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References

  • [1]
    W.D ThomasR.W Graham Bacteria in apparently healthy pinto beans, Phytopathology, 42 1952 214.
  • [2]
    Chen, C, Bauske, E.M, Musson, E.M, Rodrı́guez-Kábana, R, Kloepper, J.W (1995) Biological control of Fusarium wilt on cotton by use of endophytic bacteria. Biol. Control 5, 8391.
  • [3]
    Sturz, A.V, Matheson, B.G (1996) Populations of endophytic bacteria which influence host-resistance to Erwinia-induced bacterial soft rot in potato tubers. Plant Soil 184, 265271.
  • [4]
    Sturz, A.V, Nowak, J (2000) Endophytic communities of rhizobacteria and the strategies to create yield enhancing associations with crops. Appl. Soil Ecol. 15, 183190.
  • [5]
    Benhamou, N, Gagné, S, Le Quéré, D, Dehbi, L (2000) Bacterial-mediated induced resistance in cucumber: beneficial effect of the endophytic bacterium Serratia plymuthica on the protection against infection by Pythium ultimum. Phytopathology 90, 4556.
  • [6]
    Chaintreuil, C, Giraud, E, Prin, Y, Lorquin, J, Bâ, A, Gillis, M, de Lajudie, P, Dreyfus, B (2000) Photosynthetic bradyrhizobia are natural endophytes of the African wild rice Oryza breviligulata. Appl. Environ. Microbiol. 66, 54375447.
  • [7]
    Hallmann, J, Quadt-Hallmann, A, Mahaffee, W.F, Kloepper, J.W (1997) Bacterial endophytes in agricultural crops. Can. J. Microbiol. 43, 895914.
  • [8]
    Döbereiner, J (1993) Recent changes in concepts of plant bacteria interactions: endophytic N2 fixing bacteria. Cienc. Cult. 44, 310313.
  • [9]
    McInroy, J.A, Kloepper, J.W (1995) Survey of indigenous bacterial endophytes from cotton and sweet corn. Plant Soil 173, 337342.
  • [10]
    Quadt-Hallmann, A, Hallmann, J, Kloepper, J.W (1997) Bacterial endophytes in cotton: location and interaction with other plant-associated bacteria. Can. J. Microbiol. 42, 11441154.
  • [11]
    Gough, C, Galera, C, Vasse, J, Webster, G, Cocking, E.C, Dénarié, J (1997) Specific flavonoids promote intercellular root colonization of Arabidopsis thaliana by Azorhizobium caulinodans. Mol. Plant–Microbe Interact. 10, 560570.
  • [12]
    Bell, C.R, Dickie, G.A, Harvey, W.L.G, Chan, J.W.Y.F (1995) Endophytic bacteria in grapevine. Can. J. Microbiol. 41, 4653.
  • [13]
    Stoltzfus, J.R, So, R, Malarvithi, P.P, Ladha, J.K, de Bruijn, F.J (1998) Isolation of endophytic bacteria from rice and assessment of their potential for supplying rice with biologically fixed nitrogen. Plant Soil 194, 2536.
  • [14]
    Sturz, A.V, Christie, B.R, Matheson, B.G (1998) Associations of bacterial endophyte populations from red clover and potato crops with potential for beneficial allelopathy. Can. J. Microbiol. 44, 162167.
  • [15]
    Sturz, A.V (1995) The role of endophytic bacteria during seed piece decay and potato tuberization. Plant Soil 175, 257263.
  • [16]
    Garbeva, P, van Overbeek, L.S, van Vuurde, J.W.L, van Elsas, J.D (2001) Analysis of endophytic bacterial communities of potato by plating and denaturating gradient gel electrophoresis (DGGE) of 16S rDNA based PCR fragments. Microb. Ecol. 41, 369383.
  • [17]
    Amann, R.I, Ludwig, W, Schleifer, K.H (1995) Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Appl. Environ. Microbiol. 59, 143169.
