SEARCH

SEARCH BY CITATION

References

  • Adl SM, Simpson AG, Farmer MA et al. (2005) The new higher level classification of eukaryotes with the emphasis on the taxonomy of protists. J Euk Microb 52: 399451.
  • Arrigo KR, Robinson DH, Worthern DL, Dunbar RB, DiTullio GR, VanWoert M & Lizotte MP (1999) Phytoplankton community structure and the drawdown of nutrients and CO2 in the Southern Ocean. Science 283: 365367.
  • Arrigo KR, Lubin D, Van Dijken GL, Holm-Hansen O & Morrow E (2003) Impact of a deep ozone hole on Southern Ocean primary production. J Geophys Res 108: 119.
  • Bass D & Cavalier-Smith T (2004) Phylum-specific environmental DNA analysis reveals remarkably high global biodiversity of Cercazoa (Protozoa). Int J Syst Evol Microbiol 54: 23932404.
  • Bidle KD & Azam F (1999) Accelerated dissolution of diatom silica by marine bacterial assemblages. Nature 397: 508512.
  • Buma AGJ, Boer DMK & Boelen P (2001) Depth distribution of DNA damage in Antarctic marine phyto- and bacterioplankton exposed to summertime UV radiation. J Phycol 37: 200208.
  • Butinar L, Santos S, Spencer-Martins I, Oren A & Gunde-Cimerman N (2005) Yeast diversity in hypersaline habitats. FEMS Microbiol Lett 244: 229234.
  • Casamayor EO, Massana R, Benlloch S, Øvreås L, Díez B, Goddard VJ, Gasol JM, Joint I, Rodríguez-Valera F & Pedrós-Alió C (2002) Changes in archeal, bacterial and eukaryal assemblages along a salinity gradient by comparison of genetic fingerprinting methods in a multipond solar saltern. Environ Microbiol 4: 338348.
  • Cavalier-Smith T & Chao EE-Y (2003) Phylogeny and classification of phylum Cercazoa (Protozoa). Protist 154: 341358.
  • Countway PD, Gast RJ, Savai P & Caron DA (2005) Protistan diversity estimates based on 18S rDNA from seawater incubations in the Western North Atlantic. J Euk Microb 52: 95106.
  • Davidson AT & Belbin L (2002) Exposure of natural Antarctic marine microbial assemblages to ambient UV radiation: effects on the marine microbial community. Aquat Microb Ecol 27: 159174.
  • Davidson AT & Marchant HJ (1992) Protist abundance and carbon concentration during a Phaeocystis-dominated bloom at an Antarctic coastal site. Pol Biol 12: 387395.
  • Davidson AT, Bramich D, Marchant HJ & McMinn A (1994) Effects of UV-B irradiation on growth and survival of Antarctic marine diatoms. Mar Biol 119: 507515.
  • Díez B, Pedrós-Alió C, Marsh TL & Massana R (2001) Application of denaturing gradient gel electrophoresis (DGGE) to study the diversity of marine picoeukaryotic assemblages and comparison of DGGE with other molecular techniques. App Env Microbiol 67: 29422951.
  • DiTullio GR, Grebmeier JM, Arrigo KR, Lizotte MP, Robinson DH, Leventer A, Barry JP, Van Woert ML & Dunbar RB (2000) Rapid and early export of Phaeocystis antarctica blooms in the Ross Sea, Antarctica. Nature 404: 595598.
  • DiTullio GR, Geesey ME, Jones DR, Daly KL, Campbell L & Smith WO Jr (2003) Phytoplankton assemblage structure and primary productivity along 170°W in the Southern Pacific Ocean. Mar Ecol Prog Ser 255: 5580.
  • El-Sayed SZ (1993) Phytoplankton. Antarctic Microbiology (FriedmanEI & ThistleAB, eds), pp. 67122. Wiley-Liss, New York.
  • El-Sayed SZ, Biggs DC & Holm-Hansen O (1983) Phytoplankton standing crop, primary productivity, and near-surface nitrogenous nutrient fields in the Ross Sea, Antarctica. Deep Sea Res Part A Oceanogr Res Pap 30: 871886.
  • Falkowski PG, Barber RT & Smetacek V (1998) Biogeochemical controls and feedbacks on ocean primary production. Science 281: 200206.
  • Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783791.
