SEARCH

SEARCH BY CITATION

References

  • Achouak W, Christen R, Barakat M, Martel MH & Heulin T (1999) Burkholderia caribensis sp. nov., an exopolysaccharide-producing bacterium isolated from vertisol microaggregates in Martinique. Int J Syst Bacteriol 49: 787794.
  • Altschul SF, Gish W, Miller W, Myers EW & Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215: 403410.
  • Babalola OO, Osir EO, Sanni AI, Odhiambo GD & Bulimo WD (2003) Amplification of 1-amino-cyclopropane-1-carboxylic (ACC) deaminase from plant growth promoting rhizobacteria in Striga-infested soil. Afr J Biotechnol 2: 157160.
  • Balandreau J, Viallard V, Cournoyer B, Coenye T, Laevens S & Vandamme P (2001) Burkholderia cepacia genomovar III is a common plant-associated bacterium. Appl Environ Microbiol 67: 982985.
  • Bally R & Elmerich C (2005) Biocontrol of plant diseases by associative and endophytic nitrogen-fixing bacteria. Associative and Endophytic Nitrogen-Fixing Bacteria and Cyanobacterial Associations, (ElmerichC & NewtonWE, eds), pp. 171190. Kluwer Academic Publishers, Dordrecht (in press).
  • Bally R, Thomas-Bauzon D, Heulin T, Balandreau J, Richard C & De Ley J (1983) Determination of the most frequent N2-fixing bacteria in the rice rhizosphere. Can J Microbiol 29: 881887.
  • Bashan Y & De-Bashan LE (2002) Protection of tomato seedlings against infection by Pseudomonas syringae pv. tomato by using the plant growth-promoting bacterium Azospirillum brasilense. Appl Environ Microbiol 68: 26372643.
  • Belimov AA, Safronova VI, Sergeyeva TA, et al. (2001) Characterization of plant growth promoting rhizobacteria isolated from polluted soils and containing 1-aminocyclopropane-1-carboxylate deaminase. Can J Microbiol 47: 642652.
  • Beringer JE (1974) R-factor transfer in Rhizobium leguminosarum. J Gen Microbiol 84: 188198.
  • Berry V & Gascuel O (1996) Interpretation of bootstrap trees: threshold of clade selection and induced gain. Mol Biol Evol 13: 9991011.
  • Boucher CA, Barberis PA, Trigalet AP & Demery DA (1985) Transposon mutagenesis of Pseudomonas solanacearum: isolation of Tn5-induced avirulent mutants. J Gen Microbiol 13: 24492457.
  • Bruce KD, Hiorns WD, Hobman JL, Osborn AM, Strike P & Ritchie DA (1992) Amplification of DNA from native populations of soil bacteria by using the polymerase chain reaction. Appl Environ Microbiol 58: 34133416.
  • Burbage DA & Sasser M (1982) A medium selective for Pseudomonas cepacia. Phytopathology 72: 706.
  • Burd GI, Dixon DG & Glick BR (1998) A plant growth-promoting bacterium that decreases nickel toxicity in seedlings. Appl Environ Microbiol 64: 36633668.
  • Coenye T, Laevens S, Willems A, Ohlen M, Hannant W, Govan JR, Gillis M, Falsen E & Vandamme P (2001a) Burkholderia fungorum sp. nov. and Burkholderia caledonica sp. nov., two new species isolated from the environment, animals and human clinical samples. Int J Syst Evol Microbiol 51: 10991107.
  • Coenye T, LiPuma JJ, Henry D, Hoste B, Vandemeulebroecke K, Gillis M, Speert DP & Vandamme P (2001b) Burkholderia cepacia genomovar VI, a new member of the Burkholderia cepacia complex isolated from cystic fibrosis patients. Int J Syst Evol Microbiol 51: 271279.
  • Devereux J, Haeberli P & Smithies O (1984) A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res 12: 387395.
