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References

  • Arrigo KR (2005) Marine microorganisms and global nutrient cycles. Nature 437: 349355.
  • Barns SM, Delwiche CF, Palmer JD & Pace NR (1996) Perspectives on archaeal diversity, thermophily and monophyly from environmental rRNA sequences. P Natl Acad Sci USA 93: 91889193.
  • Brandes JA, Devol AH & Deutsch C (2007) New developments in the marine nitrogen cycle. Chem Rev 107: 577589.
  • Byrne N, Strous M, Crépeau V et al. (2008) Presence and activity of anaerobic ammonium-oxidizing bacteria at deep-sea hydrothermal vents. The ISME Journal DOI: DOI: 10.1038/ismej.2008.72.
  • Castenholz RW (1984) Composition of hot spring microbial mats: a summary. Microbial Mats: Stromatolites (CohenY, CastenholzRW & HalversonHO, eds), pp. 101119. Alan Liss, New York.
  • Dalsgaard T & Thamdrup B (2002) Factors controlling anaerobic ammonium oxidation with nitrite in marine sediments. Appl Environ Microbiol 68: 38023808.
  • Dalsgaard T, Canfield DE, Petersen J, Thamdrup B & Acuña-González J (2003) N2 production by the anammox reaction in the anoxic water column of Golfo Dulce, Costa Rica. Nature 422: 606608.
  • De La Torre JR, Walker CB, Ingalls AE, Konneke M & Stahl DA (2008) Cultivation of a thermophilic ammonia oxidizing archaeon synthesizing crenarchaeol. Environ Microbiol 10: 810818.
  • Elshahed MS, Youssef NH, Luo QW, Najar FZ, Roe BA, Sisk TM, Buhring SI, Hinrichs KU & Krumholz LR (2007) Phylogenetic and metabolic diversity of planctomycetes from anaerobic, sulfide- and sulfur-rich Zodletone Spring, Oklahoma. Appl Environ Microbiol 73: 47074716.
  • Felsenstein J (1985) Confidence-limits on phylogenies – an approach using the bootstrap. Evolution 39: 783791.
  • Francis CA, Beman JM & Kuypers MMM (2007) New processes and players in the nitrogen cycle: the microbial ecology of anaerobic and archaeal ammonia oxidation. The ISME Journal 1: 1927.
  • Hatzenpichler R, Lebedeva EV, Spieck E, Stoecker K, Richter A, Daims H & Wagner M (2008) A moderately thermophilic ammonia-oxidizing crenarchaeote from a hot spring. P Natl Acad Sci USA 105: 21342139.
  • Hollocher TC & Kristjansson JK (1992) Thermophilic denitrifying bacteria – a survey of hot-springs in southwestern Iceland. FEMS Microbiol Ecol 101: 113119.
  • Hopmans EC, Kienhuis MVM, Rattray JE, Jaeschke A, Schouten S & Sinninghe Damsté JS (2006) Improved analysis of ladderane lipids in biomass and sediments using high-performance liquid chromatography/atmospheric pressure chemical ionization tandem mass spectrometry. Rapid Commun Mass Sp 20: 20992103.
  • Huang Z, Hedlund BP, Younas Y, Wiegel J, Zhou J & Zhang CL (2007) Molecular phylogeny of uncultivated Crenarchaeota in Great Basin hot springs of moderately elevated temperature. Geomicrobiol J 24: 535542.
  • Kartal B, Rattray J, Van Niftrik LA et al. (2007) Candidatus“Anammoxoglobus propionicus” a new propionate oxidizing species of anaerobic ammonium oxidizing bacteria. Syst Appl Microbiol 30: 3949.
  • Kvist T, Mengewein A, Manzei S, Ahring BK & Westermann BK (2005) Diversity of thermophilic and non-thermophilic crenarchaeota at 80°C. FEMS Microbiol Lett 244: 6168.
  • Kuypers MMM, Sliekers AO, Lavik G, Schmid M, Jørgensen BB, Kuenen JG, Sinninghe Damsté JS, Strous M & Jetten MSM (2003) Anaerobic ammonium oxidation by anammox bacteria in the Black Sea. Nature 422: 608611.
  • Kuypers MMM, Lavik G, Woebken D, Schmid M, Fuchs BM, Amann R, Jørgensen BB & Jetten MSM (2005) Massive nitrogen loss from the Benguela upwelling system through anaerobic ammonium oxidation. P Natl Acad Sci USA 102: 64786483.
  • Meyer-Dombard D, Shock EL & Amend JP (2005) Archaeal and bacterial communities in geochemically diverse hot springs of Yellowstone National Park, USA. Geobiology 3: 211227.
  • Patel BK, Morgan HW, Wiegel J & Daniel RM (1987) Isolation of an extremely thermophilic chemoorganotrophic anaerobe similar to Dictyoglomus thermophilum from New Zealand hot-springs. Arch Microbiol 147: 2124.
  • Purcell D, Sompong U, Yim LC, Barraclough TG, Peerapornpisal Y & Pointing SB (2007) The effects of temperature, pH and sulphide on the community structure of hyperthermophilic streamers in hot springs of northern Thailand. FEMS Microbiol Ecol 60: 456466.
