbiol. 58, 614623.
  • [25]
    Muyzer, G., Ramsing, N.B. (1995) Molecular methods to study the organisation of microbial communities. Water Sci. Technol. 32, 19.
  • [26]
    Parham, N.J., Gibson, G.R. (2000) Microbes involved in dissimilatory nitrate reduction in the human large intestine. FEMS Microbiol. Ecol. 31, 2128.
  • [27]
    Muyzer, G., de Waal, E.C., Uitterlinden, A.G. (1993) Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16s rRNA. Appl. Environ. Microbiol. 59, 695700.
  • [28]
    Rolleke, S., Muyzer, G., Wawer, C., Wanner, G., Lubitz, W. (1996) Identification of bacteria in a biodegraded wall painting by denaturing gradient gel electrophoresis of PCR-amplified gene fragments coding for 16S rRNA. Appl. Environ. Microbiol. 62, 20592065.
  • [29]
    Felske, A., Akkermans, A.D.-L., de Vos, W.M. (1998) Quantification of 16S rRNAs in complex bacterial communities by multiple competitive reverse transcription-PCR in temperature gradient gel electrophoresis fingerprints. Appl. Environ. Microbiol. 64, 45814587.
  • [30]
    Sutton, C.L., Kim, J., Yamane, A., Dalwadi, H., Wei, B., Landers, C., Targan, S.R., Braun, J. (2000) Identification of a novel bacterial sequence associated with Crohn's disease. Gastroenterology 119, 2331.
  • [31]
    Odum, J.M., Ebersole, R.C. (1994) Immunoassay of sulphate-reducing bacteria in environmental samples. Methods Enzymol. 243, 607624.
  • [32]
    Tapper, R. (1999) The Effect of Biocides on Biofilms. PhD Thesis, University of Portsmouth.
  • [33]
    Levine, J., Furne, J.K., Levitt, M.D. (1996) Askhenazi Jews, sulfur gases, and ulcerative colitis. J. Clin. Gastroenterol. 22, 228291.
  • [34]
    Roediger, W.E., Moore, J., Babidge, W. (1997) Colonic sulfide in pathogenesis and treatment of ulcerative colitis. Dig. Dis. Sci. 42, 15711579.
  • [35]
    Poxton, I.R., Brown, R., Sawyer, A., Ferguson, A. (1997) Mucosa-associated bacterial flora of the human colon. J. Med. Microbiol. 46, 8591.
  • [36]
    Knoblauch, C., Sahm, K., Jorgensen, B.B. (1999) Psychrophilic sulfate-reducing bacteria isolated from permanently cold Antarctic marine sediments: description of Desulfofrigus oceanense gen. nov., sp. nov., Desulfofrigus fragile sp. nov., Desulfotalea psychrophila gen. nov., sp. nov. and Desulfottalea arctica sp. nov. Int. J. Syst. Bacteriol. 49, 16311643.
  • [37]
    Widdel, F. and Bak, F. (1992) Gram-negative mesophilic sulfate-reducing bacteria. In: The Prokaryotes (Balows, A., Truper, H.G., Dworkin, M., Harder, W. and Schleifer, K.-H., Eds.), pp. 3352–3378. Springer, New York.
  • [38]
    Feio, M.J., Beech, I.B., Carepo, M., Lopes, J., Cheung, S., Franco, R., Guezennec, J., Smith, J., Mitchell, J., Moura, J.J.G., Lino, A.R. (1998) Isolation and characterisation of a novel sulphate-reducing bacterium of the Desulfovibrio genus. Anaerobe 4, 117130.
  • [39]
    Kang, H. (1998) Characterisation of Bacterial Exopolymers using Analytical Techniques. PhD Thesis, University of Portsmouth.
  • [40]
    Pereira, A., Franco, R., Feio, M.J., Pinto, C., Lampreia, J., Reis, M.A., Calvete, J., Moura, I., Beech, I.B., Lino, A.R., Moura, J.G. (1996) Characterisation of enzymes from a sulphate-reducing bacterium implicated in the corrosion of steel. Biochem. Biophys. Res. Commun. 221, 414421.
  • [41]
    Zinkevich, V., Beech, I.B. (2000) Isolation of intact high molecular weight chromosomal DNA from Desulfovibrio spp. Mol. Biol. Today 1, 2933.
  • [42]
    Speich, N., Dahl, C., Heising, P., Klein, A., Lottspeich, F., Stetter, K.O., Truper, H.G. (1994) Adenylylsulphate reductase from the sulphate-reducing archeon Archaeoglobus fulgidus: cloning and characterization of the genes and comparison of the enzyme with other iron-sulphur flavoproteins. Microbiology 140, 12731284.
  • [43]
    Hipp, W.M., Pott, A.S., Thum-Schmitz, N., Faath, I., Dahl, C., Truper, H.G. (1997) Towards the phylogeny of APS reductases and sirohaem sulfite reductases in sulfate-reducing and sulfur-oxidizing prokaryotes. Microbiology 143, 28912902.
  • [44]
    Sambrook, J., Fritsch, E.F. and Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual (Ford, N., Nolan, C. and Ferguson, M., Eds.), p. 608. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
  • [45]
    Messing, J., Crea, R., Seeburg, P.H. (1981) A system for shotgun DNA sequencing. Nucleic Acids Res. 9, 309314.
  • [46]
    S.M. Florin G.R. Gibson G. Neale J.H. Cummings (1990) A role of sulphate-reducing bacteria in ulcerative colitis Gastroenterology 98 A170.
  • [47]
    Gibson, G.R., Cummings, J.H., Macfarlane, G.T., Allison, C., Segal, I., Vorster, H.H., Walker, A.R.-P. (1990) Alternative pathways for hydrogen disposal during fermentation in the human colon. Gut 31, 679683.
  • [48]
    Devereux, R., Delaney, M., Widdel, F., Stahl, D.A. (1992) Genus and group-specific hybridization probes for determinative and environmental studies of sulphate-reducing bacteria. Syst. Appl. Microbiol. 15, 601609.
  • [49]
    Voordouw, G. (1990) Hydrogenase genes in Desulfovibrio. In: Microbiology and Biochemistry of Strict Anaerobes involved in Interspecies Hydrogen Transfer (Belaich, J.P., Bruschi, M. and Garcia, J.L., Eds), pp. 37–51. Plenum, New York.
  • [50]
    Schramm, A., Santegoeds, C.M., Nielsen, H.K., Ploug, H., Wagner, M., Pribyl, M., Wanner, J., Amann, R., De Beer, D. (1999) On the occurrence of anoxic microniches, denitrification, and sulfate reduction in aerated activated sludge. Appl. Environ. Microbiol. 65, 41894196.
  • [51]
    Moore, J.W., Millard, S., Babidge, W., Rowland, R., Roediger, W.E. (1997) Hydrogen sulphide produces diminished fatty acid oxidation in the rat colon in vivo: implications for ulcerative colitis. Aust. N.Z. J. Surg. 67, 245249.