  • [18]
    Tholozan, J.L, Cappelier, J.M, Tissier, J.P, Delattre, G, Federighi, M (1999) Physiological characterization of viable-but-nonculturable Campylobacter jejeuni cells. Appl. Environ. Microbiol. 65, 11101116.
  • [19]
    Felske, A, Wolterink, A, van Lis, R, Akkermans, A.D.L (1998) Phylogeny of the main bacterial 16S rRNA sequences in Drentse A grassland soils (The Netherlands). Appl. Environ. Microbiol. 64, 871879.
  • [20]
    Dunbar, J, Takala, S, Barns, S.M, Davis, J.A, Kuske, C.R (1999) Levels of bacterial community diversity in four arid soils compared by cultivation and 16S rRNA gene cloning. Appl. Environ. Microbiol. 65, 16621669.
  • [21]
    Muyzer, G, de Waal, E.C, Uitterlinden, A.G (1993) Profiling of complex microbial populations by denaturating gradient gel electrophoresis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl. Environ. Microbiol. 59, 695700.
  • [22]
    Heuer, H, Krsek, M, Baker, P, Smalla, K, Wellington, E.M.H (1997) Analysis of actinomycete communities by specific amplification of genes encoding 16S rRNA and gel-electrophoretic separation in denaturating gradients. Appl. Environ. Microbiol. 63, 32333241.
  • [23]
    Felske, A, Wolterink, A, van Lis, R, de Vos, W.M, Akkermans, A.D.L (1999) Searching for predominant soil bacteria: 16S rDNA cloning versus strain cultivation. FEMS Microbiol. Ecol. 30, 137145.
  • [24]
    Liu, W, Marsh, T.L, Cheng, H, Forney, L.J (1997) Characterization of microbial diversity by determining terminal restriction length polymorphisms of genes encoding 16S rDNA. Appl. Environ. Microbiol. 63, 45164522.
  • [25]
    Dunbar, J, Ticknor, L.O, Kuske, C.R (2000) Assessment of microbial diversity in four Southwestern United States soils by 16S rRNA gene terminal restriction fragment analysis. Appl. Environ. Microbiol. 66, 29432950.
  • [26]
    Osborn, A.M, Moore, E.R.B, Timmis, K.N (2000) An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics. Environ. Microbiol. 2, 3950.
  • [27]
    Schwieger, F, Tebbe, C (1998) A new approach to utilize PCR-single-strand-conformation-polymorphism for 16S rRNA gene-based microbial community analysis. Appl. Environ. Microbiol. 64, 48704876.
  • [28]
    Schauer, C. (2000) On-farm Evaluierung von sekundären Kartoffelsorten in biologischen Produktionssystemen, on-line: http://www.arche-noah.at/artikel/kartoffelversuch.html.
  • [29]
    Murashige, T, Skoog, F (1962) A revised medium for rapid growth and bioassays with tobacco tissue cultures. Physiol. Plant. 15, 473497.
  • [30]
    van Elsas, J.D., and Smalla, K. (1995) Extraction of microbial community DNA from soils, in: Molecular Microbial Ecology Manual (de Bruijn, F.J., Akkermans, A.D.L. and van Elsas, J.D. Ed.), Ch. 1.3.3, pp. 1–11, Kluwer Academic Publishers, Dordrecht.
  • [31]
    Edwards, U, Rogall, T, Blöcker, H, Emde, M, Böttger, E.C (1989) Isolation and direct complete nucleotide determination of entire genes: characterization of a gene coding for 16S ribosomal RNA. Nucleic Acids Res. 17, 78437853.
  • [32]
    Altschul, S.F, Gish, W, Miller, W, Myers, E.W, Lipman, D.J (1990) Basic local alignment tool. J. Mol. Biol. 215, 403410.
  • [33]
    Maidak, B.L, Olsen, G.J, Larsen, N, Overbeek, R, McCaughy, M.J, Woese, C.R (1997) The RDP (Ribosomal Database Project). Nucleic Acids Res. 25, 109111.
  • [34]
    F Corpet Multiple sequence alignment with hierarchical clustering, Nucleic Acids Res., 16 1988 10881.