  • Dobbelaere S, Croonenborghs A, Thys A, et al. (2001) Responses of agronomically important crops to inoculation with Azospirillum. Austr J Plant Physiol 28: 871879.
  • Elbeltagy A, Nishioka K, Sato T, Suzuki H, Ye B, Hamada T, Isawa T, Mitsui H & Minamisawa K (2001) Endophytic colonization and in planta nitrogen fixation by a Herbaspirillum sp. isolated from wild rice species. Appl Environ Microbiol 67: 52855293.
  • Eskew DL, Focht DD & Ting P (1977) Nitrogen fixation, denitrification and pleomorphic growth in a highly pigmented Spirillum lipoferum. Appl Environ Microb 34: 582585.
  • Estrada P, Mavingui P, Cournoyer B, Fontaine F, Balandreau J & Caballero-Mellado J (2002) A N2-fixing endophytic Burkholderia sp. associated with maize plants cultivated in Mexico. Can J Microbiol 48: 285294.
  • Fages J & Mulard D (1988) Isolement de bactéries rhizosphériques et effet de leur inoculation en pots chez Zea mays. Agronomie 8: 309314.
  • Fenton AM, Stephens PM, Crowley J, O'Callaghan M & O'Gara F (1992) Exploitation of gene(s) involved in 2,4-diacetylphloroglucinol biosynthesis to confer a new biocontrol capability to a Pseudomonas strain. Appl Environ Microbiol 58: 38733878.
  • Fuchs J & Défago G (1991) Protection of cucumber plants against black root rot caused by Phomopsis sclerotioides with rhizobacteria. Plant Growth-Promoting Rhizobacteria – Progress and Prospects (IOBC/WPRS Bull XIV/8), (KeelC, KollerB & DéfagoG, eds), pp. 5762. IOBC/WPRS, Interlaken, Switzerland.
  • Galtier N, Gouy M & Gautier C (1996) SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny. Comput Appl Biosci 12: 543548.
  • Gelvin SB (2000) Agrobacterium and plant genes involved in T-DNA transfer and integration. Annu Rev Plant Physiol Plant Mol Biol 51: 223256.
  • Gillis M, Van Tran V, Bardin R, Goor M, Hebbar P, Willems A, Segers P, Kersters K, Heulin T & Fernandez MP (1995) Polyphasic taxonomy in the genus Burkholderia leading to an amended description of the genus and proposition of Burkholderia vietnamiensis sp. nov. for N2-fixing isolates from rice in Vietnam. Int J Syst Bacteriol 45: 274289.
  • Glick BR, Jacobson CB, Schwarze MMK & Pasternak JJ (1994) 1-aminocyclopropane-1-carboxylic acid deaminase mutants of the plant growth promoting rhizobacterium Pseudomonas putida GR12-2 do not stimulate canola root elongation. Can J Microbiol 40: 911915.
  • Glick BR, Karaturovíc DM & Newell PC (1995) A novel procedure for rapid isolation of plant growth-promoting pseudomonads. Can J Microbiol 41: 533536.
  • Glick BR, Penrose DM & Li J (1998) A model for the lowering of plant ethylene concentrations by plant growth-promoting bacteria. J Theor Biol 190: 6368.
  • Govan JRW, Brown PH, Maddison J, Doherty CJ, Nelson JW, Dodd M, Greening AP & Webb AK (1993) Evidence for transmission of Pseudomonas cepacia by social contact in cystic fibrosis. Lancet 342: 1519.
  • Haas D & Keel C (2003) Regulation of antibiotic production in root-colonizing Pseudomonas spp. and relevance for biological control of plant disease. Annu Rev Phytopathol 41: 117153.
  • Holguin G & Glick BR (2001) Expression of the ACC deaminase gene from Enterobacter cloacae UW4 in Azospirillum brasilense. Microb Ecol 41: 281288.