  • Gast RJ, Dennett MR & Caron DA (2004) Characterization of protistan assemblages in the Ross Sea, Antarctica, by denaturing gradient gel electrophoresis. App Environ Microbiol 70: 20282037.
  • Gast RJ, Moran DM, Beaudoin DJ, Blythe JN, Dennett MR & Caron DA (2006) Abundance of a novel dinoflagellate phylotype in the Ross Sea, Antarctica. J Phycol 42: 233242.
  • Gilinchinski D, Rivkina E, Bakermans C et al. (2005) Biodiversity of cryopegs in permafrost. FEMS Microbiol Ecol 53: 117128.
  • Hartl DL, Moriyama EN & Sawyer SA (1994) Selection intensity for codon bias. Genetics 138: 227234.
  • Holm-Hansen O, Helbling EW & Lubin D (1993) Ultraviolet radiation in Antarctica: inhibition of primary production. Photochem Photobiol 58: 567570.
  • Huntley ME, Lopez MD & Karl DM (1991) Top predators in the Southern Ocean: a major leak in the biological pump. Science 253: 6466.
  • Karentz D, Cleaver JE & Mitchell DL (1991) Cell survival characteristics and molecular responses of Antarctic phytoplankton to ultraviolet-B radiation. J Phycol 27: 326341.
  • Karl DM (1993) Microbial processes in the Southern Ocean. Antarctic Microbiology (FriedmannEI & ThistleAB, eds), pp. 163. Wiley-Liss, New York.
  • Kimura MJ (1980) A simple method of estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16: 150163.
  • Kivi K & Kuosa H (1994) Late winter microbial communities in the western Wedell Sea. Pol Biol 14: 389399.
  • Kuhn S, Lange M & Medlin LK (2000) Phylogenetic position of Cryothecomonas inferred from nuclear-encoded small subunit ribosomal RNA. Protist 151: 337345.
  • Kumar S, Tamura K & Nei M (2004) MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5: 150163.
  • Leaky RJG, Leadbeater BSC, Mitchell E, McCready SMM & Murray AWA (2002) The abundance and biomass of choanoflagellates and other nanoflagellates in waters of contrasting temperature to north-west of South-Georgia in the Southern Ocean. Eur J Protist 38: 333350.
  • Le Fèvre J, Legendre L & Rivkin RB (1998) Fluxes of biogenic carbon in the Southern Ocean: roles of large microphagous zooplankton. J Mar Syst 17: 325345.
  • López-Garciá P, Rodríguez-Valera F, Pedrós-Alió C & Moreira D (2001) Unexpected diversity of small eukaryotes in deep sea Antarctic plankton. Nature 409: 603607.
  • Lovejoy C, Massana R & Pedrós-Alió C (2006) Diversity and distribution of marine microbial eukaryotes in the Arctic Ocean and adjacent seas. App Environ Microbiol 72: 30853095.
  • Massana R & Jürgens K (2003) Composition and population dynamics of planktonic bacteria and bacteriovorous flagellates in seawater chemostat cultures. Aquat Microb Ecol 32: 1122.
  • Massana R, Pedrós-Alió C, Casamayor EO & Gasol JP (2001) Changes in marine bacterioplankton phylogenetic composition during incubations designed to measure biogeochemically significant parameters. Limnol Oceanogr 46: 11811188.
  • Massana R, Castresana J, Balagué V, Guillou L, Romari K, Groisiller A, Valentin K & Pedrós-Alió C (2004) Phylogenetic and ecological analysis of novel marine Stramenopiles. App Environ Microbiol 70: 35283534.
  • Medlin LK, Elwood HJ, Stikel S & Sogin M (1988) The characterization of enzymatically amplified eukaryotic 16S-like rRNA-coding regions. Gene 71: 491499.
  • Moon-van der Saay SY, Wachter De R & Vaulot D (2003) Oceanic 18S rDNA sequences from picoplankton reveal unsuspected eukaryotic diversity. Nature 409: 607610.
  • Moreira D & Lopez-Garcia P (2002) The molecular ecology of microbial eukaryotes unveils a hidden world. Trends Microbiol 10: 3138.
  • Mostajir B, Demers S, Mora Sd, Belzile C, Chanut J-P, Gosselin M, Roy S, Zulema Villegas P, Fauchot J & Bouchard J (1999) Experimental test of the effect of ultraviolet-B radiation in a planktonic community. Limnol Oceanogr 44: 586596.
