SEARCH

SEARCH BY CITATION

References

  • [1]
    Butterfield, D.A., Jonasson, I.R., Massoth, G.J., Feely, R.A., Roe, K.K., Embley, R.W., Holden, J.F., McDuff, R.E., Lilley, M.D., Delaney, J.R. (1997) Seafloor eruptions and evolution of hydrothermal fluid chemistry. Phil. Trans. R. Soc. Lond. A 355, 369386.
  • [2]
    Delaney, J.R., Kelley, D.S., Lilley, M.D., Butterfield, D.A., Baross, J.A., Wilcock, W.S.D., Embley, R.W., Summit, M. (1998) The quantum event of oceanic crustal accretion: Impacts of diking at mid-ocean ridges. Science 281, 222230.
  • [3]
    Huber, R., Stoffers, P., Cheminee, J.L., Richnow, H.H., Stetter, K.O. (1990) Hyperthermophilic archaebacteria within the crater and open-sea plume of erupting Macdonald Seamount. Nature 345, 179181.
  • [4]
    Summit, M., Baross, J.A. (1998) Thermophilic subseafloor microorganisms from the 1996 North Gorda Eruption. Deep-Sea Res. II 45, 27512766.
  • [5]
    Summit, M., Baross, J.A. (2001) A novel microbial habitat in the mid-ocean ridge subseafloor. Proc. Natl. Acad. Sci. USA 98, 21582163.
  • [6]
    Taylor, C.D., Wirsen, C.O. (1997) Microbiology and ecology of filamentous sulfur formation. Science 277, 14831485.
  • [7]
    Taylor, C.D., Wirsen, C.O., Gaill, F. (1999) Rapid microbial production of filamentous sulfur mats at hydrothermal vents. Appl. Environ. Microbiol. 65, 22532255.
  • [8]
    Haymon, R.M., Fornari, D.J., von Damm, K.L., Lilley, M.D., Perfit, M.R., Edmond, J.M., W.C. Shanks, IIILutz, R.A., Grebmeier, J.M., Carbotte, S., Wright, C.D., Mclaughlin, E., Smith, M., Beedle, N., Olson, E. (1993) Volcanic eruption of the mid-ocean ridge along the East Pacific Rise crest at 9 degree 45–52′N: Direct submersible observations of seafloor phenomena associated with an eruption event in April, 1991. Earth Planet. Sci. Lett. 119, 85101.
  • [9]
    Juniper, S.K., Martineu, P., Sarrazin, J., Gelanis, Y. (1995) Microbial-mineral floc associated with nascent hydrothermal activity on CoAxial Segment, Juan de Fuca Ridge. Geophys. Res. Lett. 22, 179182.
  • [10]
    Cragg, B.A. and Parkes, R.J. (1994) Bacterial profiles in hydrothermally active deep sediment layers from Middle Valley (NE Pacific), Sites 857 and 858. In: Proceedings of the Ocean Drilling Program Scientific Results (Mottl, M.J., Davis, E.E., Fisher, A.T. and Slack, J.F., Eds.), 139, pp. 509–516. Texas A&M University, Ocean Drilling Program, College Station, TX.
  • [11]
    Parkes, R.J., Cragg, B.A., Bale, S.J., Getliff, J.M., Goodman, K., Rochelle, P.A., Fry, J.C., Weightman, A.J., Harvey, S.M. (1994) Deep bacterial biosphere in Pacific Ocean sediments. Nature 371, 410413.
  • [12]
    Summit, M., Peacock, A., Ringleberg, D., White, D.C. and Baross, J.A. (2000) Phospholipid fatty acid-derived microbial biomass and community dynamics in hot, hydrothermally influenced sediments from Middle Valley, Juan de Fuca Ridge. In: Proceedings of the Ocean Drilling Program Scientific Results (Zierenberg, R.A., Fouquet, Y., Miller, D.J. and Normark, W.R., Eds.), 169, pp. 1–19. Texas A&M University, Ocean Drilling Program, College Station, TX.
  • [13]
    Teske, A., Hinrichs, K.-U., Edgcomb, V., de Vera Gomiz, A., Kysela, D., Sylva, S.P., Sogin, M.L., Jannasch, H.W. (2002) Microbial diversity of hydrothermal sediments in the Guaymas Basin: Evidence for anaerobic methanotrophic communities. Appl. Environ. Microbiol. 68, 19942007.
  • [14]
    Hinrichs, K.-U., Hayes, J.M., Sylva, S.P., Brewer, P.G., DeLong, E.F. (1999) Methane-consuming archaebacteria in marine sediments. Nature 398, 802805.