  • Holguin G & Glick BR (2003) Transformation of Azospirillum brasilense Cd with an ACC deaminase gene from Enterobacter cloacae UW4 fused to the Tetr gene promoter improves its fitness and plant growth promoting ability. Microb Ecol 46: 122133.
  • Honma M (1985) Chemically reactive sulfhydryl groups of 1-aminocyclopropane-1-carboxylate deaminase. Agric Biol Chem 49: 567571.
  • Honma M & Shimomura T (1978) Metabolism of l-aminocyclopropane-1-carboxylic acid. Agric Biol Chem 42: 18251831.
  • Jia YJ, Ito H, Matsui H & Honma M (2000) 1-aminocyclopropane-1-carboxylate (ACC) deaminase induced by ACC synthesized and accumulated in Penicillium citrinum intracellular spaces. Biosci Biotechnol Biochem 64: 299305.
  • Kabir M, Faure D, Heulin T, Achouak W & Bally R (1996) Azospirillum populations in soils infested by a parasitic weed (Striga) under Sorghum cultivation in Mali, West Africa. Eur J Soil Biol 32: 157163.
  • Keane PJ, Kerr A & New PB (1970) Crown gall of stone fruit. II. Identification and nomenclature of Agrobacterium isolates. Aust J Biol Sci 23: 585595.
  • Keel C, Weller DM, Natsch A, Défago G, Cook RJ & Thomashow LS (1996) Conservation of the 2,4-diacetylphloroglucinol biosynthesis locus among fluorescent Pseudomonas strains from diverse geographic locations. Appl Environ Microbiol 62: 552563.
  • Khammas KM, Ageron E, Grimont PA & Kaiser P (1989) Azospirillum irakense sp. nov., a nitrogen-fixing bacterium associated with rice roots and rhizosphere soil. Res Microbiol 140: 679693.
  • King EO, Ward MK & Raney DE (1954) Two simple media for the demonstration of pyocyanin and fluorescin. J Lab Clin Med 44: 301307.
  • Kiredjian M (1979) Le genre Agrobacterium peut-il être pathogène pour l'homme? Med Malad Infect 9: 223235.
  • Kumar S, Tamura K, Jakobsen IB & Nei M (2001) MEGA2: molecular evolutionary genetics analysis software. Bioinformatics 17: 12441245.
  • Lavire L (1998) Variation de phase chez Azospirillum: un mécanisme d'adaptation à la rhizosphère? DEA thesis, Université Claude Bernard Lyon1, Villeurbanne, France.
  • Lerat E & Moran NA (2004) The evolutionary history of quorum-sensing systems in bacteria. Mol Biol Evol 21: 903913.
  • Li J, Ovakim DH, Charles TC & Glick BR (2000) An ACC deaminase minus mutant of Enterobacter cloacae UW4 no longer promotes root elongation. Curr Microbiol 41: 101105.
  • Ma W, Guinel FC & Glick BR (2003a) Rhizobium leguminosarum biovar viciae 1-aminocyclopropane-1-carboxylate deaminase promotes nodulation of pea plants. Appl Environ Microbiol 69: 43964402.
  • Ma W, Sebestianova SB, Sebestian J, Burd GI, Guinel FC & Glick BR (2003b) Prevalence of 1-aminocyclopropane-1-carboxylate deaminase in Rhizobium spp. Antonie van Leeuwenhoek 83: 285291.
  • Mazurier S, Lemunier M, Siblot S, Mougel C & Lemanceau P (2004) Distribution and diversity of type III secretion system-like genes in saprophytic and phytopathogenic fluorescent pseudomonads. FEMS Microbiol Ecol 49: 455467.
  • Miché L, Bouillant ML, Rohr R & Bally R (2000) Physiological and cytological studies of the inhibitory effect of soil bacteria of the genus Azospirillum on striga seeds germination. Eur J Plant Pathol 106: 347351.