  • [35]
    van de Peer, Y, de Wachter, R (1994) TREECON for Windows: a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment. Comput. Appl. Biosci. 10, 569570.
  • [36]
    Jukes, T.H. and Cantor, C.R. (1969) Evolution of protein molecules, in: Mammalian Protein Metabolism (Munro, Ed.), pp. 21–132, Academic Press, New York.
  • [37]
    Suzuki, M.T, Giovannoni, S.J (1996) Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR. Appl. Environ. Microbiol. 62, 625630.
  • [38]
    Lichtenthaler, H.K (1998) The stress concept in plants: an introduction. Ann. N. Y. Acad. Sci. 851, 187198.
  • [39]
    Leifert, C, Waites, W.M, Nicholas, J.R (1989) Bacterial contaminants of micropropagated plant cultures. J. Appl. Bacteriol. 67, 353361.
  • [40]
    Leifert, C, Morris, C.E, Waites, W.M (1994) Ecology of microbial saprophytes and pathogens in tissue culture and field-grown plants: reasons for contamination problems in vitro. Crit. Rev. Plant Sci. 13, 139183.
  • [41]
    Sardi, P, Saracchi, M, Quaroni, S, Petrolini, B, Borgonovi, G.E, Merli, S (1992) Isolation of endophytic Streptomyces strains from surface-sterilized roots. Appl. Environ. Microbiol. 58, 26912693.
  • [42]
    Sturz, A.V, Christie, B.R, Matheson, B.G, Nowak, J (1997) Biodiversity of endophytic bacteria which colonize red clover nodules, roots, stems and foliage and their influence on host growth. Biol. Fertil. Soils 25, 1319.
  • [43]
    Sturz, A.V, Christie, B.R, Matheson, B.G, Arsenault, W.J, Buchanan, N.A (1999) Endophytic bacterial communities in the periderm of potato tubers and their potential to improve resistance to soil-borne plant pathogens. Plant Pathol. 48, 360369.
  • [44]
    Elvira-Recuenco, M, van Vuurde, J.W.L (2000) Natural incidence of endophytic bacteria in pea cultivars under field conditions. Can. J. Microbiol. 46, 10361041.
  • [45]
    Lilley, A.K, Fry, J.C, Bailey, M.J, Day, M.J (1996) Comparison of aerobic heterotrophic taxa isolated from four root domains of mature sugar beet (Beta vulgaris). FEMS Microbiol. Ecol. 21, 231242.
  • [46]
    Germida, J.J, Siciliano, S.D, de Freitas, J.R, Seib, A.M (1998) Diversity of root-associated bacteria associated with field-grown canola (Brassica napus L.) and wheat (Triticum aestivum L.). FEMS Microbiol. Ecol. 26, 4350.
  • [47]
    Herman, E.B (1990) Non-axenic plant tissue culture: possibilities and opportunities. Acta Hort. 280, 112117.
  • [48]
    Chelius, M.K, Triplett, E.W (2000) Dyadobacter fermetans gen. nov., sp. nov., a novel Gram-negative bacterium isolated from surface-sterilized Zea mays stems. Int. J. Syst. Evol. Microbiol. 50, 751758.
  • [49]
    Schlesner, H (1994) The development of media suitable for the microoganisms morphologically resembling Planctomycetes spp., Pirellula spp., and other Planctomycetales from various aquatic habitats using dilute media. Syst. Appl. Microbiol. 17, 135145.
  • [50]
    Derakshani, M, Lukow, T, Liesack, W (2001) Novel bacterial lineages at the (sub)division level as detected by signature nucleotide recovery of 16S rRNA genes from bulk soil and rice roots of flooded soil microcosms. Appl. Environ. Microbiol. 67, 623631.
  • [51]
    Doumbou, C.L, Akimov, V, Beaulieu, C (1998) Selection and characterization of microorganisms utilizing thaxtomin A, a phytotoxin produced by Streptomyces scabies. Appl. Environ. Microbiol. 64, 43134316.