  • [15]
    Harmsen, H.J.M., Prieur, D., Jeanthon, C. (1997) Distribution of microorganisms in deep-sea hydrothermal vent chimneys investigated by whole-cell hybridization and enrichment culture of thermophilic subpopulations. Appl. Environ. Microbiol. 63, 28762883.
  • [16]
    Holden, J.F., Summit, M., Baross, J.A. (1998) Thermophilic and hyperthermophilic microorganisms in 3–30 degree C hydrothermal fluids following a deep-sea volcanic eruption. FEMS Microbiol. Ecol. 25, 3341.
  • [17]
    Huber, J.A., Butterfield, D.A., Baross, J.A. (2002) Temporal changes in archaeal diversity and chemistry in a mid-ocean ridge subseafloor habitat. Appl. Environ. Microbiol. 68, 15851594.
  • [18]
    Reysenbach, A.-L., Longnecker, K., Kirshtein, J. (2000) Novel bacterial and archaeal lineages from an in-situ growth chamber deployed at a Mid-Atlantic Ridge hydrothermal vent. Appl. Environ. Microbiol. 66, 37983806.
  • [19]
    Fisk, M.R., Giovannoni, S.J., Thorseth, I.H. (1998) Alteration of oceanic volcanic glass: Textural evidence of microbial activity. Science 281, 978980.
  • [20]
    Summit, M. (2000) Ecology, physiology, and phylogeny of subseafloor thermophiles from mid-ocean ridge environments. Ph.D. Thesis, University of Washington, Seattle, WA.
  • [21]
    Butterfield, D.A., Massoth, G.J. (1994) Geochemistry of north Cleft segment vent fluids: Temporal changes in chlorinity and their possible relation to recent volcanism. J. Geophys. Res. 99, 49514968.
  • [22]
    von Damm, K.L., Oosting, S.E., Kozlowski, R., Buttermore, L.G., Colodner, D.C., Edmonds, H.N., Edmond, J.M., Grebmeier, J.M. (1995) Evolution of East Pacific Rise hydrothermal vent fluids following a volcanic eruption. Nature 375, 4750.
  • [23]
    Johnson, H.P., Embley, R.W. (1990) Axial Seamount: An active ridge axis volcano on the central Juan de Fuca Ridge. J. Geophys. Res. 95, 1268912696.
  • [24]
    Baker, E.T., Fox, C.G., Cowen, J.P. (1999) In situ observations of the onset of hydrothermal discharge during the 1998 submarine eruption of Axial Volcano, Juan de Fuca Ridge. Geophys. Res. Lett. 26, 34453448.
  • [25]
    Dziak, R.P., Fox, C.G. (1999) The January 1998 earthquake swarm at Axial Volcano, Juan de Fuca Ridge: Hydroacoustic evidence of seafloor volcanic activity. Geophys. Res. Lett. 26, 34293432.
  • [26]
    Embley, R.W., Chadwick, W.W.J., Clague, D., Stakes, D. (1999) 1998 eruption of Axial Volcano: Multibeam anomalies and sea-floor observations. Geophys. Res. Lett. 26, 34253428.
  • [27]
    Porter, K.G., Feig, Y.S. (1980) The use of DAPI for identifying and counting aquatic microflora. Limnol. Oceanogr. 25, 943948.
  • [28]
    Polz, M.F., Cavanaugh, C.M. (1998) Bias in template-to-product ratios in multitemplate PCR. Appl. Environ. Microbiol. 64, 37243730.
  • [29]
    Maidak, B.L., Cole, J.R., Parker, C.T.J., Garrity, G.M., Larsen, N., Li, B., Lilburn, T.G., McCaughey, M.J., Olsen, G.J., Overbeek, R., Pramanik, S., Schmidt, T.M., Tiedje, J.M., Woese, C.R. (1999) A new version of the RDP (Ribosomal Database Project). Nucleic Acids Res. 27, 171173.
  • [30]
    Hall, T.A. (1999) BioEdit: A user-friendly biological sequence alignment editor and analysis program for windows 95/98/NT. In: Nucleic Acids Symp. Ser.
  • [31]
    Hughes, J.B., Hellmann, J.J., Ricketts, T.H., Bohannan, B.J.M. (2001) Counting the uncountable: Statistical approaches to estimating microbial diversity. Appl. Environ. Microbiol. 67, 43994406.
  • [32]
    Good, I.J. (1953) The population frequencies of species and the estimation of population parameters. Biometrika 40, 237262.
  • [33]
    von Damm, K.L., Buttermore, L.G., Oosting, S.E., Bray, A.M., Fornari, D.J., Lilley, M.D., W.C. Shanks, I (1997) Direct observation of the evolution of a seafloor ‘black smoker’ from vapor to brine. Earth Planet. Sci. Lett. 149, 101111.
