SEARCH

SEARCH BY CITATION

References

  • Altschul SF, Madden TL, Schäffer AA, Jinghui Z, Zheng Z, Miller W & Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 33893402.
  • Bassam BJ, Caetano-Anolles G & Gresshoff PM (1991) Fast and sensitive silver staining of DNA in polyacrylamide gels. Anal Biochem 80: 8184.
  • Berg G, Eberl L & Hartmann A (2005a) The rhizosphere as a reservoir for opportunistic human pathogenic bacteria. Environ Microbiol 7: 16731685.
  • Berg G, Krechel A, Ditz M, Faupel A, Ulrich A & Hallmann J (2005b) Endophytic and ectophytic potato-associated bacterial communities differ in structure and antagonistic function against plant pathogenic fungi. FEMS Microbiol Ecol 51: 215229.
  • Blouin-Bankhead S, Landa BB, Lutton E, Weller DM & McSpadden Gardener BB (2004) Minimal changes in the rhizobacterial population structure following root colonization by wild type and transgenic biocontrol strains. FEMS Microbiol Ecol 49: 307318.
  • Carling DE, Kuninaga S & Brainard KA (2002) Hyphal anastomosis reactions, rDNA-internal transcribed spacer sequences, and virulence levels among subsets of Rhizoctonia solani anastomosis group-2 (AG-2) and AG-BI. Phytopathology 92: 4350.
  • Costa R, Götz M, Mrotzek N, Lottmann J, Berg G & Smalla K (2006) Effects of site and plant species on rhizosphere community structure as revealed by molecular analysis of microbial guilds. FEMS Microbiol Ecol 56: 236249.
  • Cottyn B, Vanhouteghem K, Heyrman J et al. (2005) Pseudomonads associated with midrib rot and soft rot of butterhead lettuce and endive. Commun Agric Appl Biol Sci 70: 101109.
  • Davis H, Taylor JP, Perdue JN et al. (1988) A shigellosis outbreak traced to commercially distributed shredded lettuce. Am J Epidemiol 128: 13121321.
  • Davis RM, Subbarao KV, Raid RN & Kurtz EA (1997) Compendium of Lettuce Diseases, pp. 1516. APS Press, St Paul, MN.
  • Dice (1945) Measures of the amount of ecological association between species. Ecology 26: 297302.
  • Faltin F, Lottmann J, Grosch R & Berg G (2004) Strategy to select and assess antagonistic bacteria for biological control of Rhizoctonia solani Kühn. Can J Microbiol 50: 811820.
  • Fiddaman PJ, O'Neill TM & Rossall DS (2000) Screening of bacteria for the suppression of Botrytis cinerea and Rhizoctonia solani on lettuce (Lactuca sativa) using disc bioassays. Ann Appl Biol 137: 223235.
  • Glandorf DCM, Verheggen P, Jansen T et al. (2001) Effect of genetically modified Pseudomonas putida WCS358r on the fungal rhizosphere micro-flora of field-grown wheat. Appl Environ Microbiol 67: 33713378.
  • Grosch R, Schneider JHM & Kofoet A (2004) Characterisation of Rhizoctonia solani anastomosis groups causing bottom rot in field-grown lettuce in Germany. Europ J Plant Pathol 110: 5362.
  • Grosch R, Faltin F, Lottmann J, Kofoet A & Berg G (2005) Effectiveness of 3 antagonistic bacterial isolates to control Rhizoctonia solani Kühn on lettuce and potato. Can J Microbiol 51: 345353.
  • Haas D & Défago G (2005) Biological control of soil-borne pathogens by fluorescent pseudomonads. Nat Rev Microbiol 3: 307319.
  • Kofoet A, Fricke A, Heine H et al. (2001) Kopfsalatsorten und ihre Anfälligkeit gegenüber bodenbürtigen Pathogenen. Gemüse 37: 1013.
  • Li ZK, Pinson SRM, Marchetti MA, Stansel JW & Park WD (1995) Characterization of quantitative trait loci (QTLs) in cultivated rice contributing to field resistance to sheath blight (Rhizoctonia solani). Theor Appl Genet 91: 382388.
  • Lieber A, Kiesel B & Babel W (2002) Microbial diversity analysis of soil by SSCP fingerprinting technique using TGGE Maxi System. 13. Borkheider Seminar zur Ökophysiologie des Wurzelraumes (MerbachW, HütschBW & AugustinJ, eds), pp. 6165. Teubner, Leipzig.
  • Loncarevic S, Johannessen GS & Rorvik LM (2005) Bacteriological quality of organically grown leaf lettuce in Norway. Lett Appl Microbiol 41: 186189.