  • Mousseau L, Gosselin M, Levasseur M, Demers S, Fauchot J, Roy S, Villeags PZ & Mostajir B (2000) Effects of ultraviolet-B radiation on simultaneous carbon and nitrogen transport rates by estuarine phytoplankton during a week-long mesocosm study. Mar Ecol Prog Ser 199: 6981.
  • Muyzer G, Brinkhoff T, Nübel U, Santegoeds C, Schäfer H & Wawer C (2004) Denaturing gradient gel electrophoresis (DGGE) in microbial ecology. Molecular Microbial Ecology Manual (KowalchukGA, De BruinFJ, HeadIM, AkkermansDL & Van ElsasJD, eds), pp. 743770. Kluwer Academic Publishers, Dordrecht.
  • Raven JA & Falkowski PG (1999) Oceanic sinks for atmospheric CO2. Plant Cell Environ 22: 741755.
  • Riaux-Gobin C, Poulin M, Prodon R & Treguer P (2003) Land-fast ice microalgal and phytoplanktonic communities (Adélie Land, Antarctica) in relation to environmental factors during ice break-up. Antarc Sci 15: 353364.
  • Saitou N & Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406425.
  • Savin MC, Martin JL, LeGresley M & Rooney-Varga J (2004) Plankton diversity in the Bay of Fundy as measured by morphological and molecular methods. Microb Ecol 48: 5163.
  • Sambrook J, Fritsch EF & Maniatis T (1989) Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.
  • Schäfer H, Servais P & Muyzer G (2000) Successional changes in the genetic diversity of a marine bacterial assemblage during confinement. Arch Microbiol 173: 138145.
  • Schäfer H, Bernard L, Courties C, Lebaron P, Servais P, Pukall R, Vives-Rego J & Muyzer G (2001) Microbial community dynamics in Mediterranean nutrient-enriched seawater mesocosms: changes in genetic diversity of bacterial populations. FEMS Microbiol Ecol 34: 243253.
  • Shepherd A & Wingham D (2007) Rescent sea-level contributions of the Antarctic and Greenland ice sheet. Science 315: 15291532.
  • Tamura K, Dudley J, Nei M & Kumar S (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24: 15961599.
  • Ter Braak CJF & Šmilauer P (1998) CANOCO Reference Manual and User's Guide to Canoco for Windows: Software for Canonical Community Ordination (Version 4.5.2). Microcomputer Power Ed., Ithaca, New York.
  • Thomsen HA, Bucks KR, Coale SL, Garrison DL & Gowing MM (1990) Loricate choanoflagellates (Acanthoecidea, Choanoflagellida) from the Wedell Sea, Antarctica. Zool Scr 19: 367287.
  • Thomson PG, McMinn A, Kiessling I, Watson M & Goldsworthy PM (2006) Composition and succession of dinoflagellates and chrysophytes in the upper fast ice of Davis Station, Eastern Antarctica. Pol Biol 29: 337345.
  • Tillman U (2004) Interactions between plankton microalgae and protozoan grazers. J Euk Microb 52: 156168.
  • Vázquez-Domínguez E, Casamayor EO, Català P & Lebaron P (2005) Different marine heterotrophic nanoflagellates affect differentially the composition of enriched bacterial communities. Microb Ecol 49: 474485.
  • Villafañe VE, Helbling EW, Holm-Hansen O & Chalker BE (1995) Acclimatization of Antarctic natural phytoplankton assemblages when exposed to solar ultraviolet radiation. J Plankton Res 17: 22952306.
  • Wängberg S-Å & Wulff A (2004) Impact of UVB radiation on the development of phytoplankton communities in the eastern Atlantic sector of the Southern Ocean – results from an on-deck model ecosystem experiments. Deep Sea Res Part II Oceanogr Res Pap 51: 27312744.
  • Weber LH & El-Sayed SZ (1987) Contributions of the net, nano- and picoplankton to the phytoplankton standing crop and primary productivity in the Southern Ocean. J Plankton Res 9: 973994.
  • Winter C, Moeseneder MM & Herndl GJ (2001) Impact of UV radiation on bacterioplankton community composition. App Environ Microbiol 67: 665672.
  • Zhu L & Bustamante CD (2005) A composite-likelihood method for detecting directional selection from DNA sequence data. Genetics 170: 14111421.