  • Minami R, Uchiyama K, Murakami T, Kawai J, Mikami K, Yamada T, Yokoi D, Ito H, Matsui H & Honma M (1998) Properties, sequence, and synthesis in Escherichia coli of 1-aminocyclopropane-1-carboxylate deaminase from Hansenula saturnus. J Biochem (Tokyo) 123: 11121118.
  • Moënne-Loccoz Y & Défago G (2004) Life as a biocontrol pseudomonad, Pseudomonas. Genomics, Life Style and Molecular Architecture, Vol. 1, (RamosJL, ed.), pp. 457476. Kluwer Academic/Plenum Publishers, New York.
  • Mougel C, Thioulouse J, Perrière G & Nesme X (2002) A mathematical method for determining genome divergence and species delineation using AFLP. Int J Syst Evol Microbiol 52: 573586.
  • Murakami T, Kiuchi M, Ito H, Matsui H & Honma M (1997) Substitutions of alanine for cysteine at a reactive thiol site and for lysine at a pyridoxal phosphate binding site of 1-aminocyclopropane-1-carboxylate deaminase. Biosci Biotechnol Biochem 61: 506509.
  • Nelson LM & Knowles R (1978) Effect of oxygen and nitrate on nitrogen fixation and denitrification by Azospirillumbrasilense grown in continuous culture. Can J Microbiol 24: 13951403.
  • Nierman WC, DeShazer D, Kim HS, et al. (2004) Structural flexibility in the Burkholderia mallei genome. Proc Natl Acad Sci USA 101: 1424614251.
  • Ochman H & Moran NA (2001) Genes lost and genes found: evolution of bacterial pathogenesis and symbiosis. Science 292: 10961098.
  • Olson JW, Agar JN, Johnson MK & Maier RJ (2000) Characterization of the NifU and NifS Fe-S cluster formation proteins essential for viability in Helicobacter pylori. Biochemistry 39: 1621316219.
  • Penot I, Bergès N, Guinguené C & Fages J (1992) Characterization of Azospirillum associated with maize (Zea mays) in France using biochemical tests and plasmid profiles. Can J Microbiol 38: 798803.
  • Penrose DM & Glick BR (2003) Methods for isolating and characterizing ACC deaminase-containing plant growth-promoting rhizobacteria. Physiologia Plantarum 118: 1015.
  • Ramette A, Frapolli M, Défago G & Moënne-Loccoz Y (2003) Phylogeny of HCN synthase-encoding hcnBC genes in biocontrol fluorescent pseudomonads and its relationship with host plant species and HCN synthesis ability. Mol Plant–Microbe Interact 16: 525535.
  • Rezzonico F, Défago G & Moënne-Loccoz Y. (2004) Comparison of ATPase-encoding type III secretion system hrcN genes in biocontrol fluorescent pseudomonads and in phytopathogenic proteobacteria. Appl Environ Microbiol 70: 51195131.
  • Rhaman M (1987) Amelioration de la fixation d'azoste dans la rhizosphère du riz cultivé sur différents sols du Bengladesh. PhD thesis, Université Claude Bernard Lyon 1, Villeurbanne, France.
  • Rinaudo G (1982) Fixation hétérotrophe de l'azote dans la rhizosphère du riz. Thèse de Doctorat d'Etat, Université Paris-Sud, Orsay, France.
  • Saitou N & Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406425.
  • Soutourina J, Blanquet S & Plateau P (2001) Role of d-cysteine desulfhydrase in the adaptation of Escherichia coli to d-cysteine. J Biol Chem 276: 4086440872.
  • Stutz EW, Défago G & Kern H (1986) Naturally occurring fluorescent pseudomonads involved in suppression of black root rot of tobacco. Phytopathology 76: 181185.
  • Sullivan JT, Trzebiatowski JR, Cruickshank RW, et al. (2002) Comparative sequence analysis of the symbiosis island of Mesorhizobium loti strain R7A. J Bacteriol 184: 30863095.