  • Lottmann J, Heuer H, Smalla K & Berg G (1999) Influence of transgenic T4-lysozyme-producing plants on beneficial plant-associated bacteria. FEMS Microbiol Ecol 29: 365377.
  • Ludwig W, Strunk O, Westram R et al. (2004) ARB: a software environment for sequence data. Nucleic Acid Res 32: 13631371.
  • Maloney PE, Van Bruggen AHC & Hu S (1997) Bacterial community structure in relation to the carbon environments in lettuce and tomato rhizospheres and in bulk soil. Microbiol Ecol 34: 109117.
  • Maplestone PA, Whipps JM & Lynch JM (1991) Effect of peat-bran inoculum of Trichoderma species on biological control of Rhizoctonia solani on lettuce. Plant Soil 136: 257263.
  • Martin-Laurent F, Philippot L, Hallet S et al. (2001) DNA extraction from soils: old bias for new microbial diversity analysis methods. Appl Environ Microbiol 67: 23542359.
  • Milling A, Smalla K, Maidl FX, Schloter M & Munch JC (2004) Effects of transgenic potatoes with an altered starch composition on the diversity of soil and rhizosphere bacteria and fungi. Plant Soil 266: 2339.
  • Minkwitz A & Berg G (2001) Comparison of antifungal activities and 16S ribosomal DNA sequences of clinical and environmental isolates of Stenotrophomonas maltophilia. J Clin Microbiol 39: 139145.
  • Nguyen-The C & Prunier JP (1989) Involvement of pseudomonads in deterioration of ‘ready-to-use’ salads. Int J Food Sci Technol 24: 4758.
  • Scherwinski K, Wolf A & Berg G (2006) Assessing the risk of biological biocontrol agents on the indigenous microbial communities: Serratia plymuthica HRO-C48 and Streptomyces sp. HRO-71 as model bacteria. Bio Control 52: 87112.
  • Schwieger F & Tebbe CC (1998) A new approach to utilize PCR-single strand-conformation polymorphism for 16S rRNA gene-based microbial community analysis. Appl Environ Microbiol 64: 48704876.
  • Schwieger F & Tebbe CC (2000) Effect of field inoculation with Sinorhizobium meliloti L33 on the composition of bacterial communities in rhizospheres of a target plant (Medicago sativa) and a non-target plant (Chenopodium album)-linking of 16S rRNA gene-based single-strand conformation polymorphism community profiles to the diversity of cultivated bacteria. Appl Environ Microbiol 66: 35563565.
  • Smalla K (2004) Culture-independent microbiology. Microbial Diversity and Bioprospecting (BullAT, ed), pp. 8899. ASM, Washington, DC.
  • Smalla K, Wieland G, Buchner A, Zock A, Parzy J, Roskot N, Heuer H & Berg G (2001) Bulk and rhizosphere soil bacterial communities studied by denaturing gradient gel electrophoresis: plant-dependent enrichment and seasonal shifts revealed. Appl Environ Microbiol 67: 47424751.
  • Vancanneyt M, Vandamme P, Segers P, Torck U, Coopman R, Kersters K & Hinz K-H (1999) Riemerella columbina sp. nov., a bacterium associated with respiratory disease in pigeons. Int J Syst Bacteriol 49: 289295.
  • Viebahn M, Glandorf DC, Ouwens TW et al. (2003) Repeated introduction of genetically modified Pseudomonas putida WCS358r without intensified effects on the indigenous microflora of field-grown wheat. Appl Environ Microbiol 69: 31103118.
  • Whipps JM (2001) Microbial interactions and biocontrol in the rhizosphere. J Exp Bot 52: 487511.
  • White TJ, Bruns TD, Lee S & Taylor J (1990) Analysis of phylogenetic relationship by amplification and direct sequencing of ribosomal RNA genes. PCR Protocols: A Guide to Methods and Applications (InnisMA, GelfandDH, SninskyJJ & WhiteTJ, eds), pp. 315322. Academic Press, New York.
  • Winding A, Binnerup SJ & Pritchard H (2004) Non-target effects of bacterial biological control agents suppressing root pathogenic fungi. FEMS Microbiol Ecol 47: 129141.
  • Wolf PFJ & Verreet JA (1999) Untersuchungen zur Epidemiologie und Schadrelevanz der Rhizoctonia-Rübenfäule (Rhizoctonia solani Kühn). Gesunde Pflanzen 51: 133140.