  • [34]
    Fujiwara, Y., Kato, C., Masui, N., Fujikura, K., Kojima, S. (2001) Dual symbiosis in the cold-seep thyasirid clam Maorithyas hadalis from the hadal zone in the Japan Trench, Western Pacific. Mar. Ecol. Prog. Ser. 214, 151159.
  • [35]
    Fujiwara, Y., Takai, K., Uematsu, K., Tsuchida, S., Hunt, J.C., Hashimoto, J. (2000) Phylogenetic characterization of endosymbionts in three hydrothermal vent mussels: influence on host distributions. Mar. Ecol. Prog. Ser. 208, 147155.
  • [36]
    Peek, A.S., Feldman, R.A., Lutz, R.A., Vrijenhoek, R.C. (1998) Cospeciation of chemoautotrophic bacteria and deep sea clams. Proc. Natl. Acad. Sci. USA 95, 99629966.
  • [37]
    Durand, P., Gros, O., Frenkiel, L., Prieur, D. (1996) Phylogenetic characterization of sulfur-oxidizing bacterial endosymbionts in three tropical Lucinidae by 16S sequence analysis. Mol. Mar. Biol. Biotechnol. 5, 3742.
  • [38]
    Solano, F., Sanchez-Amat, A. (1999) Studies on the phylogenetic relationships of melanogenic marine bacteria: Proposal of Marinomonas mediterranea sp. nov.. Int. J. Syst. Bacteriol. 49, 12411246.
  • [39]
    Eilers, H., Pernthaler, J., Glockner, F.O., Amann, R. (2000) Culturability and in situ abundance of pelagic bacteria from the North Sea. Appl. Environ. Microbiol. 66, 30443051.
  • [40]
    Li, L., Kato, C., Horikoshi, K. (1999) Microbial diversity in sediments collected from the deepest cold-seep area, the Japan Trench. Mar. Biotechnol. 1, 391400.
  • [41]
    Rappe, M.S., Kemp, P.F., Giovannoni, S.J. (1997) Phylogenetic diversity of marine coastal picoplankton 16S rRNA genes cloned from the continental shelf off Cape Hatteras, North Carolina. Limnol. Oceanogr. 42, 811826.
  • [42]
    Lopez-Garcia, P., Lopez-Lopez, A., Moreira, D., Rodriguez-Valera, F. (2001) Diversity of free-living prokaryotes from a deep-sea site at the Antarctic Polar Front. FEMS Microbiol. Ecol. 36, 193202.
  • [43]
    Longnecker, K., Reysenbach, A.-L. (2001) Expansion of the geographic distribution of a novel lineage of ε-proteobacteria to a hydrothermal vent site on the Southern East Pacific Rise. FEMS Microbiol. Ecol. 35, 287293.
  • [44]
    Moyer, C.L., Dobbs, F.C., Karl, D.M. (1995) Phylogenetic diversity of the bacterial community from a microbial mat at an active, hydrothermal vent system, Loihi Seamount, Hawaii. Appl. Environ. Microbiol. 61, 15551562.
  • [45]
    Li, L., Kato, C., Horikoshi, K. (1999) Bacterial diversity in deep-sea sediments from different depths. Biodiv. Conserv. 8, 659677.
  • [46]
    Li, L., Guezennec, J., Nichols, P., Henry, P., Yanagibayashi, M., Kato, C. (1999) Microbial diversity in Nankai trough sediments at a depth of 3,843 m. J. Oceanol. 55, 635642.
  • [47]
    Corre, E., Reysenbach, A.-L., Prieur, D. (2001) ε-proteobacterial diversity from a deep-sea hydrothermal vent on the Mid-Atlantic Ridge. FEMS Microbiol. Lett. 205, 329335.
  • [48]
    Polz, M.F., Cavanaugh, C.M. (1995) Dominance of one bacterial phylotype at a Mid-Atlantic Ridge hydrothermal vent site. Proc. Natl. Acad. Sci. USA 92, 72327236.
  • [49]
    Naganuma, T., Kato, C., Hirayama, H., Moriyama, N., Hashimoto, J., Horikoshi, K. (1997) Intracellular occurrence of ε-proteobacterial 16S rDNA sequences in the vestimentiferan trophosome. J. Oceanol. 53, 193197.
  • [50]
    Muyzer, G., Teske, A., Wirsen, C.O., Jannasch, H.W. (1995) Phylogenetic relationships of Thiomicrospira species and their identification in deep-sea hydrothermal vents samples by denaturing gradient gel electrophoresis of 16S rDNA fragments. Arch. Microbiol. 164, 165172.