  • Tarrand JJ, Krieg NR & Döbereiner J (1978) A taxonomic study of the Spirillum lipoferum group, with descriptions of a new genus, Azospirillum gen. nov. and two species, Azospirillum lipoferum (Beijerinck) comb. nov. and Azospirillum brasilense sp. nov. Can J Microbiol 24: 967980.
  • Thompson JD, Higgins DG & Gibson TJ (1994) Clustal W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22: 46734680.
  • Van Tran T, Ngoke S, Berge O, Faure D, Bally R, Hebbar P & Heulin T (1997) Isolation of Azospirillumlipoferum from the rhizosphere of rice by a new simple method. Can J Microbiol 43: 486490.
  • Urakami T, Ito-Yoshida C, Araki H, Kijima T, Suzuki K & Komagata K (1994) Transfer of Pseudomonas plantarii and Pseudomonas glumae to Burkholderia as Burkholderia spp. and description of Burkholderia vandii sp. nov. Int J Syst Bacteriol 44: 235245.
  • Vandamme P, Holmes B, Vancanneyt M, et al. (1997) Occurrence of multiple genomovars of Burkholderia cepacia in cystic fibrosis patients and proposal of Burkholderia multivorans sp. nov. Int J Syst Bacteriol 47: 11881200.
  • Vandamme P, Mahenthiralingam E, Holmes B, Coenye T, Hoste B, De Vos P, Henry D & Speert DP (2000) Identification and population structure of Burkholderia stabilis sp. nov. (formerly Burkholderia cepacia genomovar IV). J Clin Microbiol 38: 10421047.
  • Viallard V, Poirier I, Cournoyer B, Haurat J, Wiebkin S, Ophel-Keller K & Balandreau J (1998) Burkholderia graminis sp. nov., a rhizospheric Burkholderia species, and reassessment of [Pseudomonas] phenazinium, [Pseudomonas] pyrrocinia and [Pseudomonas] glathei as Burkholderia. Int J Syst Bacteriol 48: 549563.
  • Wang C, Knill E, Glick BR & Défago G (2000) Effect of transferring 1-aminocyclopropane-1-carboxylic acid (ACC) deaminase genes into Pseudomonas fluorescens strain CHA0 and its gacA derivative CHA96 on their growth-promoting and disease-suppressive capacities. Can J Microbiol 46: 898907.
  • Wang C, Ramette A, Punjasamarnwong P, Zala M, Natsch A, Moënne-Loccoz Y & Défago G (2001) Cosmopolitan distribution of phlD-containing dicotyledonous crop-associated biocontrol pseudomonads of worldwide origin. FEMS Microbiol Ecol 37: 105116.
  • Yabuuchi E, Kosako Y, Oyaizu H, Yano I, Hotta H, Hashimoto Y, Ezaki T & Arakawa M (1992) Proposal of Burkholderia gen. nov. and transfer of seven species of the genus Pseudomonas homology group II to the new genus, with the type species Burkholderiacepacia (Palleroni and Holmes 1981) comb. nov. Microbiol Immunol 36: 12511275.
  • Yanagi M & Yamasato K (1993) Phylogenetic analysis of the family Rhizobiaceae and related bacteria by sequencing of 16S rRNA gene using PCR and DNA sequencer. FEMS Microbiol Lett 107: 115120.
  • Yao M, Ose T, Sugimoto H, Horiuchi A, Nakagawa A, Wakatsuki S, Yokoi D, Murakami T, Honma M & Tanaka I (2000) Crystal structure of 1-aminocyclopropane-1-carboxylate deaminase from Hansenula saturnus. J Biol Chem 44: 3455734565.
  • Zhang H, Hanada S, Shigematsu T, Shibuya K, Kamagata Y, Kanagawa T & Kurane R (2000) Burkholderia kururiensis sp. nov., a trichloroethylene (TCE)-degrading bacterium isolated from an aquifer polluted with TCE. Int J Syst Evol Microbiol 50: 743749.