  • Quan ZX, Rhee ZK, Zuo JE, Yang Y, Bae JW, Park JR, Lee ST & Park JH (2008) Diversity of ammonium-oxidizing bacteria in a granular sludge anaerobic ammonium-oxidizing (anammox) reactor. Environ Microbiol 10: 31303139.
  • Rattray JE (2008) Ladderane lipids in anammox bacteria: occurrence, biosynthesis and application as environmental markers. PhD Thesis, University of Utrecht, Utrecht, the Netherlands.
  • Rattray JE, Van De Vossenberg J, Hopmans EC, Kartal B, Van Niftrik L, Rijpstra WIC, Strous M, Jetten MSM, Schouten S & Damste JSS (2008) Ladderane lipid distribution in four genera of anammox bacteria. Arch Microbiol 190: 5166.
  • Reigstad LJ, Richter A, Daims H, Urich T, Schwark L & Schleper C (2008) Nitrification in terrestrial hot springs of Iceland and Kamchatka. FEMS Microbiol Ecol 64: 167174.
  • Rysgaard S & Glud RN (2004a) Anaerobic N2 production in Arctic sea ice. Limnol Oceanogr 49: 8694.
  • Rysgaard S, Glud RN, Risgaard-Peterson N & Dalsgaard T (2004a) Denitrification and anammox activity in Artic marine sediments. Limnol Oceanogr 49: 14931502.
  • Saitou N & Nei M (1987) The neighbor-joining method – a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406425.
  • Schmid M, Twachtmann U, Klein M, Strous M, Juretschko S, Jetten M, Metzger JW, Schleifer K-H & Wagner M (2000) Molecular evidence for genus level diversity of bacteria capable of catalyzing anaerobic ammonium oxidation. Syst Appl Microbiol 23: 93106.
  • Schmid MC, Maas B, Dapena A et al. (2005) Biomarkers for in situ detection of anaerobic ammonium-oxidizing (anammox) bacteria. Appl Environ Microbiol 71: 16771684.
  • Schmid MC, Risgaard-Petersen N, Van De Vossenberg J et al. (2007) Anaerobic ammonium-oxidizing bacteria in marine environments: widespread occurrence but low diversity. Environ Microbiol 9: 14761484.
  • Schubert CJ, Durisch-Kaiser E, Wehrli B, Thamdrup B, Lam P & Kuypers MMM (2006) Anaerobic ammonium oxidation in a tropical freshwater system (Lake Tanganyika). Environ Microbiol 8: 18571863.
  • Sinninghe Damsté JS, Strous M, Rijpstra WIC, Hopmans EC, Geenevasen JAJ, Van Duin ACT, Van Niftrik LA & Jetten MSM (2002) Linearly concatenated cyclobutane lipids form a dense bacterial membrane. Nature 419: 708712.
  • Strous M, Fuerst JA, Kramer EHM, Logemann S, Muyzer G, Van de Pas-Schoonen KT, Webb R, Kuenen JG & Jetten MSM (1999a) Missing lithotroph identified as new planctomycete. Nature 400: 446449.
  • Strous M, Kuenen JG & Jetten MSM (1999b) Key physiology of anaerobic ammonium oxidation. Appl Environ Microbiol 65: 32483250.
  • Tamura K, Nei M & Kumar S (2004) Prospects for inferring very large phylogenies by using the neighbor-joining method. P Natl Acad Sci USA 101: 1103011035.
  • Tamura K, Dudley J, Nei M & Kumar S (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24: 15961599.
  • Trimmer M, Nicholls JC & Deflandre B (2003) Anaerobic ammonium oxidation measured in sediments along the Thames estuary, United Kingdom. Appl Environ Microbiol 69: 64476454.
  • Van Niftrik LA, Fuerst JA, Sinninghe Damsté JS, Kuenen JG, Jetten MSM & Strous M (2004) The anammoxosome: an intracytoplasmic compartment in anammox bacteria. FEMS Microbiol Lett 233: 713.
  • Van Niftrik L, Geerts WJC, Van Donselaar EG, Humbel BM, Yakushevska A, Verkleij AJ, Jetten MSM & Strous M (2008) Combined structural and chemical analysis of the anammoxosome: a membrane-bounded intracytoplasmic compartment in anammox bacteria. J Struct Biol 161: 401410.
  • Ward DM, Tayne TA, Anderson KL & Bateson MM (1987) Community structure and interactions among community members in hot spring cyanobacterial mats. Symp Soc Gen Microbiol 41: 179210.
  • Ward DM, Ferris MJ, Nold SC & Bateson MM (1998) A natural view of microbial biodiversity within hot spring cyanobacterial mat communities. Microbiol Mol Biol R 62: 13531370.
  • Woebken D, Lam P, Kuypers MMM, Naqvi SWA, Kartal B, Strous M, Jetten MSM, Fuchs BM & Amann R (2008) A microdiversity study of anammox bacteria reveals a novel Candidatus Scalindua phylotype in marine oxygen minimum zones. Environ Microbiol 10: 31063119.
  • Zhang CL, Huang Z, Li YL et al. (2007) Lipid biomarkers, carbon isotopes, and phylogenetic characterization of bacteria in California and Nevada hot springs. Geomicrobiol J 24: 519534.
  • Zhang CL, Ye Q, Huang Z et al. (2008) Global occurrence of Archaeal amoA genes in terrestrial hot springs. Appl Environ Microbiol 74: 64176426.