  • [51]
    Thamdrup, B., Rossello-Mora, R., Amann, R. (2000) Microbial manganese and sulfate reduction in Black Sea shelf sediments. Appl. Environ. Microbiol. 66, 28882897.
  • [52]
    Linton, D., Hurtado, A., Lawson, A.J., Clewley, J.P., Chart, H., Stanley, J. (1999) Campylobacter coli strains with enlarged flagellin genes isolated from river water. Res. Microbiol. 150, 247255.
  • [53]
    Suzuki, M.T., Beja, O., Taylor, L.T., DeLong, E.F. (2001) Phylogenetic analysis of ribosomal RNA operons from uncultivated coastal marine bacterioplankton. Environ. Microbiol. 3, 323331.
  • [54]
    Field, K.G., Gordon, D., Wright, T., Rappe, M., Urbach, E., Vergin, K.L., Giovannoni, S.J. (1997) Diversity and depth-specific distribution of SAR11 cluster rRNA genes from marine planktonic bacteria. Appl. Environ. Microbiol. 63, 6370.
  • [55]
    Sakano, Y., Kerkhof, L.J. (1998) Assessment of changes in microbial community structure during operation of an ammonia biofilter with molecular tools. Appl. Environ. Microbiol. 64, 48774882.
  • [56]
    Kampfer, P., Denner, E.B.M., Meyer, S., Moore, E.R.B., Busse, H.-J. (1997) Classification of ‘Pseudomonas azotocolligans’ Anderson 1955, 132, in the Genus Sphingomonas as Sphingomonas trueperi sp. nov.. Int. J. Syst. Bacteriol. 47, 577583.
  • [57]
    Takeuchi, M., Hamana, K., Hiraishi, A. (2001) Proposal of the genus Sphingomonas sensu stricto and three new genera, Sphingobium, Novosphingobium and Sphingopyxis, on the basis of phylogenetic and chemotaxonomic analyses. Int. J. Syst. Bacteriol. 51, 14051417.
  • [58]
    Hagstrom, A., Pinhassi, J., Zweifel, U.L. (2000) Biogeographical diversity among marine bacterioplankton. Aquat. Microb. Ecol. 21, 231244.
  • [59]
    Simek, K., Pernthaler, J., Weinbauer, M.G., Hornak, K., Dolan, J.R., Nedoma, J., Masin, M., Amann, R. (2001) Changes in bacterial community composition and dynamics and viral mortality rates associated with enhanced flagellate grazing in a mesoeutrophic reservoir. Appl. Environ. Microbiol. 67, 27232733.
  • [60]
    Utaker, J.B., Bakken, L., Jiang, Q.Q., Nes, I.F. (1995) Phylogenetic analysis of seven new isolates of ammonia-oxidizing bacteria based on 16S rRNA gene sequences. Syst. Appl. Microbiol. 18, 549559.
  • [61]
    Gonzalez, J.M., Simo, R., Massana, R., Covert, J.S., Casamayor, E.O., Pedros-Alio, C., Moran, M.A. (2000) Bacterial community structure associated with a dimethylsulfoniopropionate-producing North Atlantic algal bloom. Appl. Environ. Microbiol. 66, 42374246.
  • [62]
    Kerkhof, L.J., Voytek, M.A., Sherrell, R.M., Millie, D., Schofield, O. (1999) Variability in bacterial community structure during upwelling in the coastal ocean. Hydrobiologia 401, 139148.
  • [63]
    Soddell, J.A., Seviour, R.J., Blackall, L.L., Hugenholtz, P. (1998) New foam-forming nocardioforms found in activated sludge. Wat. Sci. Tech. 37, 495502.
  • [64]
    Zaitsev, G.M., Tsitko, I.V., Rainey, F.A., Trotsenko, Y.A., Uotila, J.S., Stackebrandt, E., Salkinoja-Salonen, M.S. (1998) New aerobic ammonium-dependent obligately oxalotrophic bacteria: Description of Ammoniphilus oxalaticus gen. nov., sp. nov. and Ammoniphilus oxalivorans gen. nov., sp. nov.. Int. J. Syst. Bacteriol. 48, 151163.
  • [65]
    Urbach, E., Vergin, K.L., Young, L., Morse, A., Larson, G.L., Giovannoni, S.J. (2001) Unusual bacterioplankton community structure in ultra-oligotrophic Crater Lake. Limnol. Oceanogr. 46, 557572.
