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References

  • Altschul SF, Gish W, Miller W, Myers EW & Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215: 403410.
  • Borodovsky M & McIninch J (1993) GeneMark: parallel gene recognition for both DNA strands. Comput Chem 17: 123133.
  • Burford MA & O'Donohue MJ (2006) A comparison of phytoplankton community assemblages in artificially and naturally mixed subtropical water reservoirs. Freshwater Biol 51: 973982.
  • Carmichael WW, He JW, Carmichael WW, Eschendor J, He ZR & Juan YM (1988) Partial structural determination of hepatotoxic peptides from Microcystis aeruginosa (cyanobacterium) collecterd in ponds of central China. Toxicon 26: 12131217.
  • Chefetz B, Tarchitzky J, Deshmukh AP, Hatcher PG & Chen Y (2002) Structural characterization of soil organic matter and humic acids in particle-size fractions of an agricultural soil. Soil Sci Soc Am J 66: 129141.
  • Colberg PJ & Young LY (1985) Aromatic and Volatile Acid Intermediates Observed during Anaerobic Metabolism of Lignin-Derived Oligomers. Appl Environ Microbiol 49: 350358.
  • Curtis TP, Sloan WT & Scannell JW (2002) Estimating prokaryotic diversity and its limits. Proc Natl Acad Sci USA 99: 10494.
  • Felsenstein J (2006) PHYLIP (Phylogeny Inference Package) version 3.66. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle.
  • Ferrandez A, Prieto MA, Garcia JL & Diaz E (1997) Molecular characterization of PadA, a phenylacetaldehyde dehydrogenase from Escherichia coli. FEBS Lett 406: 2327.
  • Glockner FO, Fuchs B & Amann R (1999) Bacterioplankton composition of lakes and oceans: a comparison based on fluorescence in situ hybridization. Appl Environ Microbiol 65: 37213726.
  • Hall TA (1998) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41: 9598.
  • Harada K-i, Ohtani I, Iwamoto K, Suzuki M, Watanabe MF, Watanabe M & Terao K (1994) Isolation of cylindrospermopsin from a cyanobacterium Umezakia natans and its screening method. Toxicon 32: 7384.
  • Izaguirre G & Taylor WD (2004) A guide to geosmin- and MIB-producing cyanobacteria in the United States. Water Sci Technol 49: 1924.
  • Jain R, Rivera MC & Lake JA (1999) Horizontal gene transfer among genomes: the complexity hypothesis. 96: 38013806.
  • Jiménez JI, Miñambres B, García JL & Díaz E (2002) Genomic analysis of the aromatic catabolic pathways from Pseudomonas putida KT2440. Environ Microbiol 4: 824841.
  • Markowitz VM, Korzeniewski F, Palaniappan K et al. (2006) The integrated microbial genomes (IMG) system. Nucleic Acids Res 34: D344D348.
  • Mohamed M, Ismail W, Heider J & Fuchs G (2002) Aerobic metabolism of phenylacetic acids in Azoarcus evansii. Archiv Microbiol 178: 180192.
  • Namikoshi M & Rinehart KL (1996) Bioactive compounds produced by cyanobacteria. J Ind Microbiol 17: 373384.
  • Nesbø CL, Boucher Y, Dlutek M & Ford Doolittle W (2005) Lateral gene transfer and phylogenetic assignment of environmental fosmid clones. Environ Microbiol 7: 20112026.
  • Olivera ER, Minambres B, Garcõa B, Muniz C, Moreno MA & Ferrandez A (1998) Molecular characterization of the phenylacetic acid catabolic pathway in Pseudomonas putida U: the phenylacetyl-CoA catabolon. Proc Natl Acad Sci USA 95: 64196424.
  • Ollagnier-de Choudens S, Loiseau L, Sanakis Y, Barras F & Fontecave M (2005) Quinolinate synthetase, an iron–sulfur enzyme in NAD biosynthesis. FEBS Lett 579: 37373743.
  • Redburn AC & Patel BKC (1993) Phylogenetic analysis of Desulfotomaculum thermobenzoicum using polymerase chain-amplified 16S rRNA-specific DNA. FEMS Microbiol Lett 115: 3338.
  • Rozen S & Skaletsky HJ (2000) Primer3 on the WWW for general users and for biologist programmers. Bioinformatics Methods and Protocols: Methods in Molecular Biology (KrawetzS & MisenerS, eds), pp. 365386. Humana Press, Totowa, NJ.
  • Sambrook J, Fritsch EF & Maniatis T (1989) Molecular Cloning: A Laboratory Manual. Cold Spring Harbour Laboratory Press, Cold Spring Harbour, New York.
  • Schloss PD & Handelsman J (2005) Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Appl Environ Microbiol 71: 15011506.
  • Spanevello MD & Patel BKC (2004) The phylogenetic diversity of Thermus and Meiothermus from microbial mats of an Australian subsurface aquifer runoff channel. FEMS Microbiol Ecol 50: 6373.
  • Stein JL, Marsh TL, Wu KY, Shizuya H & DeLong EF (1996) Characterization of uncultivated prokaryotes: isolation and analysis of a 40-kilobase-pair genome fragment front a planktonic marine archaeon. J Bacteriol 178: 591.
  • Torsvik V, Ovreas L & Thingstad TF (2002) Prokaryotic diversity – magnitude, dynamics, and controlling factors. Science 296: 10641066.
  • Van de Peer Y & De Wachter R (1994) TREECON for windows: a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment. Comput Appl Biosci 10: 569570.
  • Velasco A, Alonso S, Garcia JL, Perera J & Diaz E (1998) Genetic and functional analysis of the styrene catabolic cluster of Pseudomonas sp. strain Y2. J Bacteriol 180: 10631071.
  • Wang Q, Garrity GM, Tiedje JM & Cole JR (2007) Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol 73: 52615267.
  • Wiegand C & Pflugmacher S (2005) Ecotoxicological effects of selected cyanobacterial secondary metabolites: a short review. Toxicol Appl Pharmacol 203: 201218.
  • Wolfgang L, Strunk O, Klugbauer S et al. (1998) Bacterial phylogeny based on comparative sequence analysis. Electrophoresis 19: 554568.