  • [66]
    Dojka, M.A., Harris, J.K., Pace, N.R. (2000) Expanding the known diversity and environmental distribution of an uncultured phylogenetic division of bacteria. Appl. Environ. Microbiol. 66, 16171621.
  • [67]
    Skirnisdottir, S., Hreggvidsson, G.O., Hjorleifsdottir, S., Marteinsson, V.T., Petursdottir, S.K., Holst, O., Kristjannson, J.K. (2000) Influence of sulfide and temperature on species composition and community structure of hot spring microbial mats. Appl. Environ. Microbiol. 66, 28352841.
  • [68]
    Juniper, S.K., Tunnicliffe, V. (1997) Crustal accretion and the hot vent ecosystem. Phil. Trans. R. Soc. Lond. A 355, 459474.
  • [69]
    Lynch, K.S. (2000) Bacterial community structure and phylogenetic diversity of hydrothermal vents at Axial Volcano, Juan de Fuca Ridge. M.S. Thesis, Western Washington University, Bellingham, WA.
  • [70]
    Haddad, A., Camacho, F., Durand, P., Cary, C.S. (1995) Phylogenetic characterization of the epibiotic bacteria associated with the hydrothermal vent polychaete Alvinella pompejana. Appl. Environ. Microbiol. 61, 16791687.
  • [71]
    Cary, S.C., Cottrell, M.T., Stein, J.L., Camacho, F., Desbruyeres, D. (1997) Molecular identification and localization of a filamentous symbiotic bacteria associated with the hydrothermal vent annelid Alvinella pompejana. Appl. Environ. Microbiol. 63, 11241130.
  • [72]
    Lopez-Garcia, P., Gaill, F., Moreira, D. (2002) Wide bacterial diversity associated with tubes of the vent worm Riftia pachyptila. Environ. Microbiol. 4, 204215.
  • [73]
    Reysenbach, A.-L., Shock, E.L. (2002) Merging genomes with geochemistry in hydrothermal ecosystems. Science 296, 10771082.
  • [74]
    Campbell, B., Jeanthon, C., Kostka, J.E., Luther, G.W.I., Cary, C.S. (2001) Growth and phylogenetic properties of novel bacteria belonging to the epsilon subdivision of the Proteobacteria enriched from Alvinella pompejana and deep-sea hydrothermal vents. Appl. Environ. Microbiol. 67, 45664572.
  • [75]
    Miroshnickenko, M.L., Kostrikina, N.A., L’Haridon, S., Jeanthon, C., Hippe, H., Stackebrandt, E., Bonch-Osmolovskaya, E. (2002) Nautila lithotrophica gen nov., sp. nov., a thermophilic sulfur-reducing ε-proteobacterium isolated from a deep-sea hydrothermal vent. Int. J. Syst. Evol. Microbiol. 52, 12991304.
  • [76]
    Glockner, F.O., Amann, R., Alfreider, A., Pernthaler, J., Psenner, R., Trebesius, K., Schleifer, K.-H. (1996) An in situ hybridization protocol for detection and identification of planktonic bacteria. Syst. Appl. Microbiol. 19, 403406.
  • [77]
    Pernthaler, A., Preston, C.M., Pernthaler, J., DeLong, E.F., Amann, R. (2002) Comparison of fluorescently labeled oligonucleotide and polynucleotide probes for the detection of pelagic marine bacteria and archaea. Appl. Environ. Microbiol. 68, 661667.
  • [78]
    Fuhrman, J.A., Davis, A.A. (1997) Widespread archaea and novel bacteria from the deep sea as shown by 16S rRNA gene sequences. Mar. Ecol. Prog. Ser. 150, 275285.
  • [79]
    McCollom, T.M., Shock, E.L. (1997) Geochemical constraints on chemolithoautotrophic metabolism by microorganisms in seafloor hydrothermal systems. Geochim. Cosmochim. Acta 61, 43754391.
  • [80]
    Rinker, K.D., Kelly, R.M. (2000) Effect of carbon and nitrogen sources on growth dynamics and exopolysaccharide production for the hyperthermophilic archaeon Thermococcus litoralis and bacterium Thermotoga maritima. Biotechnol. Bioeng. 69, 537547.
  • [81]
    Jannasch, H.W., Mottl, M.J. (1985) Geomicrobiology of deep-sea hydrothermal vents. Science 229, 717725.
  • [82]
    Hildebrand, J.A., Stevenson, J.M., Hammer, P.T.C., Zumberge, M.A., Parker, R.L. (1990) A seafloor and sea surface gravity survey of Axial Volcano. J. Geophys. Res. 95, 1275112763.
  • [83]
    Dziak, R.P., Johnson, H.P. (2002) Stirring the oceanic incubator. Science 296, 14061407.